Wall clock time and date at job start Tue Mar 31 2020 21:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.30435 * 2 1 4 4 C 1.54397 * 110.33932 * 237.83162 * 2 1 3 5 5 N 1.48151 * 104.61301 * 217.15309 * 4 2 1 6 6 C 1.34775 * 127.83798 * 219.58380 * 5 4 2 7 7 O 1.21275 * 120.00151 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99866 * 0.02943 * 6 5 4 9 9 H 1.09000 * 109.46535 * 39.97442 * 8 6 5 10 10 C 1.53048 * 109.46019 * 279.99909 * 8 6 5 11 11 C 1.50804 * 109.18324 * 286.67888 * 10 8 6 12 12 O 1.21242 * 120.01713 * 145.74410 * 11 10 8 13 13 N 1.34561 * 119.96810 * 325.77186 * 11 10 8 14 14 C 1.34330 * 120.98801 * 4.43016 * 13 11 10 15 15 O 1.21540 * 119.21409 * 192.04339 * 14 13 11 16 16 N 1.34295 * 121.58194 * 12.02411 * 14 13 11 17 17 C 1.48144 * 104.32233 * 39.58575 * 5 4 2 18 18 C 1.54277 * 110.43637 * 122.23986 * 2 1 3 19 19 C 1.53004 * 110.34094 * 359.93995 * 18 2 1 20 20 C 1.52998 * 110.34542 * 237.78930 * 18 2 1 21 21 N 1.46500 * 109.47580 * 179.97438 * 20 18 2 22 22 C 1.36932 * 120.00557 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99429 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00158 * 179.97438 * 22 21 20 25 25 N 1.31609 * 120.00193 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99903 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47189 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47225 * 120.00302 * 26 24 22 29 29 H 1.48498 * 109.47484 * 240.00391 * 26 24 22 30 30 H 1.09005 * 109.47058 * 180.71923 * 1 2 3 31 31 H 1.09001 * 109.46676 * 300.71436 * 1 2 3 32 32 H 1.08998 * 109.47576 * 60.71588 * 1 2 3 33 33 H 1.08992 * 110.40719 * 335.93693 * 4 2 1 34 34 H 1.09000 * 110.40697 * 98.37387 * 4 2 1 35 35 H 1.09001 * 109.52052 * 46.59352 * 10 8 6 36 36 H 1.09003 * 109.51710 * 166.77315 * 10 8 6 37 37 H 0.97005 * 119.50425 * 184.41258 * 13 11 10 38 38 H 0.96998 * 119.53499 * 185.71298 * 16 14 13 39 39 H 1.09004 * 110.40486 * 201.62525 * 17 5 4 40 40 H 1.09003 * 110.50809 * 79.25233 * 17 5 4 41 41 H 1.09002 * 109.47188 * 60.00135 * 19 18 2 42 42 H 1.09001 * 109.47097 * 179.97438 * 19 18 2 43 43 H 1.09000 * 109.46954 * 299.99777 * 19 18 2 44 44 H 1.09005 * 109.47208 * 299.99617 * 20 18 2 45 45 H 1.08999 * 109.47402 * 59.99392 * 20 18 2 46 46 H 0.97006 * 119.99588 * 359.97438 * 21 20 18 47 47 H 0.97001 * 120.00233 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0667 -0.7708 -1.2255 5 7 3.2679 -1.4788 -0.7250 6 6 4.4436 -1.6615 -1.3581 7 8 5.3391 -2.2691 -0.8107 8 6 4.6455 -1.1107 -2.7463 9 1 4.1878 -0.1239 -2.8156 10 6 3.9941 -2.0476 -3.7662 11 6 4.8321 -3.2943 -3.8998 12 8 4.2996 -4.3638 -4.1061 13 7 6.1710 -3.2192 -3.7894 14 6 6.7751 -2.0618 -3.4732 15 8 7.9807 -1.9690 -3.5958 16 7 6.0787 -1.0044 -3.0253 17 6 2.8836 -1.9404 0.6292 18 6 2.0687 -0.7712 1.2228 19 6 0.9101 -1.3030 2.0688 20 6 2.9710 0.1319 2.0661 21 7 3.4708 -0.6183 3.2209 22 6 4.3036 -0.0119 4.1230 23 1 4.5915 1.0196 3.9834 24 6 4.7767 -0.7226 5.2174 25 7 4.4254 -1.9795 5.3878 26 14 5.9121 0.1049 6.4486 27 1 6.1528 1.5102 6.0332 28 1 5.2815 0.0876 7.7929 29 1 7.2044 -0.6250 6.4986 30 1 -0.3633 -1.0276 0.0129 31 1 -0.3633 0.5249 0.8835 32 1 -0.3634 0.5026 -0.8963 33 1 1.3242 -1.4857 -1.5798 34 1 2.3383 -0.0774 -2.0215 35 1 2.9935 -2.3159 -3.4273 36 1 3.9303 -1.5465 -4.7321 37 1 6.7081 -4.0128 -3.9401 38 1 6.5317 -0.1583 -2.8850 39 1 3.7716 -2.1297 1.2325 40 1 2.2693 -2.8387 0.5665 41 1 0.2985 -1.9746 1.4662 42 1 1.3061 -1.8452 2.9275 43 1 0.3003 -0.4686 2.4152 44 1 3.8119 0.4718 1.4615 45 1 2.4007 0.9939 2.4124 46 1 3.2119 -1.5447 3.3464 47 1 4.7563 -2.4762 6.1524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182768009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:47 Heat of formation + Delta-G solvation = -106.048395 kcal Electronic energy + Delta-G solvation = -31034.591913 eV Core-core repulsion = 26830.802186 eV Total energy + Delta-G solvation = -4203.789727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.94980 -41.32456 -40.01268 -39.58521 -36.95228 -36.50896 -35.41549 -34.69787 -33.13830 -32.08856 -31.11560 -28.48858 -27.75794 -26.65545 -26.09441 -25.06110 -24.60745 -22.57297 -21.61328 -20.49300 -19.73456 -19.34499 -19.24091 -18.49952 -18.34773 -17.39186 -17.23604 -16.87131 -16.70614 -16.50467 -16.05844 -15.80426 -15.66505 -15.29579 -15.15826 -15.06969 -14.65775 -14.52258 -14.45797 -13.90063 -13.50751 -13.40226 -13.14709 -13.02935 -12.92688 -12.86439 -12.60557 -12.56619 -12.25938 -12.05827 -12.00529 -11.95829 -11.65069 -11.53329 -11.42365 -11.39723 -11.22029 -11.11324 -10.97867 -10.34796 -9.75794 -9.00138 -7.98426 -5.25659 0.56576 1.27262 1.41624 1.43700 1.50278 1.52753 1.71082 2.10599 2.19875 2.52381 3.18021 3.25618 3.35720 3.40569 3.62290 3.66770 3.83198 3.98588 4.16229 4.20438 4.29987 4.39196 4.45778 4.46322 4.64584 4.70933 4.77099 4.81050 4.85844 4.91140 4.95743 5.05688 5.09089 5.12914 5.19302 5.25012 5.36865 5.43752 5.51351 5.53062 5.69228 5.73743 6.12327 6.24557 6.36072 6.54178 6.99935 7.06201 7.30979 8.09477 8.30381 9.25483 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003626 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.011843 B = 7719.871872 C = 9361.906898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.088 0.912 4 C 0.095 3.905 5 N -0.610 5.610 6 C 0.493 3.507 7 O -0.586 6.586 8 C 0.135 3.865 9 H 0.196 0.804 10 C -0.139 4.139 11 C 0.518 3.482 12 O -0.535 6.535 13 N -0.674 5.674 14 C 0.723 3.277 15 O -0.597 6.597 16 N -0.695 5.695 17 C 0.113 3.887 18 C -0.068 4.068 19 C -0.128 4.128 20 C 0.169 3.831 21 N -0.741 5.741 22 C -0.243 4.243 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.969 3.031 27 H -0.265 1.265 28 H -0.289 1.289 29 H -0.299 1.299 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.425 0.575 38 H 0.436 0.564 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.003 0.997 45 H 0.025 0.975 46 H 0.374 0.626 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 7.152 -25.194 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.025 4.025 5 N -0.342 5.342 6 C 0.281 3.719 7 O -0.466 6.466 8 C 0.026 3.974 9 H 0.213 0.787 10 C -0.178 4.178 11 C 0.307 3.693 12 O -0.409 6.409 13 N -0.342 5.342 14 C 0.424 3.576 15 O -0.474 6.474 16 N -0.354 5.354 17 C -0.010 4.010 18 C -0.070 4.070 19 C -0.185 4.185 20 C 0.042 3.958 21 N -0.384 5.384 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.216 1.216 29 H -0.227 1.227 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.199 0.801 37 H 0.265 0.735 38 H 0.278 0.722 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.021 0.979 45 H 0.042 0.958 46 H 0.207 0.793 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.528 6.484 -25.089 28.362 hybrid contribution 1.719 -0.656 1.912 2.653 sum -9.809 5.827 -23.177 25.834 Atomic orbital electron populations 1.21877 0.91887 1.02913 1.02918 1.22153 0.97800 0.99352 0.91645 0.89383 1.23097 0.85455 0.96664 0.97323 1.49039 1.13497 1.54914 1.16794 1.21653 0.80623 0.80256 0.89398 1.90813 1.43031 1.43759 1.68956 1.21401 0.82021 1.05284 0.88663 0.78703 1.22478 1.00383 0.90876 1.04088 1.21690 0.81944 0.92532 0.73090 1.90794 1.71871 1.31830 1.46429 1.44246 1.09796 1.13353 1.66822 1.15704 0.84592 0.80573 0.76760 1.91011 1.13847 1.82511 1.60065 1.44752 1.09581 1.13145 1.67883 1.22339 0.98138 0.97171 0.83369 1.21610 0.94887 0.94623 0.95844 1.21825 0.96675 1.01324 0.98681 1.20815 0.93944 0.93649 0.87364 1.42623 1.56922 1.12815 1.26085 1.19641 1.20020 0.95866 1.01928 0.90958 1.25518 1.03217 0.96764 1.01246 1.69811 1.50662 1.09944 1.31607 0.85136 0.78005 0.78042 0.78991 1.18917 1.21571 1.22653 0.91546 0.92828 0.89748 0.87615 0.85285 0.83100 0.80086 0.73480 0.72223 0.94609 0.90438 0.89827 0.95689 0.91332 0.97889 0.95762 0.79292 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.93 71.98 0.57 -0.78 16 2 C -0.09 -1.30 3.30 -9.89 -0.03 -1.33 16 3 H 0.09 1.26 7.71 -2.39 -0.02 1.24 16 4 C 0.10 0.86 6.22 86.54 0.54 1.40 16 5 N -0.61 -13.20 3.32 -807.95 -2.68 -15.88 16 6 C 0.49 12.23 6.80 87.66 0.60 12.83 16 7 O -0.59 -23.06 16.42 -3.02 -0.05 -23.11 16 8 C 0.14 1.49 3.07 44.28 0.14 1.63 16 9 H 0.20 -0.16 6.98 -2.39 -0.02 -0.17 16 10 C -0.14 -1.03 5.71 29.90 0.17 -0.86 16 11 C 0.52 10.17 7.44 87.72 0.65 10.82 16 12 O -0.53 -14.20 17.93 -2.91 -0.05 -14.25 16 13 N -0.67 -15.09 5.18 -441.65 -2.29 -17.37 16 14 C 0.72 17.69 7.98 179.34 1.43 19.13 16 15 O -0.60 -19.34 17.97 -3.84 -0.07 -19.41 16 16 N -0.70 -11.64 4.91 -462.64 -2.27 -13.91 16 17 C 0.11 3.47 5.92 86.53 0.51 3.98 16 18 C -0.07 -1.83 0.73 -51.28 -0.04 -1.87 16 19 C -0.13 -3.37 7.11 71.98 0.51 -2.86 16 20 C 0.17 6.45 4.94 86.38 0.43 6.88 16 21 N -0.74 -38.05 4.79 -343.46 -1.64 -39.69 16 22 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 23 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 26 Si 0.97 47.94 29.55 68.60 2.03 49.97 16 27 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 30 H 0.07 0.62 6.63 -2.38 -0.02 0.60 16 31 H 0.05 0.68 6.99 -2.39 -0.02 0.66 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.35 16 33 H 0.11 0.50 7.86 -2.39 -0.02 0.48 16 34 H 0.13 -0.08 6.74 -2.39 -0.02 -0.09 16 35 H 0.15 0.62 7.83 -2.39 -0.02 0.60 16 36 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.42 9.43 8.86 -92.70 -0.82 8.60 16 38 H 0.44 5.94 8.90 -92.71 -0.83 5.11 16 39 H 0.04 1.56 6.94 -2.39 -0.02 1.55 16 40 H 0.08 2.18 7.84 -2.39 -0.02 2.16 16 41 H 0.08 1.65 6.69 -2.39 -0.02 1.63 16 42 H 0.02 0.87 6.74 -2.39 -0.02 0.85 16 43 H 0.07 1.69 6.89 -2.39 -0.02 1.67 16 44 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.37 20.56 5.99 -92.70 -0.55 20.00 16 47 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -96.69 375.35 -1.11 -97.80 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -1.16 Total: 25.23 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 6.78 Total: 31.84 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -8.60 Total: -148.07 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -0.17 Total: -56.77 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -96.69 -1.11 -97.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182768009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -96.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds