Wall clock time and date at job start Tue Mar 31 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52476 * 2 1 4 4 C 1.53194 * 109.51251 * 239.92379 * 2 1 3 5 5 N 1.46931 * 108.76321 * 294.69856 * 4 2 1 6 6 C 1.34773 * 120.62671 * 126.40440 * 5 4 2 7 7 O 1.21281 * 120.00560 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99684 * 179.97438 * 6 5 4 9 9 N 1.46501 * 109.47369 * 179.97438 * 8 6 5 10 10 C 1.47315 * 126.69158 * 269.71043 * 9 8 6 11 11 C 1.51581 * 103.59478 * 179.97438 * 10 9 8 12 12 O 1.21234 * 127.15733 * 180.02562 * 11 10 9 13 13 N 1.34764 * 105.68449 * 0.33623 * 11 10 9 14 14 C 1.33795 * 111.64737 * 359.77932 * 13 11 10 15 15 O 1.21540 * 123.77318 * 180.02562 * 14 13 11 16 16 C 1.46924 * 118.73897 * 306.37969 * 5 4 2 17 17 C 1.53194 * 108.77390 * 53.61086 * 16 5 4 18 18 C 1.53040 * 109.31367 * 305.36176 * 17 16 5 19 19 H 1.08995 * 109.45933 * 301.36091 * 18 17 16 20 20 C 1.53001 * 109.45855 * 181.38794 * 18 17 16 21 21 N 1.46490 * 109.47264 * 64.97245 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46685 * 269.99637 * 26 24 22 28 28 H 1.48494 * 109.47357 * 29.99716 * 26 24 22 29 29 H 1.48502 * 109.47120 * 150.00435 * 26 24 22 30 30 H 1.08998 * 109.47104 * 299.91573 * 1 2 3 31 31 H 1.08995 * 109.46976 * 59.91986 * 1 2 3 32 32 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.60048 * 174.91037 * 4 2 1 34 34 H 1.09000 * 109.57848 * 54.47335 * 4 2 1 35 35 H 1.09000 * 109.47382 * 299.99927 * 8 6 5 36 36 H 1.08999 * 109.47491 * 59.99782 * 8 6 5 37 37 H 1.08996 * 110.59840 * 298.56297 * 10 9 8 38 38 H 1.09004 * 110.59723 * 61.50485 * 10 9 8 39 39 H 0.97005 * 124.17821 * 179.81183 * 13 11 10 40 40 H 1.08997 * 109.58682 * 293.82790 * 16 5 4 41 41 H 1.09004 * 109.58786 * 173.39456 * 16 5 4 42 42 H 1.09002 * 109.49391 * 185.41031 * 17 16 5 43 43 H 1.08995 * 109.50041 * 65.31952 * 17 16 5 44 44 H 1.09003 * 109.46836 * 304.96952 * 20 18 17 45 45 H 1.08999 * 109.47071 * 184.97991 * 20 18 17 46 46 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 47 47 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7236 -1.2495 5 7 1.6516 -2.1380 -1.1696 6 6 0.9749 -2.7216 -2.1785 7 8 0.6818 -2.0786 -3.1641 8 6 0.5824 -4.1734 -2.0818 9 7 -0.1384 -4.5662 -3.2952 10 6 -1.5934 -4.4980 -3.5157 11 6 -1.7650 -5.0245 -4.9267 12 8 -2.8032 -5.1512 -5.5398 13 7 -0.5242 -5.3289 -5.3554 14 6 0.3985 -5.0662 -4.4229 15 8 1.5888 -5.2573 -4.5774 16 6 2.0138 -2.9039 0.0307 17 6 1.5027 -2.1556 1.2659 18 6 2.0408 -0.7231 1.2484 19 1 3.1305 -0.7446 1.2353 20 6 1.5607 0.0170 2.4985 21 7 2.1471 -0.6035 3.6888 22 6 1.8591 -0.1072 4.9321 23 1 1.1992 0.7415 5.0352 24 6 2.4152 -0.6948 6.0601 25 7 3.2199 -1.7288 5.9345 26 14 2.0216 -0.0181 7.7562 27 1 3.0148 1.0261 8.1151 28 1 0.6604 0.5751 7.7488 29 1 2.0772 -1.1175 8.7529 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1279 -0.6463 -1.2978 34 1 1.6012 -0.2728 -2.1388 35 1 1.4780 -4.7857 -1.9766 36 1 -0.0611 -4.3189 -1.2142 37 1 -2.1195 -5.1321 -2.8021 38 1 -1.9439 -3.4682 -3.4462 39 1 -0.3246 -5.6930 -6.2321 40 1 3.0977 -3.0043 0.0869 41 1 1.5550 -3.8917 -0.0139 42 1 1.8476 -2.6629 2.1670 43 1 0.4130 -2.1352 1.2539 44 1 0.4737 -0.0380 2.5582 45 1 1.8690 1.0610 2.4435 46 1 2.7402 -1.3655 3.5964 47 1 3.4240 -2.0804 5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185328199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:00 Heat of formation + Delta-G solvation = -87.206096 kcal Electronic energy + Delta-G solvation = -30034.976936 eV Core-core repulsion = 25832.004272 eV Total energy + Delta-G solvation = -4202.972664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30839 -41.47676 -39.81895 -39.26152 -37.32597 -36.80359 -35.57622 -34.97678 -33.25024 -31.83903 -30.61251 -28.45377 -28.31810 -27.12049 -25.39674 -24.21358 -23.56184 -23.23341 -22.52480 -20.87680 -19.67842 -19.29335 -19.16741 -18.66393 -17.79961 -17.66892 -16.99879 -16.94093 -16.76338 -16.42894 -16.17124 -15.71865 -15.55328 -15.37330 -15.35711 -15.16273 -14.96341 -14.79868 -14.39899 -14.19443 -13.99240 -13.66644 -13.59501 -13.17090 -12.76329 -12.68443 -12.60631 -12.44934 -12.20423 -12.09163 -11.88481 -11.75777 -11.52335 -11.50248 -11.43647 -11.41628 -11.16008 -11.10755 -10.87369 -10.04825 -9.65998 -9.05174 -8.36336 -5.29567 0.53470 1.05615 1.52815 1.60447 1.69985 1.79710 1.84478 1.94924 2.16557 2.72712 3.03026 3.38809 3.42295 3.64786 3.69360 3.74875 3.81146 4.03237 4.14833 4.19516 4.25730 4.29445 4.31859 4.38034 4.46382 4.59788 4.62787 4.71417 4.73223 4.80138 4.82238 4.94490 5.01523 5.04486 5.13034 5.13433 5.17206 5.22424 5.30749 5.49373 5.59931 5.62275 5.89335 6.28172 6.36522 6.54858 6.95756 7.08428 7.14375 8.05352 8.15495 9.16245 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.002203 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.515287 B =12706.801699 C =12880.715563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.082 0.918 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.493 3.507 7 O -0.576 6.576 8 C 0.131 3.869 9 N -0.604 5.604 10 C 0.068 3.932 11 C 0.534 3.466 12 O -0.502 6.502 13 N -0.673 5.673 14 C 0.703 3.297 15 O -0.582 6.582 16 C 0.109 3.891 17 C -0.122 4.122 18 C -0.080 4.080 19 H 0.063 0.937 20 C 0.164 3.836 21 N -0.753 5.753 22 C -0.333 4.333 23 H 0.061 0.939 24 C -0.102 4.102 25 N -0.974 5.974 26 Si 1.126 2.874 27 H -0.288 1.288 28 H -0.275 1.275 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.134 0.866 39 H 0.438 0.562 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.022 0.978 45 H 0.007 0.993 46 H 0.363 0.637 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -7.007 -19.227 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.281 3.719 7 O -0.456 6.456 8 C 0.006 3.994 9 N -0.342 5.342 10 C -0.056 4.056 11 C 0.322 3.678 12 O -0.374 6.374 13 N -0.343 5.343 14 C 0.404 3.596 15 O -0.458 6.458 16 C -0.013 4.013 17 C -0.160 4.160 18 C -0.099 4.099 19 H 0.081 0.919 20 C 0.038 3.962 21 N -0.398 5.398 22 C -0.465 4.465 23 H 0.079 0.921 24 C -0.293 4.293 25 N -0.623 5.623 26 Si 0.952 3.048 27 H -0.215 1.215 28 H -0.200 1.200 29 H -0.218 1.218 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.152 0.848 39 H 0.281 0.719 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.196 0.804 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.961 -6.737 -18.317 21.476 hybrid contribution 0.404 0.232 -2.037 2.090 sum -8.558 -6.505 -20.354 23.018 Atomic orbital electron populations 1.21784 0.94453 1.02024 1.01224 1.21378 0.96865 0.99445 0.93218 0.89966 1.21577 0.99737 0.80690 0.98130 1.48145 1.55260 1.11537 1.18323 1.21641 0.77227 0.90941 0.82133 1.90692 1.56329 1.66244 1.32309 1.21524 1.00699 0.90994 0.86136 1.47091 1.07902 1.64883 1.14279 1.22796 0.81392 1.06878 0.94577 1.21065 0.82241 0.75062 0.89421 1.90863 1.30224 1.52457 1.63866 1.44274 1.09039 1.61656 1.19284 1.15943 0.84410 0.77997 0.81226 1.91006 1.14330 1.59569 1.80931 1.21987 1.01616 0.95504 0.82221 1.21871 1.01593 0.94801 0.97710 1.21201 0.99762 0.95706 0.93257 0.91873 1.20772 0.95510 0.94327 0.85584 1.42556 1.57418 1.37524 1.02280 1.20372 1.26156 1.13138 0.86806 0.92129 1.27074 0.98221 0.98044 1.05997 1.70964 1.39795 1.26774 1.24733 0.82625 0.76032 0.74745 0.71417 1.21469 1.20047 1.21819 0.93153 0.92667 0.92205 0.90965 0.89925 0.84964 0.81760 0.81483 0.84839 0.71903 0.90298 0.86235 0.91810 0.90806 0.96035 0.97551 0.80404 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.38 71.98 0.60 -2.35 16 2 C -0.09 -1.97 2.72 -10.71 -0.03 -2.00 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.49 5.83 86.36 0.50 2.99 16 5 N -0.60 -10.75 2.41 -818.90 -1.97 -12.73 16 6 C 0.49 9.31 7.77 87.66 0.68 9.99 16 7 O -0.58 -15.58 15.84 -3.03 -0.05 -15.63 16 8 C 0.13 1.41 4.97 85.63 0.43 1.83 16 9 N -0.60 -7.99 2.51 -846.22 -2.12 -10.12 16 10 C 0.07 0.55 7.66 85.76 0.66 1.20 16 11 C 0.53 7.29 8.81 87.94 0.77 8.06 16 12 O -0.50 -9.92 18.02 -2.89 -0.05 -9.97 16 13 N -0.67 -9.62 5.70 -441.12 -2.52 -12.13 16 14 C 0.70 13.28 8.68 179.44 1.56 14.84 16 15 O -0.58 -15.68 17.71 -3.84 -0.07 -15.75 16 16 C 0.11 1.64 6.34 86.36 0.55 2.19 16 17 C -0.12 -2.72 4.90 30.67 0.15 -2.57 16 18 C -0.08 -2.15 1.96 -10.76 -0.02 -2.17 16 19 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 20 C 0.16 6.08 5.19 86.38 0.45 6.53 16 21 N -0.75 -35.83 5.31 -343.47 -1.83 -37.66 16 22 C -0.33 -18.24 9.99 84.03 0.84 -17.40 16 23 H 0.06 3.29 7.83 -2.91 -0.02 3.27 16 24 C -0.10 -5.74 5.50 84.86 0.47 -5.27 16 25 N -0.97 -58.74 13.70 21.65 0.30 -58.44 16 26 Si 1.13 50.72 29.92 68.60 2.05 52.77 16 27 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 29 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 30 H 0.05 1.20 6.58 -2.39 -0.02 1.18 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.22 5.97 -2.39 -0.01 1.20 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.89 7.01 -2.39 -0.02 1.87 16 35 H 0.13 1.26 7.83 -2.39 -0.02 1.24 16 36 H 0.17 0.37 7.69 -2.39 -0.02 0.35 16 37 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.44 4.94 8.96 -92.70 -0.83 4.11 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.12 0.93 5.93 -2.38 -0.01 0.92 16 42 H 0.06 1.75 7.15 -2.39 -0.02 1.73 16 43 H 0.07 1.61 6.33 -2.39 -0.02 1.59 16 44 H 0.02 0.82 6.74 -2.39 -0.02 0.80 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.36 17.55 5.68 -92.71 -0.53 17.02 16 47 H 0.25 14.60 6.77 -92.71 -0.63 13.97 16 Total: -1.00 -82.07 376.77 1.16 -80.91 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.19 Total: 22.86 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 7.61 Total: 15.87 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -8.14 Total: -131.07 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.17 Total: -41.35 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -82.07 1.16 -80.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185328199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.298 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds