Wall clock time and date at job start Tue Mar 31 2020 21:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49742 * 2 1 4 4 C 1.53625 * 109.65881 * 239.91849 * 2 1 3 5 5 N 1.46929 * 108.54413 * 294.84555 * 4 2 1 6 6 C 1.34779 * 120.62688 * 126.36778 * 5 4 2 7 7 O 1.21280 * 120.00299 * 359.72151 * 6 5 4 8 8 C 1.50697 * 119.99518 * 179.72497 * 6 5 4 9 9 N 1.46503 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.34766 * 124.17688 * 270.01373 * 9 8 6 11 11 O 1.21229 * 127.15675 * 359.92898 * 10 9 8 12 12 C 1.51588 * 105.68123 * 179.97438 * 10 9 8 13 13 N 1.47312 * 103.59518 * 0.02562 * 12 10 9 14 14 C 1.33794 * 124.17510 * 89.97575 * 9 8 6 15 15 O 1.21533 * 123.77500 * 359.76756 * 14 9 8 16 16 C 1.46927 * 118.73876 * 306.09728 * 5 4 2 17 17 C 1.53191 * 108.77308 * 53.85716 * 16 5 4 18 18 C 1.53037 * 109.31542 * 305.36321 * 17 16 5 19 19 H 1.08994 * 109.45995 * 301.35984 * 18 17 16 20 20 C 1.52997 * 109.46106 * 181.38615 * 18 17 16 21 21 N 1.46506 * 109.46988 * 65.00166 * 20 18 17 22 22 C 1.36942 * 119.99683 * 180.02562 * 21 20 18 23 23 H 1.07995 * 119.99993 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99394 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00323 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47058 * 89.99905 * 26 24 22 28 28 H 1.48502 * 109.47646 * 210.00083 * 26 24 22 29 29 H 1.48506 * 109.47074 * 330.00153 * 26 24 22 30 30 H 1.09000 * 109.47262 * 299.93287 * 1 2 3 31 31 H 1.09003 * 109.47280 * 59.93176 * 1 2 3 32 32 H 1.08993 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.73895 * 175.10882 * 4 2 1 34 34 H 1.08998 * 109.66857 * 54.54350 * 4 2 1 35 35 H 1.08999 * 109.47498 * 60.00032 * 8 6 5 36 36 H 1.08999 * 109.47227 * 299.99757 * 8 6 5 37 37 H 1.09006 * 110.59386 * 118.53114 * 12 10 9 38 38 H 1.08999 * 110.59613 * 241.31505 * 12 10 9 39 39 H 0.96993 * 126.68815 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.58541 * 173.64573 * 16 5 4 41 41 H 1.08993 * 109.58369 * 294.07119 * 16 5 4 42 42 H 1.08999 * 109.49779 * 65.31814 * 17 16 5 43 43 H 1.09004 * 109.49800 * 185.37908 * 17 16 5 44 44 H 1.08995 * 109.47224 * 185.00086 * 20 18 17 45 45 H 1.09001 * 109.47218 * 305.00244 * 20 18 17 46 46 H 0.96997 * 120.00178 * 0.02562 * 21 20 18 47 47 H 0.97003 * 120.00120 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0468 -0.7251 -1.2519 5 7 1.6528 -2.1382 -1.1694 6 6 0.9766 -2.7224 -2.1783 7 8 0.6831 -2.0797 -3.1640 8 6 0.5850 -4.1744 -2.0815 9 7 -0.1344 -4.5682 -3.2954 10 6 -1.4707 -4.4794 -3.4459 11 8 -2.2739 -4.0753 -2.6328 12 6 -1.7606 -4.9912 -4.8430 13 7 -0.4291 -5.3424 -5.3663 14 6 0.4542 -5.0596 -4.3918 15 8 1.6532 -5.2277 -4.4973 16 6 2.0154 -2.9038 0.0311 17 6 1.5037 -2.1557 1.2661 18 6 2.0409 -0.7228 1.2485 19 1 3.1305 -0.7436 1.2355 20 6 1.5601 0.0172 2.4983 21 7 2.1474 -0.6024 3.6889 22 6 1.8581 -0.1066 4.9322 23 1 1.1973 0.7414 5.0350 24 6 2.4142 -0.6940 6.0602 25 7 3.2199 -1.7272 5.9348 26 14 2.0202 -0.0173 7.7561 27 1 0.8187 -0.7031 8.2959 28 1 3.1729 -0.2514 8.6627 29 1 1.7557 1.4407 7.6581 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1333 -0.6508 -1.2981 34 1 1.6096 -0.2753 -2.1432 35 1 -0.0586 -4.3201 -1.2139 36 1 1.4809 -4.7861 -1.9760 37 1 -2.4013 -5.8722 -4.8034 38 1 -2.2205 -4.2110 -5.4495 39 1 -0.2283 -5.7055 -6.2430 40 1 1.5572 -3.8919 -0.0135 41 1 3.0993 -3.0035 0.0873 42 1 0.4140 -2.1359 1.2539 43 1 1.8483 -2.6628 2.1673 44 1 1.8674 1.0615 2.4431 45 1 0.4731 -0.0389 2.5582 46 1 2.7412 -1.3638 3.5965 47 1 3.6089 -2.1375 6.7231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185641763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:19 Heat of formation + Delta-G solvation = -58.541321 kcal Electronic energy + Delta-G solvation = -30324.829233 eV Core-core repulsion = 26123.099567 eV Total energy + Delta-G solvation = -4201.729666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71128 -40.40143 -38.89910 -38.14904 -36.43131 -35.04561 -34.97785 -33.44022 -31.80922 -30.35364 -29.39300 -27.98657 -27.04866 -26.25664 -23.72516 -23.27943 -23.03203 -21.97277 -21.11333 -19.83871 -18.46765 -18.40087 -17.97896 -17.12566 -17.09553 -16.68578 -16.23253 -15.70044 -15.60750 -15.30843 -14.93117 -14.53945 -14.50094 -14.32131 -14.11884 -13.97692 -13.84225 -13.64008 -13.40226 -12.96523 -12.60544 -12.52708 -12.43718 -12.17768 -11.58608 -11.44440 -11.31252 -11.05759 -10.93314 -10.79631 -10.73954 -10.63642 -10.36783 -10.24474 -10.17111 -9.98818 -9.94885 -9.64243 -9.63176 -8.86324 -8.65833 -6.90963 -5.77278 -3.05063 1.29143 1.68744 2.40226 2.55243 2.74055 2.99136 3.43271 3.48770 3.50108 3.59340 4.20968 4.33467 4.54716 4.58471 4.68991 4.72207 4.83009 4.92715 4.99823 5.01917 5.10587 5.20239 5.23453 5.43277 5.53200 5.60657 5.71456 5.78329 5.84067 5.85910 6.04177 6.08269 6.19546 6.29015 6.33109 6.37580 6.44700 6.46178 6.62696 6.65116 6.80987 6.94104 6.98564 7.24482 7.70299 7.72792 7.95636 8.42328 9.53508 10.11738 10.46321 11.45736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002362 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.797691 B =11851.855548 C =12018.654546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.505 3.495 7 O -0.539 6.539 8 C 0.100 3.900 9 N -0.562 5.562 10 C 0.524 3.476 11 O -0.463 6.463 12 C 0.066 3.934 13 N -0.728 5.728 14 C 0.708 3.292 15 O -0.540 6.540 16 C 0.102 3.898 17 C -0.129 4.129 18 C -0.088 4.088 19 H 0.072 0.928 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.442 0.558 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.022 0.978 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 -8.424 -23.939 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.291 3.709 7 O -0.416 6.416 8 C -0.026 4.026 9 N -0.308 5.308 10 C 0.312 3.688 11 O -0.332 6.332 12 C -0.062 4.062 13 N -0.393 5.393 14 C 0.408 3.592 15 O -0.413 6.413 16 C -0.020 4.020 17 C -0.167 4.167 18 C -0.107 4.107 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.035 0.965 45 H 0.040 0.960 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.128 -7.810 -23.832 26.363 hybrid contribution 0.131 -0.022 0.728 0.740 sum -7.997 -7.832 -23.104 25.672 Atomic orbital electron populations 1.21845 0.94818 1.01973 1.01474 1.21552 0.96655 0.99486 0.94074 0.89987 1.21802 0.99465 0.79829 0.99303 1.48052 1.55322 1.12029 1.17856 1.20584 0.78101 0.89105 0.83090 1.90690 1.54919 1.64908 1.31076 1.21551 0.99937 0.94772 0.86292 1.45848 1.09504 1.59454 1.15958 1.20904 0.81700 0.76710 0.89535 1.90855 1.51085 1.42874 1.48342 1.22444 0.87249 1.03823 0.92642 1.45337 1.06475 1.69709 1.17778 1.15754 0.85381 0.77700 0.80334 1.91029 1.11753 1.57803 1.80690 1.21964 1.01055 0.94600 0.84399 1.21986 1.01508 0.96134 0.97027 1.21300 1.00312 0.94591 0.94529 0.90943 1.20713 0.95932 0.94661 0.85620 1.42381 1.56708 1.37694 1.00846 1.19227 1.22905 1.10847 0.83847 0.91299 1.24717 1.00098 0.98428 0.97792 1.69648 1.35644 1.24529 1.28534 0.86205 0.77244 0.78275 0.84565 1.21759 1.21802 1.20822 0.91881 0.93407 0.92639 0.91265 0.89216 0.85506 0.85456 0.85756 0.85735 0.71376 0.90203 0.90499 0.91201 0.89158 0.96489 0.96042 0.78310 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.39 37.16 0.31 -1.61 16 2 C -0.10 -1.27 2.72 -90.28 -0.25 -1.51 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.46 5.87 -3.48 -0.02 1.44 16 5 N -0.60 -7.27 2.40 -172.50 -0.41 -7.68 16 6 C 0.51 6.66 7.77 -10.99 -0.09 6.57 16 7 O -0.54 -8.83 15.84 5.56 0.09 -8.74 16 8 C 0.10 1.02 4.52 -5.19 -0.02 0.99 16 9 N -0.56 -5.82 2.09 -122.02 -0.26 -6.08 16 10 C 0.52 4.93 8.32 -10.55 -0.09 4.84 16 11 O -0.46 -5.77 17.76 5.60 0.10 -5.67 16 12 C 0.07 0.29 7.97 -4.31 -0.03 0.26 16 13 N -0.73 -4.25 6.58 -65.73 -0.43 -4.69 16 14 C 0.71 7.43 8.62 -88.02 -0.76 6.67 16 15 O -0.54 -7.58 17.48 5.34 0.09 -7.49 16 16 C 0.10 1.11 6.34 -3.71 -0.02 1.09 16 17 C -0.13 -1.77 4.91 -26.61 -0.13 -1.90 16 18 C -0.09 -1.32 1.96 -90.58 -0.18 -1.50 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.06 5.18 -4.04 -0.02 3.04 16 21 N -0.73 -17.89 5.32 -59.91 -0.32 -18.21 16 22 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 30 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 35 H 0.13 1.09 7.55 -51.93 -0.39 0.70 16 36 H 0.13 1.10 7.66 -51.93 -0.40 0.71 16 37 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.44 1.41 8.96 -40.82 -0.37 1.04 16 40 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 43 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 46 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -37.24 377.50 -8.03 -45.27 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.74 Total: 6.19 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.54 Total: 11.17 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.70 Total: -63.69 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.28 Total: -21.90 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.24 -8.03 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185641763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.271 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds