Wall clock time and date at job start Tue Mar 31 2020 21:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49742 * 2 1 4 4 C 1.53625 * 109.65881 * 239.91849 * 2 1 3 5 5 N 1.46929 * 108.54413 * 294.84555 * 4 2 1 6 6 C 1.34779 * 120.62688 * 126.36778 * 5 4 2 7 7 O 1.21280 * 120.00299 * 359.72151 * 6 5 4 8 8 C 1.50697 * 119.99518 * 179.72497 * 6 5 4 9 9 N 1.46503 * 109.46895 * 180.02562 * 8 6 5 10 10 C 1.34766 * 124.17688 * 270.01373 * 9 8 6 11 11 O 1.21229 * 127.15675 * 359.92898 * 10 9 8 12 12 C 1.51588 * 105.68123 * 179.97438 * 10 9 8 13 13 N 1.47312 * 103.59518 * 0.02562 * 12 10 9 14 14 C 1.33794 * 124.17510 * 89.97575 * 9 8 6 15 15 O 1.21533 * 123.77500 * 359.76756 * 14 9 8 16 16 C 1.46927 * 118.73876 * 306.09728 * 5 4 2 17 17 C 1.53191 * 108.77308 * 53.85716 * 16 5 4 18 18 C 1.53037 * 109.31542 * 305.36321 * 17 16 5 19 19 H 1.08994 * 109.45995 * 301.35984 * 18 17 16 20 20 C 1.52997 * 109.46106 * 181.38615 * 18 17 16 21 21 N 1.46506 * 109.46988 * 65.00166 * 20 18 17 22 22 C 1.36942 * 119.99683 * 180.02562 * 21 20 18 23 23 H 1.07995 * 119.99993 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99394 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00323 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99865 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47058 * 89.99905 * 26 24 22 28 28 H 1.48502 * 109.47646 * 210.00083 * 26 24 22 29 29 H 1.48506 * 109.47074 * 330.00153 * 26 24 22 30 30 H 1.09000 * 109.47262 * 299.93287 * 1 2 3 31 31 H 1.09003 * 109.47280 * 59.93176 * 1 2 3 32 32 H 1.08993 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.73895 * 175.10882 * 4 2 1 34 34 H 1.08998 * 109.66857 * 54.54350 * 4 2 1 35 35 H 1.08999 * 109.47498 * 60.00032 * 8 6 5 36 36 H 1.08999 * 109.47227 * 299.99757 * 8 6 5 37 37 H 1.09006 * 110.59386 * 118.53114 * 12 10 9 38 38 H 1.08999 * 110.59613 * 241.31505 * 12 10 9 39 39 H 0.96993 * 126.68815 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.58541 * 173.64573 * 16 5 4 41 41 H 1.08993 * 109.58369 * 294.07119 * 16 5 4 42 42 H 1.08999 * 109.49779 * 65.31814 * 17 16 5 43 43 H 1.09004 * 109.49800 * 185.37908 * 17 16 5 44 44 H 1.08995 * 109.47224 * 185.00086 * 20 18 17 45 45 H 1.09001 * 109.47218 * 305.00244 * 20 18 17 46 46 H 0.96997 * 120.00178 * 0.02562 * 21 20 18 47 47 H 0.97003 * 120.00120 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0468 -0.7251 -1.2519 5 7 1.6528 -2.1382 -1.1694 6 6 0.9766 -2.7224 -2.1783 7 8 0.6831 -2.0797 -3.1640 8 6 0.5850 -4.1744 -2.0815 9 7 -0.1344 -4.5682 -3.2954 10 6 -1.4707 -4.4794 -3.4459 11 8 -2.2739 -4.0753 -2.6328 12 6 -1.7606 -4.9912 -4.8430 13 7 -0.4291 -5.3424 -5.3663 14 6 0.4542 -5.0596 -4.3918 15 8 1.6532 -5.2277 -4.4973 16 6 2.0154 -2.9038 0.0311 17 6 1.5037 -2.1557 1.2661 18 6 2.0409 -0.7228 1.2485 19 1 3.1305 -0.7436 1.2355 20 6 1.5601 0.0172 2.4983 21 7 2.1474 -0.6024 3.6889 22 6 1.8581 -0.1066 4.9322 23 1 1.1973 0.7414 5.0350 24 6 2.4142 -0.6940 6.0602 25 7 3.2199 -1.7272 5.9348 26 14 2.0202 -0.0173 7.7561 27 1 0.8187 -0.7031 8.2959 28 1 3.1729 -0.2514 8.6627 29 1 1.7557 1.4407 7.6581 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1333 -0.6508 -1.2981 34 1 1.6096 -0.2753 -2.1432 35 1 -0.0586 -4.3201 -1.2139 36 1 1.4809 -4.7861 -1.9760 37 1 -2.4013 -5.8722 -4.8034 38 1 -2.2205 -4.2110 -5.4495 39 1 -0.2283 -5.7055 -6.2430 40 1 1.5572 -3.8919 -0.0135 41 1 3.0993 -3.0035 0.0873 42 1 0.4140 -2.1359 1.2539 43 1 1.8483 -2.6628 2.1673 44 1 1.8674 1.0615 2.4431 45 1 0.4731 -0.0389 2.5582 46 1 2.7412 -1.3638 3.5965 47 1 3.6089 -2.1375 6.7231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185641763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:18 Heat of formation + Delta-G solvation = -86.398395 kcal Electronic energy + Delta-G solvation = -30326.037206 eV Core-core repulsion = 26123.099567 eV Total energy + Delta-G solvation = -4202.937639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.41748 -41.44079 -39.69540 -39.30726 -37.21766 -36.58763 -35.73281 -34.87858 -33.24644 -31.96696 -30.23673 -28.58130 -28.49600 -27.35340 -25.47449 -24.19631 -23.97068 -23.18282 -22.18835 -20.79700 -19.67781 -19.17070 -19.06567 -18.64500 -17.86801 -17.60990 -17.06157 -16.80059 -16.61717 -16.31712 -16.16866 -15.77251 -15.51891 -15.37754 -15.30658 -15.02361 -14.98963 -14.85307 -14.43090 -14.11018 -13.93778 -13.73073 -13.60717 -13.31217 -12.97229 -12.81808 -12.70776 -12.48996 -12.19749 -12.16864 -12.04799 -11.90361 -11.72229 -11.57152 -11.40040 -11.33685 -11.23813 -10.89041 -10.67335 -10.40924 -9.70507 -8.95087 -7.93536 -5.20759 0.60088 0.99955 1.40505 1.48192 1.48985 1.57359 1.74915 2.09220 2.27537 2.57166 3.02320 3.29791 3.40041 3.68968 3.70961 3.74632 3.82473 4.03204 4.06908 4.19837 4.23497 4.28936 4.31186 4.33549 4.41372 4.47537 4.63996 4.64648 4.70220 4.74597 4.80520 4.85036 4.97494 5.07094 5.17522 5.18677 5.22136 5.30880 5.48525 5.53459 5.60924 5.81537 5.96546 6.23532 6.29783 6.34390 6.93921 7.07453 7.36589 8.13279 8.37524 9.29766 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021487 B = 0.002362 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.797691 B =11851.855548 C =12018.654546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.091 0.909 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.501 3.499 7 O -0.575 6.575 8 C 0.096 3.904 9 N -0.569 5.569 10 C 0.515 3.485 11 O -0.501 6.501 12 C 0.077 3.923 13 N -0.707 5.707 14 C 0.700 3.300 15 O -0.584 6.584 16 C 0.107 3.893 17 C -0.122 4.122 18 C -0.078 4.078 19 H 0.070 0.930 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.295 1.295 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.455 0.545 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.014 0.986 45 H 0.019 0.981 46 H 0.376 0.624 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -8.991 -25.277 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.109 0.891 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.288 3.712 7 O -0.455 6.455 8 C -0.029 4.029 9 N -0.314 5.314 10 C 0.305 3.695 11 O -0.373 6.373 12 C -0.049 4.049 13 N -0.372 5.372 14 C 0.400 3.600 15 O -0.460 6.460 16 C -0.015 4.015 17 C -0.161 4.161 18 C -0.097 4.097 19 H 0.088 0.912 20 C 0.032 3.968 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.798 3.202 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.198 1.198 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.303 0.697 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.032 0.968 45 H 0.037 0.963 46 H 0.209 0.791 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.176 -8.372 -25.219 28.112 hybrid contribution 0.387 0.202 1.097 1.181 sum -8.789 -8.170 -24.122 26.942 Atomic orbital electron populations 1.21779 0.95044 1.01427 1.01297 1.21472 0.96291 0.99822 0.93260 0.89122 1.21758 1.00121 0.80002 0.98301 1.48106 1.54859 1.12018 1.17982 1.21096 0.77385 0.90131 0.82551 1.90663 1.56369 1.66015 1.32471 1.21656 1.01086 0.92937 0.87240 1.46013 1.10142 1.59231 1.15999 1.21733 0.80918 0.75828 0.91061 1.90834 1.51705 1.44711 1.50008 1.22710 0.86681 1.06093 0.89411 1.45314 1.06318 1.68168 1.17398 1.15980 0.85283 0.77720 0.81015 1.90994 1.13651 1.59856 1.81524 1.22008 1.01894 0.95195 0.82365 1.21863 1.01086 0.95453 0.97650 1.21179 1.00100 0.95138 0.93323 0.91158 1.20833 0.95445 0.94656 0.85820 1.42549 1.56743 1.37640 1.01496 1.19589 1.22176 1.10528 0.85282 0.91167 1.25480 1.00629 0.99126 1.01274 1.69789 1.36950 1.25857 1.29107 0.85210 0.76711 0.78058 0.80203 1.21455 1.22139 1.19783 0.92669 0.92882 0.93367 0.90005 0.89992 0.84030 0.83944 0.81594 0.83125 0.69712 0.87390 0.89381 0.91739 0.91266 0.96850 0.96305 0.79083 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.39 71.98 0.60 -3.01 16 2 C -0.09 -2.22 2.72 -10.57 -0.03 -2.25 16 3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.12 2.85 5.87 86.51 0.51 3.36 16 5 N -0.60 -13.86 2.40 -818.07 -1.97 -15.82 16 6 C 0.50 12.83 7.77 87.66 0.68 13.51 16 7 O -0.58 -18.71 15.84 -3.03 -0.05 -18.76 16 8 C 0.10 1.86 4.52 85.63 0.39 2.25 16 9 N -0.57 -11.12 2.09 -777.22 -1.63 -12.74 16 10 C 0.51 8.85 8.32 87.94 0.73 9.59 16 11 O -0.50 -12.07 17.76 -2.87 -0.05 -12.12 16 12 C 0.08 0.43 7.97 85.76 0.68 1.11 16 13 N -0.71 -6.45 6.58 -480.30 -3.16 -9.61 16 14 C 0.70 13.79 8.62 179.44 1.55 15.34 16 15 O -0.58 -16.13 17.48 -3.82 -0.07 -16.20 16 16 C 0.11 2.18 6.34 86.36 0.55 2.73 16 17 C -0.12 -3.32 4.91 30.67 0.15 -3.17 16 18 C -0.08 -2.32 1.96 -10.77 -0.02 -2.34 16 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 20 C 0.16 6.15 5.18 86.38 0.45 6.60 16 21 N -0.74 -36.60 5.32 -343.45 -1.83 -38.42 16 22 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 23 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 25 N -0.97 -58.00 13.06 21.65 0.28 -57.72 16 26 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 30 H 0.05 1.51 6.58 -2.39 -0.02 1.50 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.32 5.97 -2.39 -0.01 1.31 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.12 7.00 -2.39 -0.02 2.11 16 35 H 0.14 2.27 7.55 -2.39 -0.02 2.25 16 36 H 0.14 2.28 7.66 -2.39 -0.02 2.27 16 37 H 0.17 -0.31 8.14 -2.38 -0.02 -0.33 16 38 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.46 1.64 8.96 -92.71 -0.83 0.81 16 40 H 0.11 1.61 5.93 -2.39 -0.01 1.59 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.81 6.34 -2.39 -0.02 1.80 16 43 H 0.07 2.21 7.15 -2.38 -0.02 2.19 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.02 0.75 6.74 -2.39 -0.02 0.74 16 46 H 0.38 19.39 6.85 -92.71 -0.64 18.76 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -82.14 377.50 0.67 -81.47 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.44 Total: 24.60 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 7.54 Total: 27.37 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -8.30 Total: -134.32 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.17 Total: -47.08 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -82.14 0.67 -81.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185641763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.930 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds