Wall clock time and date at job start Tue Mar 31 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.46508 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.34765 * 124.17352 * 89.99922 * 9 8 6 11 11 O 1.21233 * 127.16356 * 359.92367 * 10 9 8 12 12 C 1.51589 * 105.68156 * 179.97438 * 10 9 8 13 13 N 1.47313 * 103.58877 * 359.97438 * 12 10 9 14 14 C 1.33785 * 124.17778 * 269.69564 * 9 8 6 15 15 O 1.21542 * 123.77243 * 0.04081 * 14 9 8 16 16 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 17 17 C 1.53196 * 108.77435 * 306.38547 * 16 5 4 18 18 C 1.53037 * 109.31040 * 54.63686 * 17 16 5 19 19 H 1.09000 * 109.46257 * 58.65576 * 18 17 16 20 20 C 1.53002 * 109.45877 * 178.61574 * 18 17 16 21 21 N 1.46495 * 109.47357 * 294.99798 * 20 18 17 22 22 C 1.36934 * 120.00240 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00022 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99880 * 180.02562 * 22 21 20 25 25 N 1.31614 * 119.99920 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00033 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 89.99962 * 26 24 22 28 28 H 1.48499 * 109.46901 * 209.99946 * 26 24 22 29 29 H 1.48501 * 109.47261 * 329.99952 * 26 24 22 30 30 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 32 32 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 33 33 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 34 34 H 1.08995 * 109.58555 * 305.16945 * 4 2 1 35 35 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 36 36 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 37 37 H 1.08991 * 110.60096 * 118.52463 * 12 10 9 38 38 H 1.09001 * 110.59752 * 241.31973 * 12 10 9 39 39 H 0.97006 * 126.68215 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.58534 * 186.60110 * 16 5 4 41 41 H 1.08999 * 109.58994 * 66.17463 * 16 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 17 16 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 17 16 5 44 44 H 1.09004 * 109.46956 * 55.00186 * 20 18 17 45 45 H 1.09005 * 109.47248 * 174.99967 * 20 18 17 46 46 H 0.97002 * 119.99385 * 0.02562 * 21 20 18 47 47 H 0.97006 * 120.00470 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 7 6.3909 0.0508 -3.2957 10 6 6.7519 1.3406 -3.4451 11 8 6.6359 2.2325 -2.6322 12 6 7.3322 1.4445 -4.8417 13 7 7.2207 0.0723 -5.3658 14 6 6.6643 -0.6682 -4.3902 15 8 6.4330 -1.8570 -4.4930 16 6 4.1060 -1.4254 0.0296 17 6 3.5716 -0.6942 1.2652 18 6 2.0416 -0.7231 1.2480 19 1 1.6980 -1.7574 1.2348 20 6 1.5046 -0.0237 2.4984 21 7 1.8933 -0.7845 3.6884 22 6 1.5226 -0.3470 4.9320 23 1 0.9434 0.5586 5.0354 24 6 1.8914 -1.0677 6.0597 25 7 1.5348 -0.6476 7.2549 26 14 2.8939 -2.6337 5.8808 27 1 4.3409 -2.3027 5.9237 28 1 2.5651 -3.5616 6.9926 29 1 2.5726 -3.2817 4.5838 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5129 -0.8904 33 1 1.7632 -0.1574 -2.1390 34 1 1.6057 -1.7213 -1.2984 35 1 6.1317 0.0604 -1.2141 36 1 6.0591 -1.5460 -1.9773 37 1 6.7483 2.1360 -5.4490 38 1 8.3753 1.7581 -4.8012 39 1 7.4977 -0.2375 -6.2423 40 1 5.1902 -1.3228 -0.0153 41 1 3.8388 -2.4807 0.0855 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.9198 0.9824 2.5585 45 1 0.4175 0.0346 2.4435 46 1 2.4138 -1.5977 3.5955 47 1 1.7921 -1.1513 8.0429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185641765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:23 Heat of formation + Delta-G solvation = -57.079216 kcal Electronic energy + Delta-G solvation = -30167.620981 eV Core-core repulsion = 25965.954717 eV Total energy + Delta-G solvation = -4201.666264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.76756 -40.40084 -38.95122 -38.22057 -36.48355 -35.23590 -35.07051 -33.71939 -32.09702 -30.74070 -29.57093 -28.05672 -27.24023 -26.31672 -23.74711 -23.32120 -22.58964 -21.76310 -21.09897 -20.04996 -19.29824 -18.45690 -18.05314 -17.56373 -17.18429 -16.81076 -16.37000 -15.72686 -15.57999 -15.46773 -14.88004 -14.59111 -14.54355 -14.42335 -14.25309 -14.21108 -13.75393 -13.61436 -13.33540 -13.06538 -13.01117 -12.54319 -12.44921 -12.02632 -11.96530 -11.77311 -11.41347 -11.34714 -11.02581 -10.90972 -10.82170 -10.69134 -10.53818 -10.45175 -10.15913 -10.09418 -10.00237 -9.72990 -9.59083 -8.90417 -8.77599 -7.22699 -5.77500 -3.12743 1.23989 1.62679 2.30478 2.48031 2.69030 2.89390 3.34589 3.36030 3.43275 3.54368 4.11145 4.27491 4.50579 4.57367 4.59652 4.64300 4.73871 4.76062 4.85280 4.92105 4.95339 5.14039 5.16757 5.28742 5.37178 5.52224 5.58445 5.66988 5.68219 5.74193 5.77505 5.87714 6.09015 6.14935 6.17945 6.28180 6.30160 6.35939 6.41109 6.57037 6.72302 6.80122 6.93185 7.13068 7.67190 7.85653 7.99269 8.41554 9.20805 9.93003 10.12982 11.41114 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002579 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.570270 B =10852.974433 C =11365.609685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.119 3.881 5 N -0.603 5.603 6 C 0.505 3.495 7 O -0.537 6.537 8 C 0.100 3.900 9 N -0.562 5.562 10 C 0.524 3.476 11 O -0.462 6.462 12 C 0.066 3.934 13 N -0.727 5.727 14 C 0.708 3.292 15 O -0.540 6.540 16 C 0.102 3.898 17 C -0.129 4.129 18 C -0.093 4.093 19 H 0.073 0.927 20 C 0.161 3.839 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.442 0.558 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.033 0.967 46 H 0.359 0.641 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.397 1.304 -27.143 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.003 4.003 5 N -0.336 5.336 6 C 0.291 3.709 7 O -0.414 6.414 8 C -0.025 4.025 9 N -0.308 5.308 10 C 0.311 3.689 11 O -0.331 6.331 12 C -0.062 4.062 13 N -0.392 5.392 14 C 0.408 3.592 15 O -0.413 6.413 16 C -0.021 4.021 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.287 0.713 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.051 0.949 46 H 0.192 0.808 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.793 1.543 -26.996 29.500 hybrid contribution 0.806 -1.275 -0.172 1.518 sum 12.598 0.268 -27.168 29.948 Atomic orbital electron populations 1.21835 0.94127 1.02263 1.02296 1.21453 0.96330 1.00031 0.93811 0.90635 1.21744 0.78163 1.01085 0.99350 1.48074 1.07313 1.60285 1.17945 1.20618 0.89079 0.78105 0.83056 1.90699 1.75000 1.44647 1.31017 1.21543 0.91330 1.03250 0.86407 1.45845 1.57201 1.11723 1.16060 1.20915 0.76762 0.81629 0.89548 1.90860 1.52205 1.41713 1.48316 1.22450 1.04791 0.86321 0.92598 1.45339 1.66916 1.09283 1.17712 1.15750 0.78051 0.85034 0.80325 1.91030 1.57469 1.12150 1.80700 1.21956 0.97786 0.97925 0.84426 1.21973 0.96332 1.01571 0.96849 1.21399 0.94544 1.00336 0.94962 0.90905 1.20736 0.97270 0.94120 0.84510 1.42726 1.66337 1.28424 1.02618 1.19061 1.28492 1.07793 0.81876 0.89299 1.24681 1.00791 0.98692 0.95125 1.69700 1.50934 1.40613 0.97051 0.86553 0.80595 0.84476 0.76939 1.21069 1.21774 1.20342 0.92473 0.91091 0.92880 0.89126 0.91250 0.85449 0.85448 0.85681 0.85695 0.71338 0.90032 0.90555 0.89729 0.91084 0.95629 0.94948 0.80762 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.16 0.33 -1.37 16 2 C -0.10 -1.18 2.41 -90.50 -0.22 -1.40 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.40 5.72 -3.71 -0.02 1.38 16 5 N -0.60 -6.98 2.97 -172.77 -0.51 -7.50 16 6 C 0.51 6.42 7.77 -10.99 -0.09 6.34 16 7 O -0.54 -8.60 15.84 5.56 0.09 -8.51 16 8 C 0.10 0.96 4.53 -5.19 -0.02 0.94 16 9 N -0.56 -5.59 2.09 -122.02 -0.26 -5.84 16 10 C 0.52 4.74 8.32 -10.55 -0.09 4.65 16 11 O -0.46 -5.61 17.76 5.60 0.10 -5.51 16 12 C 0.07 0.27 7.97 -4.31 -0.03 0.24 16 13 N -0.73 -4.00 6.58 -65.74 -0.43 -4.44 16 14 C 0.71 7.14 8.62 -88.03 -0.76 6.39 16 15 O -0.54 -7.36 17.48 5.33 0.09 -7.27 16 16 C 0.10 1.01 6.34 -3.71 -0.02 0.98 16 17 C -0.13 -1.63 5.25 -26.61 -0.14 -1.77 16 18 C -0.09 -1.31 1.73 -90.58 -0.16 -1.47 16 19 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 20 C 0.16 2.95 5.41 -4.04 -0.02 2.93 16 21 N -0.76 -17.28 5.12 -59.91 -0.31 -17.59 16 22 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 26 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.13 1.01 7.56 -51.93 -0.39 0.62 16 36 H 0.13 1.02 7.65 -51.93 -0.40 0.62 16 37 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.44 1.26 8.96 -40.82 -0.37 0.90 16 40 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 46 H 0.36 7.92 4.71 -40.82 -0.19 7.72 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -38.52 378.35 -7.82 -46.34 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.86 Total: 5.30 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.50 Total: 10.88 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.73 Total: -63.84 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.28 Total: -21.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.52 -7.82 -46.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185641765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.740 kcal (2) G-P(sol) polarization free energy of solvation -38.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds