Wall clock time and date at job start Tue Mar 31 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49823 * 2 1 4 4 C 1.53198 * 109.49740 * 239.94204 * 2 1 3 5 5 N 1.46926 * 108.77416 * 185.37661 * 4 2 1 6 6 C 1.34778 * 120.62819 * 233.62895 * 5 4 2 7 7 O 1.21280 * 120.00314 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99794 * 179.97438 * 6 5 4 9 9 N 1.46508 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.34765 * 124.17352 * 89.99922 * 9 8 6 11 11 O 1.21233 * 127.16356 * 359.92367 * 10 9 8 12 12 C 1.51589 * 105.68156 * 179.97438 * 10 9 8 13 13 N 1.47313 * 103.58877 * 359.97438 * 12 10 9 14 14 C 1.33785 * 124.17778 * 269.69564 * 9 8 6 15 15 O 1.21542 * 123.77243 * 0.04081 * 14 9 8 16 16 C 1.46920 * 118.73951 * 53.61367 * 5 4 2 17 17 C 1.53196 * 108.77435 * 306.38547 * 16 5 4 18 18 C 1.53037 * 109.31040 * 54.63686 * 17 16 5 19 19 H 1.09000 * 109.46257 * 58.65576 * 18 17 16 20 20 C 1.53002 * 109.45877 * 178.61574 * 18 17 16 21 21 N 1.46495 * 109.47357 * 294.99798 * 20 18 17 22 22 C 1.36934 * 120.00240 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00022 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99880 * 180.02562 * 22 21 20 25 25 N 1.31614 * 119.99920 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00033 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47104 * 89.99962 * 26 24 22 28 28 H 1.48499 * 109.46901 * 209.99946 * 26 24 22 29 29 H 1.48501 * 109.47261 * 329.99952 * 26 24 22 30 30 H 1.09002 * 109.46884 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46746 * 300.05564 * 1 2 3 32 32 H 1.08994 * 109.47535 * 60.05856 * 1 2 3 33 33 H 1.08998 * 109.58454 * 65.59195 * 4 2 1 34 34 H 1.08995 * 109.58555 * 305.16945 * 4 2 1 35 35 H 1.09001 * 109.47247 * 299.99486 * 8 6 5 36 36 H 1.08995 * 109.47466 * 59.99868 * 8 6 5 37 37 H 1.08991 * 110.60096 * 118.52463 * 12 10 9 38 38 H 1.09001 * 110.59752 * 241.31973 * 12 10 9 39 39 H 0.97006 * 126.68215 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.58534 * 186.60110 * 16 5 4 41 41 H 1.08999 * 109.58994 * 66.17463 * 16 5 4 42 42 H 1.08999 * 109.50112 * 174.59220 * 17 16 5 43 43 H 1.09004 * 109.49641 * 294.68461 * 17 16 5 44 44 H 1.09004 * 109.46956 * 55.00186 * 20 18 17 45 45 H 1.09005 * 109.47248 * 174.99967 * 20 18 17 46 46 H 0.97002 * 119.99385 * 0.02562 * 21 20 18 47 47 H 0.97006 * 120.00470 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5047 -0.8279 -1.1704 6 6 4.2807 -0.3838 -2.1789 7 8 3.7722 0.1074 -3.1643 8 6 5.7802 -0.4975 -2.0821 9 7 6.3909 0.0508 -3.2957 10 6 6.7519 1.3406 -3.4451 11 8 6.6359 2.2325 -2.6322 12 6 7.3322 1.4445 -4.8417 13 7 7.2207 0.0723 -5.3658 14 6 6.6643 -0.6682 -4.3902 15 8 6.4330 -1.8570 -4.4930 16 6 4.1060 -1.4254 0.0296 17 6 3.5716 -0.6942 1.2652 18 6 2.0416 -0.7231 1.2480 19 1 1.6980 -1.7574 1.2348 20 6 1.5046 -0.0237 2.4984 21 7 1.8933 -0.7845 3.6884 22 6 1.5226 -0.3470 4.9320 23 1 0.9434 0.5586 5.0354 24 6 1.8914 -1.0677 6.0597 25 7 1.5348 -0.6476 7.2549 26 14 2.8939 -2.6337 5.8808 27 1 4.3409 -2.3027 5.9237 28 1 2.5651 -3.5616 6.9926 29 1 2.5726 -3.2817 4.5838 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5147 0.8895 32 1 -0.3634 0.5129 -0.8904 33 1 1.7632 -0.1574 -2.1390 34 1 1.6057 -1.7213 -1.2984 35 1 6.1317 0.0604 -1.2141 36 1 6.0591 -1.5460 -1.9773 37 1 6.7483 2.1360 -5.4490 38 1 8.3753 1.7581 -4.8012 39 1 7.4977 -0.2375 -6.2423 40 1 5.1902 -1.3228 -0.0153 41 1 3.8388 -2.4807 0.0855 42 1 3.9348 -1.1888 2.1661 43 1 3.9162 0.3398 1.2534 44 1 1.9198 0.9824 2.5585 45 1 0.4175 0.0346 2.4435 46 1 2.4138 -1.5977 3.5955 47 1 1.7921 -1.1513 8.0429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185641765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:22 Heat of formation + Delta-G solvation = -87.170848 kcal Electronic energy + Delta-G solvation = -30168.925852 eV Core-core repulsion = 25965.954717 eV Total energy + Delta-G solvation = -4202.971135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43062 -41.36204 -39.70915 -39.32485 -37.22957 -36.73183 -35.75933 -35.04998 -33.61673 -32.35758 -30.36248 -28.69157 -28.52976 -27.25404 -25.29467 -23.98290 -23.83213 -22.83335 -22.22404 -21.11858 -20.22344 -19.62977 -19.11418 -18.76218 -17.89542 -17.60369 -17.17335 -16.69791 -16.53766 -16.32604 -16.22456 -15.94805 -15.64425 -15.32843 -15.27557 -15.01658 -14.86631 -14.65871 -14.53505 -14.23876 -14.10235 -13.93153 -13.39056 -13.23801 -13.16296 -12.94918 -12.85374 -12.70366 -12.19323 -12.16863 -12.00778 -11.84544 -11.74590 -11.66413 -11.44884 -11.41540 -11.26205 -10.93762 -10.70341 -10.42411 -9.75524 -9.26120 -8.00906 -5.34516 0.58649 0.98625 1.37075 1.38994 1.44273 1.51675 1.72422 2.06857 2.26055 2.50826 3.01184 3.27854 3.30387 3.52130 3.68065 3.69965 3.80103 3.95282 4.02909 4.05705 4.19241 4.27759 4.30069 4.30650 4.38647 4.47515 4.59858 4.63442 4.63912 4.71122 4.76847 4.81058 4.97658 5.05294 5.09897 5.16233 5.23940 5.32370 5.45232 5.55393 5.77499 5.80383 5.94798 6.20012 6.22774 6.32751 6.90669 7.06062 7.10248 7.85737 8.06939 9.20916 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.002579 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.570270 B =10852.974433 C =11365.609685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.063 0.937 4 C 0.122 3.878 5 N -0.602 5.602 6 C 0.499 3.501 7 O -0.577 6.577 8 C 0.096 3.904 9 N -0.569 5.569 10 C 0.515 3.485 11 O -0.501 6.501 12 C 0.077 3.923 13 N -0.707 5.707 14 C 0.700 3.300 15 O -0.583 6.583 16 C 0.104 3.896 17 C -0.128 4.128 18 C -0.084 4.084 19 H 0.080 0.920 20 C 0.159 3.841 21 N -0.753 5.753 22 C -0.235 4.235 23 H 0.050 0.950 24 C -0.068 4.068 25 N -0.987 5.987 26 Si 0.958 3.042 27 H -0.274 1.274 28 H -0.299 1.299 29 H -0.245 1.245 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.455 0.545 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.014 0.986 45 H 0.028 0.972 46 H 0.368 0.632 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.549 -0.086 -29.696 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.081 0.919 4 C 0.000 4.000 5 N -0.334 5.334 6 C 0.287 3.713 7 O -0.457 6.457 8 C -0.029 4.029 9 N -0.314 5.314 10 C 0.305 3.695 11 O -0.373 6.373 12 C -0.050 4.050 13 N -0.372 5.372 14 C 0.400 3.600 15 O -0.460 6.460 16 C -0.017 4.017 17 C -0.166 4.166 18 C -0.103 4.103 19 H 0.098 0.902 20 C 0.033 3.967 21 N -0.400 5.400 22 C -0.366 4.366 23 H 0.068 0.932 24 C -0.259 4.259 25 N -0.638 5.638 26 Si 0.785 3.215 27 H -0.199 1.199 28 H -0.226 1.226 29 H -0.169 1.169 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.303 0.697 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.032 0.968 45 H 0.046 0.954 46 H 0.202 0.798 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.969 0.173 -29.628 32.757 hybrid contribution 0.054 -0.689 0.610 0.922 sum 14.024 -0.516 -29.018 32.233 Atomic orbital electron populations 1.21809 0.93546 1.02772 1.02191 1.21336 0.96782 0.99186 0.93362 0.91895 1.21673 0.78687 1.01500 0.98170 1.48166 1.07196 1.59826 1.18239 1.21175 0.90366 0.77210 0.82552 1.90670 1.75946 1.46465 1.32595 1.21676 0.89185 1.04733 0.87277 1.46013 1.56940 1.12317 1.16171 1.21728 0.76040 0.80730 0.91028 1.90839 1.53954 1.42506 1.50000 1.22712 1.07186 0.85617 0.89436 1.45323 1.65152 1.09388 1.17353 1.15971 0.78240 0.84762 0.80995 1.90995 1.59522 1.13969 1.81524 1.22078 0.99407 0.98094 0.82141 1.21932 0.95075 1.01535 0.98085 1.21297 0.95683 1.00142 0.93132 0.90155 1.20864 0.97127 0.93675 0.85036 1.42665 1.66251 1.29004 1.02051 1.19015 1.27091 1.06319 0.84178 0.93188 1.25589 1.02777 1.03018 0.94530 1.69904 1.53111 1.42644 0.98113 0.85362 0.78859 0.79349 0.77968 1.19941 1.22628 1.16922 0.91640 0.92610 0.91583 0.90254 0.89807 0.83836 0.83686 0.83173 0.81566 0.69704 0.87077 0.88836 0.90378 0.91937 0.96823 0.95362 0.79813 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.82 71.98 0.63 -2.58 16 2 C -0.09 -2.04 2.41 -10.71 -0.03 -2.07 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.69 5.72 86.36 0.49 3.18 16 5 N -0.60 -12.82 2.97 -818.91 -2.43 -15.26 16 6 C 0.50 12.09 7.77 87.66 0.68 12.77 16 7 O -0.58 -18.28 15.84 -3.03 -0.05 -18.33 16 8 C 0.10 1.70 4.53 85.63 0.39 2.08 16 9 N -0.57 -10.44 2.09 -777.22 -1.63 -12.07 16 10 C 0.51 8.40 8.32 87.94 0.73 9.13 16 11 O -0.50 -11.71 17.76 -2.88 -0.05 -11.76 16 12 C 0.08 0.37 7.97 85.76 0.68 1.05 16 13 N -0.71 -5.85 6.58 -480.32 -3.16 -9.02 16 14 C 0.70 13.00 8.62 179.44 1.55 14.55 16 15 O -0.58 -15.36 17.48 -3.85 -0.07 -15.42 16 16 C 0.10 1.76 6.34 86.37 0.55 2.31 16 17 C -0.13 -2.98 5.25 30.67 0.16 -2.82 16 18 C -0.08 -2.22 1.73 -10.77 -0.02 -2.24 16 19 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.16 5.83 5.41 86.38 0.47 6.30 16 21 N -0.75 -34.02 5.12 -343.45 -1.76 -35.77 16 22 C -0.23 -13.38 10.47 84.03 0.88 -12.50 16 23 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 24 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 25 N -0.99 -63.46 13.97 21.65 0.30 -63.16 16 26 Si 0.96 44.11 27.74 68.60 1.90 46.02 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.40 6.30 -2.39 -0.02 1.38 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.97 7.00 -2.39 -0.02 1.96 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.14 2.00 7.56 -2.39 -0.02 1.98 16 36 H 0.15 1.99 7.65 -2.39 -0.02 1.97 16 37 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.46 1.28 8.96 -92.70 -0.83 0.45 16 40 H 0.11 1.24 5.93 -2.39 -0.01 1.23 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.03 1.08 6.14 -2.38 -0.01 1.06 16 46 H 0.37 15.36 4.71 -92.71 -0.44 14.92 16 47 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -87.63 378.35 0.39 -87.24 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.31 Total: 21.89 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 7.64 Total: 25.64 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -8.68 Total: -135.27 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.17 Total: -45.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.02 kcal Total: -87.63 0.39 -87.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185641765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.070 kcal (2) G-P(sol) polarization free energy of solvation -87.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds