Wall clock time and date at job start Tue Mar 31 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.49661 * 2 1 4 4 C 1.52765 * 109.38464 * 120.07837 * 2 1 3 5 5 N 1.46929 * 109.01003 * 65.51318 * 4 2 1 6 6 C 1.34777 * 120.63092 * 233.58656 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.71529 * 6 5 4 8 8 C 1.50702 * 119.99928 * 179.97438 * 6 5 4 9 9 N 1.46491 * 109.46957 * 179.72354 * 8 6 5 10 10 C 1.34773 * 124.18111 * 90.00165 * 9 8 6 11 11 O 1.21228 * 127.15623 * 359.92080 * 10 9 8 12 12 C 1.51577 * 105.68679 * 179.97438 * 10 9 8 13 13 N 1.47312 * 103.59665 * 359.97438 * 12 10 9 14 14 C 1.33796 * 124.17833 * 269.69776 * 9 8 6 15 15 O 1.21542 * 123.76678 * 0.03773 * 14 9 8 16 16 C 1.46923 * 118.73574 * 53.30543 * 5 4 2 17 17 C 1.53188 * 108.78248 * 306.64745 * 16 5 4 18 18 C 1.53041 * 109.31323 * 54.63155 * 17 16 5 19 19 H 1.09004 * 109.45546 * 58.65884 * 18 17 16 20 20 C 1.53001 * 109.46137 * 178.63051 * 18 17 16 21 21 N 1.46495 * 109.47233 * 295.00533 * 20 18 17 22 22 C 1.36937 * 120.00251 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99527 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00301 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00184 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99940 * 359.97438 * 24 22 21 27 27 H 1.48493 * 109.47071 * 90.00485 * 26 24 22 28 28 H 1.48508 * 109.46871 * 210.00300 * 26 24 22 29 29 H 1.48490 * 109.46974 * 330.00025 * 26 24 22 30 30 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47329 * 300.06641 * 1 2 3 32 32 H 1.09001 * 109.46819 * 60.06399 * 1 2 3 33 33 H 1.09003 * 109.50995 * 305.62893 * 4 2 1 34 34 H 1.09003 * 109.42963 * 185.34748 * 4 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 8 6 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 37 37 H 1.08996 * 110.60505 * 118.52366 * 12 10 9 38 38 H 1.09004 * 110.60171 * 241.31580 * 12 10 9 39 39 H 0.96996 * 126.69766 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.58890 * 66.43452 * 16 5 4 41 41 H 1.08997 * 109.58518 * 186.85243 * 16 5 4 42 42 H 1.08997 * 109.49933 * 174.58934 * 17 16 5 43 43 H 1.09003 * 109.49114 * 294.65356 * 17 16 5 44 44 H 1.09008 * 109.46767 * 55.00152 * 20 18 17 45 45 H 1.08994 * 109.47086 * 174.99850 * 20 18 17 46 46 H 0.97004 * 119.99840 * 359.97438 * 21 20 18 47 47 H 0.96998 * 119.99790 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0370 -0.7222 1.2470 5 7 1.6527 -2.1382 1.1694 6 6 0.9757 -2.7223 2.1779 7 8 0.6824 -2.0794 3.1636 8 6 0.5881 -4.1755 2.0831 9 7 -0.1278 -4.5702 3.2987 10 6 -1.4642 -4.4856 3.4516 11 8 -2.2699 -4.0825 2.6404 12 6 -1.7500 -4.9979 4.8492 13 7 -0.4166 -5.3449 5.3703 14 6 0.4636 -5.0647 4.3923 15 8 1.6624 -5.2383 4.4920 16 6 2.0152 -2.9038 -0.0311 17 6 1.5036 -2.1557 -1.2661 18 6 2.0408 -0.7228 -1.2485 19 1 3.1305 -0.7437 -1.2358 20 6 1.5598 0.0173 -2.4983 21 7 2.1467 -0.6022 -3.6889 22 6 1.8580 -0.1057 -4.9321 23 1 1.1972 0.7424 -5.0346 24 6 2.4146 -0.6924 -6.0602 25 7 2.1367 -0.2155 -7.2551 26 14 3.5581 -2.1589 -5.8826 27 1 2.7646 -3.4133 -5.9263 28 1 4.5422 -2.1567 -6.9948 29 1 4.2763 -2.0723 -4.5859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.5933 -0.2712 2.1346 34 1 3.1228 -0.6405 1.2970 35 1 -0.0570 -4.3238 1.2171 36 1 1.4857 -4.7846 1.9761 37 1 -2.2087 -4.2182 5.4572 38 1 -2.3903 -5.8793 4.8111 39 1 -0.2131 -5.7079 6.2465 40 1 3.0991 -3.0036 -0.0874 41 1 1.5571 -3.8918 0.0135 42 1 1.8486 -2.6626 -2.1673 43 1 0.4138 -2.1364 -1.2542 44 1 0.4728 -0.0388 -2.5579 45 1 1.8671 1.0615 -2.4430 46 1 2.7405 -1.3638 -3.5967 47 1 2.5260 -0.6253 -8.0434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185641766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:27 Heat of formation + Delta-G solvation = -54.155404 kcal Electronic energy + Delta-G solvation = -30428.729964 eV Core-core repulsion = 26227.190486 eV Total energy + Delta-G solvation = -4201.539478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76624 -40.52062 -38.95123 -38.28033 -36.48285 -35.20364 -35.06011 -33.54447 -31.93955 -30.72903 -29.47833 -28.04161 -27.34746 -26.41280 -23.68056 -23.33807 -23.09431 -21.91619 -21.09863 -19.95204 -18.61275 -18.45656 -18.14011 -17.43856 -17.18026 -16.81145 -16.30655 -15.78604 -15.67341 -15.41745 -14.97545 -14.57600 -14.54544 -14.38284 -14.26374 -14.16948 -13.92371 -13.67148 -13.46272 -13.06586 -12.77530 -12.63744 -12.48938 -12.30642 -11.68214 -11.53531 -11.42232 -11.37847 -11.08118 -10.86652 -10.80507 -10.68962 -10.52287 -10.32094 -10.18917 -10.10458 -10.00109 -9.71204 -9.59082 -8.89696 -8.76532 -7.22944 -5.77468 -3.12799 1.24056 1.62923 2.32047 2.48498 2.69100 2.90513 3.34672 3.36086 3.43313 3.54471 4.11850 4.27543 4.50501 4.57382 4.59616 4.64367 4.74389 4.78201 4.87299 4.94105 4.97612 5.11554 5.15222 5.29226 5.41605 5.53265 5.59468 5.66241 5.70525 5.73457 5.81252 5.90746 6.08161 6.14781 6.26856 6.28313 6.28938 6.33170 6.49431 6.57114 6.68694 6.81575 6.93282 7.14599 7.67347 7.87290 7.99288 8.41648 9.20870 9.93040 10.12953 11.41153 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019451 B = 0.002584 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.198094 B =10831.661850 C =11132.307185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.506 3.494 7 O -0.536 6.536 8 C 0.099 3.901 9 N -0.562 5.562 10 C 0.524 3.476 11 O -0.462 6.462 12 C 0.066 3.934 13 N -0.728 5.728 14 C 0.708 3.292 15 O -0.540 6.540 16 C 0.102 3.898 17 C -0.131 4.131 18 C -0.093 4.093 19 H 0.072 0.928 20 C 0.163 3.837 21 N -0.755 5.755 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.442 0.558 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.026 0.974 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 -11.706 27.182 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.292 3.708 7 O -0.413 6.413 8 C -0.026 4.026 9 N -0.308 5.308 10 C 0.312 3.688 11 O -0.331 6.331 12 C -0.062 4.062 13 N -0.393 5.393 14 C 0.408 3.592 15 O -0.413 6.413 16 C -0.021 4.021 17 C -0.169 4.169 18 C -0.112 4.112 19 H 0.090 0.910 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.287 0.713 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.192 0.808 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.916 -11.051 27.033 29.797 hybrid contribution 0.969 -1.148 0.168 1.512 sum -4.946 -12.199 27.201 30.218 Atomic orbital electron populations 1.21871 0.94665 1.02015 1.01721 1.21397 0.96864 0.99621 0.93882 0.89681 1.21629 0.99613 0.79745 0.99397 1.48025 1.55546 1.11866 1.17886 1.20590 0.78000 0.89141 0.83100 1.90699 1.54698 1.64920 1.30996 1.21542 1.00016 0.94692 0.86316 1.45842 1.09514 1.59444 1.16010 1.20910 0.81675 0.76716 0.89548 1.90857 1.50867 1.42878 1.48481 1.22448 0.87191 1.03896 0.92634 1.45339 1.06482 1.69782 1.17654 1.15757 0.85373 0.77703 0.80332 1.91030 1.11764 1.57795 1.80756 1.21945 1.00987 0.94685 0.84468 1.22012 1.01979 0.96141 0.96801 1.21363 1.00294 0.94590 0.94929 0.90966 1.20693 0.96344 0.94880 0.84530 1.42732 1.57205 1.37566 1.02620 1.19062 1.23973 1.12295 0.81895 0.89302 1.24682 1.00288 0.99193 0.95127 1.69704 1.48334 1.43224 0.97048 0.86550 0.81267 0.83796 0.76932 1.21065 1.21781 1.20349 0.92649 0.93248 0.91719 0.89075 0.91316 0.85519 0.85478 0.85688 0.85706 0.71345 0.90573 0.90095 0.89865 0.90708 0.95163 0.95610 0.80752 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.38 37.16 0.31 -1.52 16 2 C -0.10 -1.18 2.71 -90.72 -0.25 -1.43 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.36 5.79 -3.93 -0.02 1.34 16 5 N -0.60 -6.78 2.42 -173.03 -0.42 -7.20 16 6 C 0.51 6.32 7.77 -10.98 -0.09 6.23 16 7 O -0.54 -8.47 15.84 5.55 0.09 -8.38 16 8 C 0.10 0.95 4.53 -5.20 -0.02 0.93 16 9 N -0.56 -5.55 2.09 -122.03 -0.26 -5.80 16 10 C 0.52 4.70 8.31 -10.56 -0.09 4.61 16 11 O -0.46 -5.56 17.76 5.60 0.10 -5.46 16 12 C 0.07 0.27 7.97 -4.32 -0.03 0.23 16 13 N -0.73 -3.99 6.58 -65.74 -0.43 -4.42 16 14 C 0.71 7.12 8.62 -88.01 -0.76 6.36 16 15 O -0.54 -7.34 17.48 5.33 0.09 -7.25 16 16 C 0.10 1.00 6.34 -3.71 -0.02 0.97 16 17 C -0.13 -1.64 4.90 -26.61 -0.13 -1.78 16 18 C -0.09 -1.29 1.96 -90.58 -0.18 -1.47 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 20 C 0.16 2.98 5.18 -4.04 -0.02 2.96 16 21 N -0.76 -17.28 5.12 -59.91 -0.31 -17.59 16 22 C -0.24 -6.78 10.47 -15.06 -0.16 -6.93 16 23 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 24 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 25 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 26 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 30 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.86 6.58 -51.93 -0.34 0.51 16 33 H 0.09 1.15 7.01 -51.93 -0.36 0.78 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.13 1.00 7.56 -51.93 -0.39 0.61 16 36 H 0.13 1.01 7.65 -51.93 -0.40 0.62 16 37 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.44 1.26 8.96 -40.82 -0.37 0.89 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.59 5.94 -51.93 -0.31 0.28 16 42 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 43 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 44 H 0.03 0.57 6.74 -51.92 -0.35 0.23 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.36 7.91 4.71 -40.82 -0.19 7.72 16 47 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -38.43 374.30 -7.68 -46.11 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.70 Total: 5.44 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.55 Total: 10.49 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.64 Total: -63.51 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.28 Total: -21.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.43 -7.68 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185641766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.045 kcal (2) G-P(sol) polarization free energy of solvation -38.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds