Wall clock time and date at job start Tue Mar 31 2020 22:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08995 * 109.47426 * 2 1
4 4 O 1.42902 * 109.47088 * 120.00729 * 2 1 3
5 5 C 1.42905 * 113.99573 * 269.99456 * 4 2 1
6 6 C 1.50695 * 109.47259 * 180.02562 * 5 4 2
7 7 O 1.21287 * 119.99704 * 0.02562 * 6 5 4
8 8 N 1.34775 * 120.00296 * 179.97438 * 6 5 4
9 9 C 1.46500 * 120.00066 * 180.02562 * 8 6 5
10 10 H 1.08994 * 110.64483 * 36.68912 * 9 8 6
11 11 C 1.54329 * 110.71568 * 273.54446 * 9 8 6
12 12 N 1.47028 * 107.26828 * 219.44268 * 11 9 8
13 13 C 1.36938 * 125.64561 * 178.97819 * 12 11 9
14 14 H 1.08001 * 119.99692 * 0.02562 * 13 12 11
15 15 C 1.38811 * 119.99860 * 180.02562 * 13 12 11
16 16 N 1.31619 * 120.00110 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 120.00018 * 180.02562 * 15 13 12
18 18 H 1.48496 * 109.46968 * 0.02562 * 17 15 13
19 19 H 1.48495 * 109.46795 * 120.00220 * 17 15 13
20 20 H 1.48505 * 109.47074 * 240.00244 * 17 15 13
21 21 C 1.47423 * 108.70385 * 358.94245 * 12 11 9
22 22 C 1.54916 * 104.83061 * 24.13180 * 21 12 11
23 23 H 1.08995 * 111.01027 * 81.06193 * 22 21 12
24 24 O 1.42904 * 110.99835 * 204.91339 * 22 21 12
25 25 C 1.50706 * 109.46734 * 239.99892 * 2 1 3
26 26 N 1.30492 * 125.65503 * 284.96010 * 25 2 1
27 27 C 1.34129 * 109.26061 * 180.02562 * 26 25 2
28 28 C 1.34668 * 108.01593 * 359.73617 * 27 26 25
29 29 N 1.35047 * 125.64434 * 104.99934 * 25 2 1
30 30 C 1.46499 * 126.40026 * 359.96952 * 29 25 2
31 31 H 1.08998 * 109.47248 * 59.99597 * 1 2 3
32 32 H 1.09002 * 109.47316 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46443 * 299.99638 * 1 2 3
34 34 H 1.09000 * 109.47363 * 300.00355 * 5 4 2
35 35 H 1.09005 * 109.46816 * 59.99890 * 5 4 2
36 36 H 0.97003 * 119.99467 * 0.02562 * 8 6 5
37 37 H 1.08994 * 109.88722 * 338.86191 * 11 9 8
38 38 H 1.08997 * 109.88046 * 100.02939 * 11 9 8
39 39 H 0.96999 * 120.00269 * 179.97438 * 16 15 13
40 40 H 1.09000 * 110.36420 * 142.96479 * 21 12 11
41 41 H 1.08995 * 110.37109 * 265.17779 * 21 12 11
42 42 H 0.96695 * 114.00207 * 292.19221 * 24 22 21
43 43 H 1.08001 * 125.98984 * 179.97438 * 27 26 25
44 44 H 1.08000 * 126.58882 * 180.28465 * 28 27 26
45 45 H 1.09002 * 109.47391 * 89.99540 * 30 29 25
46 46 H 1.09001 * 109.46813 * 329.99596 * 30 29 25
47 47 H 1.09004 * 109.47041 * 209.99723 * 30 29 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0064 -0.6738 1.1667
5 6 2.2002 0.1828 2.2941
6 6 2.7016 -0.6284 3.4610
7 8 2.8762 -1.8224 3.3390
8 7 2.9569 -0.0269 4.6397
9 6 3.4448 -0.8154 5.7739
10 1 4.1255 -1.5961 5.4347
11 6 2.2663 -1.4235 6.5632
12 7 2.6038 -1.3316 7.9913
13 6 1.8092 -1.7447 9.0273
14 1 0.8426 -2.1821 8.8252
15 6 2.2460 -1.6010 10.3370
16 7 3.4238 -1.0674 10.5831
17 14 1.1625 -2.1650 11.7502
18 1 -0.1021 -2.7264 11.2108
19 1 1.8727 -3.2084 12.5326
20 1 0.8556 -1.0091 12.6306
21 6 3.9395 -0.7220 8.1231
22 6 4.1309 0.0987 6.8232
23 1 3.6261 1.0623 6.8916
24 8 5.5180 0.2694 6.5249
25 6 2.0323 -0.7105 -1.2305
26 7 2.0277 -2.0018 -1.4184
27 6 2.5492 -2.2754 -2.6235
28 6 2.8845 -1.1089 -3.2068
29 7 2.5624 -0.1161 -2.3212
30 6 2.7514 1.3227 -2.5217
31 1 -0.3633 0.5139 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3632 0.5138 0.8901
34 1 2.9321 0.9512 2.0450
35 1 1.2539 0.6545 2.5588
36 1 2.8175 0.9281 4.7370
37 1 1.3549 -0.8611 6.3608
38 1 2.1305 -2.4675 6.2809
39 1 3.7289 -0.9666 11.4983
40 1 3.9733 -0.0670 8.9937
41 1 4.7035 -1.4955 8.2014
42 1 5.9890 0.8333 7.1535
43 1 2.6744 -3.2586 -3.0525
44 1 3.3252 -0.9813 -4.1846
45 1 3.7340 1.6152 -2.1516
46 1 1.9809 1.8696 -1.9781
47 1 2.6797 1.5540 -3.5845
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001198234464.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:09:26
Heat of formation + Delta-G solvation = -21.864957 kcal
Electronic energy + Delta-G solvation = -29174.276716 eV
Core-core repulsion = 24974.137457 eV
Total energy + Delta-G solvation = -4200.139259 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.36413 -39.79813 -38.37658 -37.43367 -35.08015 -34.35429 -34.01541 -32.55877
-31.73675 -29.04430 -28.92111 -27.78805 -27.37722 -26.53771 -24.37414 -23.76261
-21.63523 -20.92582 -20.50953 -20.13358 -19.86915 -17.86009 -17.23397 -17.13753
-16.79968 -16.53625 -16.24440 -15.92935 -15.41291 -15.05406 -14.78027 -14.40987
-14.22196 -13.86380 -13.79604 -13.59664 -13.33110 -13.19960 -13.14167 -12.96182
-12.86504 -12.56626 -12.29648 -12.25133 -11.86957 -11.50672 -11.35413 -11.25279
-10.97491 -10.84972 -10.15401 -10.12986 -10.00031 -9.92982 -9.87091 -9.74503
-9.68821 -9.25652 -8.77219 -8.72197 -8.67530 -6.91581 -5.72115 -3.14311
1.67143 2.27253 2.79523 2.81066 3.06777 3.37815 3.43992 3.46422
3.79116 4.06678 4.23078 4.36964 4.41991 4.56563 4.60882 4.64212
4.74948 4.81161 4.87206 4.91057 5.03358 5.16330 5.26920 5.28903
5.40144 5.42117 5.45936 5.61584 5.66662 5.86388 5.88265 5.97254
6.09528 6.19545 6.48193 6.49320 6.70145 6.72294 6.86036 6.96621
7.31789 7.53176 7.67433 7.73972 7.93472 8.08709 8.25304 8.43990
9.14341 9.74704 10.37068 11.32320
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.022863 B = 0.002037 C = 0.001965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1224.388552 B =13741.972921 C =14245.298725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.177 3.823
3 H 0.073 0.927
4 O -0.333 6.333
5 C 0.042 3.958
6 C 0.512 3.488
7 O -0.511 6.511
8 N -0.715 5.715
9 C 0.145 3.855
10 H 0.100 0.900
11 C 0.129 3.871
12 N -0.601 5.601
13 C -0.220 4.220
14 H 0.081 0.919
15 C -0.012 4.012
16 N -0.925 5.925
17 Si 0.918 3.082
18 H -0.279 1.279
19 H -0.290 1.290
20 H -0.290 1.290
21 C 0.129 3.871
22 C 0.068 3.932
23 H 0.062 0.938
24 O -0.566 6.566
25 C 0.202 3.798
26 N -0.456 5.456
27 C -0.028 4.028
28 C -0.057 4.057
29 N -0.459 5.459
30 C 0.068 3.932
31 H 0.065 0.935
32 H 0.079 0.921
33 H 0.069 0.931
34 H 0.078 0.922
35 H 0.082 0.918
36 H 0.397 0.603
37 H 0.031 0.969
38 H 0.035 0.965
39 H 0.253 0.747
40 H 0.113 0.887
41 H 0.026 0.974
42 H 0.377 0.623
43 H 0.171 0.829
44 H 0.176 0.824
45 H 0.079 0.921
46 H 0.086 0.914
47 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.208 12.488 -26.139 28.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.116 3.884
3 H 0.090 0.910
4 O -0.250 6.250
5 C -0.038 4.038
6 C 0.296 3.704
7 O -0.385 6.385
8 N -0.368 5.368
9 C 0.040 3.960
10 H 0.118 0.882
11 C 0.002 3.998
12 N -0.329 5.329
13 C -0.348 4.348
14 H 0.099 0.901
15 C -0.208 4.208
16 N -0.574 5.574
17 Si 0.748 3.252
18 H -0.204 1.204
19 H -0.217 1.217
20 H -0.217 1.217
21 C 0.003 3.997
22 C 0.007 3.993
23 H 0.080 0.920
24 O -0.371 6.371
25 C -0.060 4.060
26 N -0.174 5.174
27 C -0.177 4.177
28 C -0.190 4.190
29 N -0.143 5.143
30 C -0.075 4.075
31 H 0.083 0.917
32 H 0.098 0.902
33 H 0.088 0.912
34 H 0.096 0.904
35 H 0.100 0.900
36 H 0.231 0.769
37 H 0.049 0.951
38 H 0.053 0.947
39 H 0.063 0.937
40 H 0.131 0.869
41 H 0.044 0.956
42 H 0.224 0.776
43 H 0.189 0.811
44 H 0.193 0.807
45 H 0.097 0.903
46 H 0.105 0.895
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -1.469 10.551 -25.974 28.074
hybrid contribution -0.059 1.414 0.499 1.501
sum -1.529 11.966 -25.475 28.187
Atomic orbital electron populations
1.22250 0.93527 1.04544 1.02291 1.20029 0.94117 0.92963 0.81254
0.90965 1.88243 1.86351 1.32439 1.17946 1.22331 1.01306 0.93072
0.87108 1.20059 0.78502 0.88506 0.83350 1.90777 1.49975 1.14794
1.82908 1.45855 1.68125 1.11840 1.10984 1.22009 0.95708 0.93967
0.84307 0.88210 1.21642 0.94408 0.98314 0.85403 1.44313 1.16909
1.72229 0.99401 1.19166 0.98100 1.33120 0.84411 0.90105 1.24806
0.97195 1.01444 0.97311 1.69741 1.18897 1.50180 1.18574 0.85941
0.79341 0.77827 0.82071 1.20421 1.21664 1.21720 1.22553 0.86780
0.96072 0.94271 1.23636 0.81107 0.97646 0.96870 0.91994 1.86419
1.21935 1.73746 1.54965 1.22811 1.03212 0.89248 0.90741 1.70308
1.18609 1.11805 1.16678 1.22435 1.04389 0.98293 0.92543 1.22717
1.09913 0.88216 0.98109 1.45268 1.46695 1.07649 1.14711 1.22094
1.03496 0.77780 1.04138 0.91650 0.90234 0.91184 0.90441 0.89981
0.76892 0.95124 0.94676 0.93664 0.86933 0.95610 0.77590 0.81129
0.80676 0.90280 0.89520 0.89296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.43 9.51 37.16 0.35 -1.08 16
2 C 0.18 1.78 2.99 -27.88 -0.08 1.69 16
3 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16
4 O -0.33 -4.71 9.50 -55.14 -0.52 -5.24 16
5 C 0.04 0.47 6.23 36.00 0.22 0.69 16
6 C 0.51 8.25 7.90 -10.99 -0.09 8.16 16
7 O -0.51 -11.01 16.22 -14.36 -0.23 -11.24 16
8 N -0.72 -10.74 5.13 -52.03 -0.27 -11.00 16
9 C 0.14 2.77 2.97 -66.09 -0.20 2.58 16
10 H 0.10 2.17 7.69 -51.93 -0.40 1.77 16
11 C 0.13 2.87 6.99 -3.06 -0.02 2.84 16
12 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16
13 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16
14 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16
15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16
16 N -0.92 -26.43 10.09 55.49 0.56 -25.87 16
17 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16
18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
21 C 0.13 3.07 5.62 -2.53 -0.01 3.06 16
22 C 0.07 1.26 4.04 -24.58 -0.10 1.16 16
23 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16
24 O -0.57 -9.60 13.47 -35.23 -0.47 -10.07 16
25 C 0.20 2.41 6.79 -155.42 -1.05 1.35 16
26 N -0.46 -6.74 11.25 -10.81 -0.12 -6.86 16
27 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16
28 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16
29 N -0.46 -3.96 3.15 -121.27 -0.38 -4.34 16
30 C 0.07 0.25 10.75 59.85 0.64 0.90 16
31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16
34 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16
35 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16
36 H 0.40 4.50 8.52 -40.82 -0.35 4.16 16
37 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16
38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
40 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16
41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16
42 H 0.38 4.80 9.12 45.56 0.42 5.22 16
43 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16
44 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16
45 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16
46 H 0.09 0.19 7.33 -51.93 -0.38 -0.19 16
47 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16
LS Contribution 392.30 15.07 5.91 5.91
Total: -1.00 -39.47 392.30 -8.49 -47.96
By element:
Atomic # 1 Polarization: 12.80 SS G_CDS: -6.36 Total: 6.44 kcal
Atomic # 6 Polarization: 14.41 SS G_CDS: -0.99 Total: 13.42 kcal
Atomic # 7 Polarization: -63.34 SS G_CDS: -0.79 Total: -64.13 kcal
Atomic # 8 Polarization: -25.32 SS G_CDS: -1.23 Total: -26.55 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -39.47 -8.49 -47.96 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001198234464.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.092 kcal
(2) G-P(sol) polarization free energy of solvation -39.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds