Wall clock time and date at job start Tue Mar 31 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 O 1.42895 * 109.47602 * 239.99838 * 2 1 3 5 5 C 1.42900 * 114.00229 * 89.99707 * 4 2 1 6 6 C 1.50702 * 109.47362 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99680 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99747 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99919 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.63768 * 36.69126 * 9 8 6 11 11 C 1.54318 * 110.72354 * 273.54876 * 9 8 6 12 12 N 1.47020 * 107.27541 * 219.44404 * 11 9 8 13 13 C 1.36938 * 125.65500 * 178.97533 * 12 11 9 14 14 H 1.08008 * 119.99569 * 349.94200 * 13 12 11 15 15 C 1.38807 * 120.00232 * 169.94054 * 13 12 11 16 16 N 1.31617 * 120.00226 * 350.42138 * 15 13 12 17 17 Si 1.86804 * 119.99833 * 170.42215 * 15 13 12 18 18 H 1.48499 * 109.47156 * 94.14124 * 17 15 13 19 19 H 1.48496 * 109.47191 * 214.14007 * 17 15 13 20 20 H 1.48507 * 109.47043 * 334.14045 * 17 15 13 21 21 C 1.47433 * 108.70070 * 358.93515 * 12 11 9 22 22 C 1.54905 * 104.82717 * 24.13379 * 21 12 11 23 23 H 1.08998 * 111.01101 * 81.06378 * 22 21 12 24 24 O 1.42911 * 111.00153 * 204.91308 * 22 21 12 25 25 C 1.50699 * 109.47046 * 119.99608 * 2 1 3 26 26 N 1.30501 * 125.65289 * 75.18169 * 25 2 1 27 27 C 1.34126 * 109.25863 * 180.28906 * 26 25 2 28 28 C 1.34673 * 108.01837 * 359.72868 * 27 26 25 29 29 N 1.35051 * 125.64833 * 255.00123 * 25 2 1 30 30 C 1.46488 * 126.39864 * 359.97438 * 29 25 2 31 31 H 1.09006 * 109.46672 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47315 * 300.00130 * 1 2 3 33 33 H 1.08997 * 109.46671 * 60.00538 * 1 2 3 34 34 H 1.09005 * 109.46912 * 300.00648 * 5 4 2 35 35 H 1.09005 * 109.46918 * 59.99892 * 5 4 2 36 36 H 0.97006 * 120.00533 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.88092 * 338.85693 * 11 9 8 38 38 H 1.09002 * 109.88708 * 100.02366 * 11 9 8 39 39 H 0.96999 * 119.99799 * 179.97438 * 16 15 13 40 40 H 1.09001 * 110.36177 * 142.96646 * 21 12 11 41 41 H 1.08994 * 110.36753 * 265.18072 * 21 12 11 42 42 H 0.96700 * 114.00061 * 292.19878 * 24 22 21 43 43 H 1.07996 * 125.98956 * 179.72099 * 27 26 25 44 44 H 1.08001 * 126.58740 * 180.02562 * 28 27 26 45 45 H 1.09001 * 109.47544 * 269.71446 * 30 29 25 46 46 H 1.09000 * 109.47443 * 149.71091 * 30 29 25 47 47 H 1.09006 * 109.47310 * 29.71512 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7005 -0.6285 -3.4613 7 8 2.8736 -1.8227 -3.3398 8 7 2.9555 -0.0270 -4.6401 9 6 3.4424 -0.8156 -5.7746 10 1 2.9737 -1.7996 -5.7879 11 6 4.9796 -0.9436 -5.7311 12 7 5.4669 -0.8251 -7.1131 13 6 6.7790 -0.8656 -7.5031 14 1 7.5639 -0.8303 -6.7620 15 6 7.1002 -0.9520 -8.8507 16 7 6.1567 -1.1842 -9.7386 17 14 8.8715 -0.7386 -9.4042 18 1 9.5211 -2.0698 -9.5092 19 1 8.8988 -0.0687 -10.7292 20 1 9.6028 0.0924 -8.4142 21 6 4.3089 -0.6564 -8.0098 22 6 3.1938 -0.0668 -7.1106 23 1 3.3205 1.0085 -6.9853 24 8 1.8993 -0.3702 -7.6347 25 6 2.0323 -0.7103 1.2305 26 7 2.0302 -2.0019 1.4174 27 6 2.5445 -2.2749 2.6256 28 6 2.8836 -1.1085 3.2073 29 7 2.5625 -0.1159 2.3212 30 6 2.7525 1.3228 2.5211 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.2538 0.6546 -2.5588 35 1 2.9320 0.9514 -2.0449 36 1 2.8174 0.9283 -4.7371 37 1 5.4009 -0.1454 -5.1198 38 1 5.2594 -1.9141 -5.3213 39 1 6.3812 -1.2442 -10.6803 40 1 4.5514 0.0355 -8.8164 41 1 4.0009 -1.6195 -8.4169 42 1 1.6986 0.0749 -8.4693 43 1 2.6654 -3.2578 3.0566 44 1 3.3248 -0.9810 4.1848 45 1 3.7375 1.6134 2.1560 46 1 2.6754 1.5553 3.5832 47 1 1.9857 1.8702 1.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198234465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:31 Heat of formation + Delta-G solvation = -23.678753 kcal Electronic energy + Delta-G solvation = -29193.754897 eV Core-core repulsion = 24993.536986 eV Total energy + Delta-G solvation = -4200.217911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35214 -39.80602 -38.38781 -37.44653 -35.09215 -34.34264 -34.01015 -32.56054 -31.74106 -29.04857 -28.92124 -27.79151 -27.36528 -26.58332 -24.35438 -23.75978 -21.62504 -20.94012 -20.53612 -20.13184 -19.88713 -17.85649 -17.24546 -17.13655 -16.78427 -16.51818 -16.24448 -15.87414 -15.50942 -15.04988 -14.73181 -14.36732 -14.24723 -13.92572 -13.75159 -13.65800 -13.30274 -13.20394 -13.12990 -12.93525 -12.85242 -12.60172 -12.36016 -12.22431 -11.96402 -11.51983 -11.35462 -11.22652 -10.95931 -10.83871 -10.18568 -10.12495 -9.99697 -9.94660 -9.86121 -9.82826 -9.70353 -9.29651 -8.77220 -8.66680 -8.65496 -6.88123 -5.80164 -3.14099 1.68211 2.28299 2.79620 2.81307 3.07171 3.37535 3.43200 3.45073 3.79000 4.06946 4.24232 4.36854 4.41815 4.57752 4.58516 4.65646 4.74837 4.80595 4.88581 4.90448 5.02910 5.16877 5.24444 5.27921 5.39285 5.40249 5.46323 5.57819 5.65300 5.83743 5.86923 5.97741 6.08191 6.15865 6.47277 6.50385 6.71093 6.72902 6.86629 6.95902 7.25649 7.45456 7.67816 7.70893 7.94395 8.06266 8.18273 8.43699 9.11983 9.73498 10.38738 11.32738 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.002167 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.229863 B =12920.378009 C =13868.272582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.073 0.927 4 O -0.333 6.333 5 C 0.042 3.958 6 C 0.512 3.488 7 O -0.510 6.510 8 N -0.715 5.715 9 C 0.146 3.854 10 H 0.101 0.899 11 C 0.129 3.871 12 N -0.599 5.599 13 C -0.230 4.230 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.919 5.919 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.150 3.850 22 C 0.067 3.933 23 H 0.062 0.938 24 O -0.564 6.564 25 C 0.202 3.798 26 N -0.456 5.456 27 C -0.028 4.028 28 C -0.057 4.057 29 N -0.459 5.459 30 C 0.068 3.932 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.030 0.970 38 H 0.035 0.965 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.377 0.623 43 H 0.172 0.828 44 H 0.176 0.824 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.052 11.825 22.885 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.116 3.884 3 H 0.090 0.910 4 O -0.250 6.250 5 C -0.038 4.038 6 C 0.296 3.704 7 O -0.383 6.383 8 N -0.368 5.368 9 C 0.041 3.959 10 H 0.119 0.881 11 C 0.002 3.998 12 N -0.327 5.327 13 C -0.358 4.358 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.024 3.976 22 C 0.006 3.994 23 H 0.080 0.920 24 O -0.369 6.369 25 C -0.061 4.061 26 N -0.174 5.174 27 C -0.177 4.177 28 C -0.189 4.189 29 N -0.143 5.143 30 C -0.075 4.075 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.224 0.776 43 H 0.189 0.811 44 H 0.193 0.807 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.064 9.914 22.784 27.621 hybrid contribution 1.327 1.781 -0.160 2.227 sum -10.737 11.696 22.624 27.639 Atomic orbital electron populations 1.22245 0.93576 1.04491 1.02254 1.20026 0.94068 0.93007 0.81271 0.90950 1.88242 1.86348 1.32431 1.17946 1.22333 1.01267 0.93105 0.87112 1.20052 0.78420 0.88510 0.83425 1.90778 1.50138 1.14819 1.82609 1.45848 1.68048 1.11832 1.11118 1.21980 0.95269 0.95896 0.82716 0.88062 1.21652 0.90028 0.99095 0.89033 1.44292 1.02566 1.85715 1.00127 1.19046 0.81251 1.43932 0.91569 0.90356 1.24850 0.97937 1.01482 0.96074 1.69933 1.31106 1.54415 1.01137 0.86087 0.83880 0.77806 0.77885 1.21474 1.21577 1.20564 1.22007 0.84003 0.99536 0.92007 1.23597 0.84249 0.97290 0.94218 0.92030 1.86440 1.33721 1.73973 1.42724 1.22803 1.03308 0.89234 0.90713 1.70306 1.18729 1.11791 1.16577 1.22434 1.04475 0.98302 0.92460 1.22721 1.09839 0.88224 0.98116 1.45263 1.46632 1.07663 1.14748 1.22093 1.03524 0.77770 1.04132 0.90266 0.91648 0.91237 0.90087 0.90350 0.76916 0.95233 0.94672 0.93576 0.90684 0.94139 0.77611 0.81125 0.80670 0.90243 0.89306 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.51 37.16 0.35 -1.03 16 2 C 0.18 1.77 2.99 -27.88 -0.08 1.69 16 3 H 0.07 0.47 6.71 -51.93 -0.35 0.12 16 4 O -0.33 -4.70 9.50 -55.14 -0.52 -5.22 16 5 C 0.04 0.47 6.23 36.01 0.22 0.69 16 6 C 0.51 8.21 7.90 -10.99 -0.09 8.12 16 7 O -0.51 -10.98 16.22 -14.35 -0.23 -11.21 16 8 N -0.72 -10.62 5.13 -52.04 -0.27 -10.89 16 9 C 0.15 2.78 2.97 -66.10 -0.20 2.58 16 10 H 0.10 2.19 7.69 -51.93 -0.40 1.79 16 11 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 12 N -0.60 -15.41 3.39 -170.07 -0.58 -15.98 16 13 C -0.23 -6.43 10.24 -15.06 -0.15 -6.58 16 14 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 15 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 16 N -0.92 -26.65 10.68 55.49 0.59 -26.06 16 17 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.15 3.55 5.16 -2.53 -0.01 3.54 16 22 C 0.07 1.22 4.04 -24.58 -0.10 1.12 16 23 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 24 O -0.56 -9.41 13.47 -35.23 -0.47 -9.89 16 25 C 0.20 2.42 6.79 -155.41 -1.05 1.36 16 26 N -0.46 -6.78 11.25 -10.81 -0.12 -6.90 16 27 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 28 C -0.06 -0.49 11.58 -16.56 -0.19 -0.69 16 29 N -0.46 -4.04 3.15 -121.28 -0.38 -4.42 16 30 C 0.07 0.27 10.76 59.84 0.64 0.91 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 34 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.40 4.40 8.52 -40.82 -0.35 4.05 16 37 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 41 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 42 H 0.38 4.67 9.12 45.56 0.42 5.09 16 43 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.20 7.31 -51.93 -0.38 -0.18 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -39.90 393.31 -8.49 -48.38 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.42 Total: 5.64 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -0.99 Total: 13.73 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.76 Total: -64.25 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.23 Total: -26.32 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.90 -8.49 -48.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198234465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.705 kcal (2) G-P(sol) polarization free energy of solvation -39.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds