Wall clock time and date at job start Tue Mar 31 2020 22:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47088 * 2 1 4 4 O 1.42895 * 109.47602 * 239.99838 * 2 1 3 5 5 C 1.42900 * 114.00229 * 89.99707 * 4 2 1 6 6 C 1.50702 * 109.47362 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99680 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99747 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99919 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.63768 * 36.69126 * 9 8 6 11 11 C 1.54318 * 110.72354 * 273.54876 * 9 8 6 12 12 N 1.47020 * 107.27541 * 219.44404 * 11 9 8 13 13 C 1.36938 * 125.65500 * 178.97533 * 12 11 9 14 14 H 1.08008 * 119.99569 * 349.94200 * 13 12 11 15 15 C 1.38807 * 120.00232 * 169.94054 * 13 12 11 16 16 N 1.31617 * 120.00226 * 350.42138 * 15 13 12 17 17 Si 1.86804 * 119.99833 * 170.42215 * 15 13 12 18 18 H 1.48499 * 109.47156 * 94.14124 * 17 15 13 19 19 H 1.48496 * 109.47191 * 214.14007 * 17 15 13 20 20 H 1.48507 * 109.47043 * 334.14045 * 17 15 13 21 21 C 1.47433 * 108.70070 * 358.93515 * 12 11 9 22 22 C 1.54905 * 104.82717 * 24.13379 * 21 12 11 23 23 H 1.08998 * 111.01101 * 81.06378 * 22 21 12 24 24 O 1.42911 * 111.00153 * 204.91308 * 22 21 12 25 25 C 1.50699 * 109.47046 * 119.99608 * 2 1 3 26 26 N 1.30501 * 125.65289 * 75.18169 * 25 2 1 27 27 C 1.34126 * 109.25863 * 180.28906 * 26 25 2 28 28 C 1.34673 * 108.01837 * 359.72868 * 27 26 25 29 29 N 1.35051 * 125.64833 * 255.00123 * 25 2 1 30 30 C 1.46488 * 126.39864 * 359.97438 * 29 25 2 31 31 H 1.09006 * 109.46672 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47315 * 300.00130 * 1 2 3 33 33 H 1.08997 * 109.46671 * 60.00538 * 1 2 3 34 34 H 1.09005 * 109.46912 * 300.00648 * 5 4 2 35 35 H 1.09005 * 109.46918 * 59.99892 * 5 4 2 36 36 H 0.97006 * 120.00533 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.88092 * 338.85693 * 11 9 8 38 38 H 1.09002 * 109.88708 * 100.02366 * 11 9 8 39 39 H 0.96999 * 119.99799 * 179.97438 * 16 15 13 40 40 H 1.09001 * 110.36177 * 142.96646 * 21 12 11 41 41 H 1.08994 * 110.36753 * 265.18072 * 21 12 11 42 42 H 0.96700 * 114.00061 * 292.19878 * 24 22 21 43 43 H 1.07996 * 125.98956 * 179.72099 * 27 26 25 44 44 H 1.08001 * 126.58740 * 180.02562 * 28 27 26 45 45 H 1.09001 * 109.47544 * 269.71446 * 30 29 25 46 46 H 1.09000 * 109.47443 * 149.71091 * 30 29 25 47 47 H 1.09006 * 109.47310 * 29.71512 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7005 -0.6285 -3.4613 7 8 2.8736 -1.8227 -3.3398 8 7 2.9555 -0.0270 -4.6401 9 6 3.4424 -0.8156 -5.7746 10 1 2.9737 -1.7996 -5.7879 11 6 4.9796 -0.9436 -5.7311 12 7 5.4669 -0.8251 -7.1131 13 6 6.7790 -0.8656 -7.5031 14 1 7.5639 -0.8303 -6.7620 15 6 7.1002 -0.9520 -8.8507 16 7 6.1567 -1.1842 -9.7386 17 14 8.8715 -0.7386 -9.4042 18 1 9.5211 -2.0698 -9.5092 19 1 8.8988 -0.0687 -10.7292 20 1 9.6028 0.0924 -8.4142 21 6 4.3089 -0.6564 -8.0098 22 6 3.1938 -0.0668 -7.1106 23 1 3.3205 1.0085 -6.9853 24 8 1.8993 -0.3702 -7.6347 25 6 2.0323 -0.7103 1.2305 26 7 2.0302 -2.0019 1.4174 27 6 2.5445 -2.2749 2.6256 28 6 2.8836 -1.1085 3.2073 29 7 2.5625 -0.1159 2.3212 30 6 2.7525 1.3228 2.5211 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.2538 0.6546 -2.5588 35 1 2.9320 0.9514 -2.0449 36 1 2.8174 0.9283 -4.7371 37 1 5.4009 -0.1454 -5.1198 38 1 5.2594 -1.9141 -5.3213 39 1 6.3812 -1.2442 -10.6803 40 1 4.5514 0.0355 -8.8164 41 1 4.0009 -1.6195 -8.4169 42 1 1.6986 0.0749 -8.4693 43 1 2.6654 -3.2578 3.0566 44 1 3.3248 -0.9810 4.1848 45 1 3.7375 1.6134 2.1560 46 1 2.6754 1.5553 3.5832 47 1 1.9857 1.8702 1.9729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198234465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:30 Heat of formation + Delta-G solvation = -56.612788 kcal Electronic energy + Delta-G solvation = -29195.183024 eV Core-core repulsion = 24993.536986 eV Total energy + Delta-G solvation = -4201.646038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04904 -41.12434 -39.65501 -38.68028 -36.69265 -35.58126 -34.95135 -33.72993 -33.22660 -30.60644 -29.62703 -29.32487 -28.09719 -27.79200 -26.18502 -24.49548 -22.66018 -22.33152 -21.98282 -21.48754 -20.78549 -19.13982 -18.64778 -18.36600 -17.83237 -17.69420 -17.15804 -17.03894 -16.64493 -16.40921 -15.91956 -15.64467 -15.38871 -15.24891 -14.92084 -14.74452 -14.51536 -14.28964 -14.03182 -13.95857 -13.74787 -13.67295 -13.44434 -13.23026 -13.21515 -13.07041 -12.94635 -12.80383 -12.75078 -12.09884 -12.03394 -11.91865 -11.53677 -11.13984 -10.92170 -10.80049 -10.77554 -10.73277 -10.54805 -10.19817 -9.38522 -8.96495 -7.93079 -5.30851 0.99064 1.45979 1.47677 1.56700 1.58198 1.59471 1.96260 2.18924 2.45910 2.97952 3.05856 3.26877 3.39545 3.58857 3.62548 3.82684 3.91539 3.96712 4.04681 4.07771 4.14424 4.17049 4.20799 4.34709 4.41361 4.43338 4.55347 4.58265 4.68207 4.70254 4.75787 4.83162 4.85134 4.93824 5.23456 5.30153 5.32600 5.41354 5.44200 5.60681 5.81415 6.00599 6.11355 6.26145 6.56681 6.87826 7.01149 7.20974 7.26006 7.65561 8.30612 9.18164 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.002167 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.229863 B =12920.378009 C =13868.272582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.173 3.827 3 H 0.116 0.884 4 O -0.381 6.381 5 C 0.049 3.951 6 C 0.505 3.495 7 O -0.577 6.577 8 N -0.696 5.696 9 C 0.158 3.842 10 H 0.068 0.932 11 C 0.131 3.869 12 N -0.618 5.618 13 C -0.251 4.251 14 H 0.079 0.921 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.982 3.018 18 H -0.290 1.290 19 H -0.287 1.287 20 H -0.266 1.266 21 C 0.155 3.845 22 C 0.096 3.904 23 H 0.100 0.900 24 O -0.567 6.567 25 C 0.180 3.820 26 N -0.521 5.521 27 C -0.071 4.071 28 C -0.038 4.038 29 N -0.454 5.454 30 C 0.056 3.944 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.421 0.579 37 H 0.047 0.953 38 H 0.004 0.996 39 H 0.252 0.748 40 H 0.056 0.944 41 H -0.001 1.001 42 H 0.398 0.602 43 H 0.176 0.824 44 H 0.215 0.785 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 16.051 24.575 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.114 3.886 3 H 0.134 0.866 4 O -0.299 6.299 5 C -0.030 4.030 6 C 0.292 3.708 7 O -0.455 6.455 8 N -0.351 5.351 9 C 0.051 3.949 10 H 0.086 0.914 11 C 0.004 3.996 12 N -0.345 5.345 13 C -0.379 4.379 14 H 0.097 0.903 15 C -0.253 4.253 16 N -0.594 5.594 17 Si 0.810 3.190 18 H -0.217 1.217 19 H -0.213 1.213 20 H -0.191 1.191 21 C 0.029 3.971 22 C 0.035 3.965 23 H 0.117 0.883 24 O -0.375 6.375 25 C -0.083 4.083 26 N -0.240 5.240 27 C -0.219 4.219 28 C -0.172 4.172 29 N -0.137 5.137 30 C -0.084 4.084 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.017 0.983 42 H 0.249 0.751 43 H 0.193 0.807 44 H 0.232 0.768 45 H 0.106 0.894 46 H 0.131 0.869 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.343 14.233 24.489 30.897 hybrid contribution 1.397 0.419 -0.629 1.588 sum -10.946 14.652 23.860 30.063 Atomic orbital electron populations 1.22215 0.92702 1.02785 1.04283 1.20366 0.94731 0.94347 0.79185 0.86626 1.88191 1.87000 1.34997 1.19674 1.22457 1.04194 0.91973 0.84361 1.21140 0.76886 0.88161 0.84564 1.90760 1.52954 1.18067 1.83714 1.45564 1.67104 1.12670 1.09749 1.21459 0.92831 0.95525 0.85053 0.91361 1.21693 0.92481 0.97918 0.87521 1.44574 1.02594 1.85603 1.01773 1.19403 0.82553 1.43968 0.92017 0.90301 1.25708 1.02111 1.01387 0.96066 1.70128 1.33002 1.55152 1.01117 0.85029 0.78977 0.77524 0.77517 1.21738 1.21289 1.19092 1.21857 0.85395 0.97356 0.92509 1.23205 0.82984 0.98475 0.91815 0.88260 1.86413 1.32150 1.74742 1.44196 1.23193 1.03892 0.88956 0.92215 1.70192 1.20890 1.14362 1.18590 1.22769 1.06487 1.00047 0.92587 1.23270 1.07615 0.87314 0.98954 1.45546 1.45058 1.09525 1.13580 1.22509 1.04754 0.74862 1.06285 0.93843 0.89567 0.89120 0.85829 0.86326 0.74032 0.93534 0.97812 0.93916 0.92580 0.98343 0.75118 0.80672 0.76834 0.89378 0.86933 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.51 71.98 0.68 -1.66 16 2 C 0.17 3.06 2.99 29.85 0.09 3.15 16 3 H 0.12 0.93 6.71 -2.39 -0.02 0.92 16 4 O -0.38 -10.28 9.50 -129.94 -1.23 -11.52 16 5 C 0.05 0.92 6.23 71.24 0.44 1.36 16 6 C 0.51 15.63 7.90 87.66 0.69 16.32 16 7 O -0.58 -25.75 16.22 16.03 0.26 -25.49 16 8 N -0.70 -19.21 5.13 -436.94 -2.24 -21.46 16 9 C 0.16 6.00 2.97 46.18 0.14 6.14 16 10 H 0.07 3.09 7.69 -2.39 -0.02 3.07 16 11 C 0.13 5.90 6.99 86.73 0.61 6.51 16 12 N -0.62 -32.50 3.39 -691.99 -2.35 -34.85 16 13 C -0.25 -14.27 10.24 84.03 0.86 -13.41 16 14 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 15 C -0.06 -3.34 5.40 84.86 0.46 -2.88 16 16 N -0.95 -56.21 10.68 21.65 0.23 -55.98 16 17 Si 0.98 45.36 29.56 68.60 2.03 47.39 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C 0.15 7.48 5.16 86.85 0.45 7.93 16 22 C 0.10 3.36 4.04 31.98 0.13 3.49 16 23 H 0.10 2.83 8.00 -2.39 -0.02 2.82 16 24 O -0.57 -17.97 13.47 -148.98 -2.01 -19.98 16 25 C 0.18 4.17 6.79 138.13 0.94 5.10 16 26 N -0.52 -16.18 11.25 -188.13 -2.12 -18.29 16 27 C -0.07 -1.70 11.87 83.52 0.99 -0.71 16 28 C -0.04 -0.60 11.58 83.09 0.96 0.36 16 29 N -0.45 -6.94 3.15 -537.62 -1.69 -8.63 16 30 C 0.06 0.21 10.76 127.77 1.37 1.59 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 34 H 0.12 1.28 7.87 -2.38 -0.02 1.26 16 35 H 0.12 1.29 8.09 -2.38 -0.02 1.27 16 36 H 0.42 7.55 8.52 -92.70 -0.79 6.76 16 37 H 0.05 1.94 8.03 -2.39 -0.02 1.92 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.06 2.89 6.94 -2.39 -0.02 2.88 16 41 H 0.00 -0.08 8.07 -2.39 -0.02 -0.10 16 42 H 0.40 8.97 9.12 -74.06 -0.68 8.29 16 43 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.22 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.11 -0.03 7.31 -2.38 -0.02 -0.05 16 Total: -1.00 -95.87 393.31 -0.77 -96.64 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.46 Total: 18.86 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 8.81 Total: 33.30 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -8.17 Total: -139.21 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -2.98 Total: -56.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -95.87 -0.77 -96.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198234465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.026 kcal (2) G-P(sol) polarization free energy of solvation -95.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds