Wall clock time and date at job start Tue Mar 31 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.27526 * 2 1 4 4 C 1.53996 * 110.30236 * 237.91133 * 2 1 3 5 5 N 1.47898 * 107.05690 * 242.30395 * 4 2 1 6 6 C 1.46898 * 111.00380 * 214.15932 * 5 4 2 7 7 C 1.50707 * 109.46961 * 300.99032 * 6 5 4 8 8 O 1.21288 * 120.00148 * 354.03537 * 7 6 5 9 9 N 1.34778 * 119.99480 * 174.03777 * 7 6 5 10 10 C 1.37100 * 119.99674 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99769 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99930 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00087 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46672 * 90.00612 * 14 12 10 16 16 H 1.48491 * 109.47212 * 210.00241 * 14 12 10 17 17 H 1.48494 * 109.47151 * 330.00694 * 14 12 10 18 18 C 1.48528 * 105.82467 * 334.68038 * 5 4 2 19 19 C 1.54590 * 110.30730 * 122.20038 * 2 1 3 20 20 H 1.08998 * 110.72672 * 22.51016 * 19 2 1 21 21 N 1.46504 * 110.72329 * 259.22763 * 19 2 1 22 22 C 1.34776 * 119.99995 * 160.04660 * 21 19 2 23 23 O 1.21277 * 120.00185 * 359.97438 * 22 21 19 24 24 C 1.50700 * 119.99485 * 180.02562 * 22 21 19 25 25 H 1.08992 * 110.44154 * 59.29790 * 24 22 21 26 26 C 1.54639 * 110.48370 * 181.83954 * 24 22 21 27 27 C 1.54688 * 101.66771 * 143.39034 * 26 24 22 28 28 N 1.46762 * 105.53525 * 334.74038 * 27 26 24 29 29 C 1.34417 * 111.30446 * 16.92467 * 28 27 26 30 30 O 1.21279 * 124.94646 * 179.62897 * 29 28 27 31 31 H 1.09003 * 109.47062 * 180.63301 * 1 2 3 32 32 H 1.08997 * 109.46929 * 300.63337 * 1 2 3 33 33 H 1.08997 * 109.47096 * 60.63197 * 1 2 3 34 34 H 1.09002 * 109.91222 * 122.95833 * 4 2 1 35 35 H 1.08993 * 109.92300 * 1.66590 * 4 2 1 36 36 H 1.08998 * 109.46963 * 60.98568 * 6 5 4 37 37 H 1.09000 * 109.47127 * 180.98964 * 6 5 4 38 38 H 0.96996 * 120.00559 * 359.97438 * 9 7 6 39 39 H 0.97007 * 119.99675 * 179.97438 * 13 12 10 40 40 H 1.09000 * 110.67172 * 157.63736 * 18 5 4 41 41 H 1.09007 * 110.66330 * 280.76762 * 18 5 4 42 42 H 0.97005 * 119.99469 * 340.04936 * 21 19 2 43 43 H 1.08998 * 110.96535 * 261.59361 * 26 24 22 44 44 H 1.09004 * 110.96379 * 25.35514 * 26 24 22 45 45 H 1.09003 * 110.29128 * 215.67986 * 27 26 24 46 46 H 1.09000 * 110.13664 * 93.71901 * 27 26 24 47 47 H 0.97006 * 124.34678 * 196.89579 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0644 -0.7673 -1.2236 5 7 2.8313 -1.9229 -0.7101 6 6 3.9750 -2.2248 -1.5811 7 6 3.4809 -2.5272 -2.9723 8 8 2.2901 -2.6011 -3.1903 9 7 4.3625 -2.7157 -3.9743 10 6 3.9130 -2.9914 -5.2399 11 1 2.8526 -3.0571 -5.4339 12 6 4.8217 -3.1851 -6.2730 13 7 6.1120 -3.1047 -6.0369 14 14 4.2094 -3.5614 -7.9972 15 1 4.0133 -2.2911 -8.7410 16 1 5.2092 -4.4004 -8.7055 17 1 2.9190 -4.2917 -7.9159 18 6 3.2854 -1.5355 0.6499 19 6 2.0666 -0.7726 1.2268 20 1 1.3172 -1.4698 1.6015 21 7 2.4867 0.1548 2.2803 22 6 2.6010 -0.2770 3.5519 23 8 2.3557 -1.4331 3.8242 24 6 3.0326 0.6771 4.6356 25 1 2.3375 1.5137 4.7052 26 6 3.1345 -0.0562 5.9932 27 6 4.3619 0.6360 6.6313 28 7 5.1599 1.1368 5.5060 29 6 4.4367 1.1758 4.3736 30 8 4.8498 1.5548 3.2982 31 1 -0.3633 -1.0276 0.0114 32 1 -0.3633 0.5236 0.8842 33 1 -0.3633 0.5040 -0.8956 34 1 2.7161 -0.1209 -1.8115 35 1 1.2326 -1.1159 -1.8357 36 1 4.6447 -1.3654 -1.6122 37 1 4.5113 -3.0894 -1.1899 38 1 5.3148 -2.6563 -3.8001 39 1 6.7464 -3.2403 -6.7581 40 1 3.5046 -2.4195 1.2488 41 1 4.1564 -0.8825 0.5931 42 1 2.6825 1.0796 2.0626 43 1 2.2381 0.1051 6.5919 44 1 3.3190 -1.1208 5.8486 45 1 4.9400 -0.0814 7.2139 46 1 4.0396 1.4637 7.2631 47 1 6.0897 1.4056 5.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208294965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:09 Heat of formation + Delta-G solvation = -97.921351 kcal Electronic energy + Delta-G solvation = -29617.909616 eV Core-core repulsion = 25414.472304 eV Total energy + Delta-G solvation = -4203.437312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29783 -39.79068 -38.71071 -37.57970 -36.78200 -34.53980 -33.76752 -32.67451 -31.94303 -31.16599 -29.20046 -28.18135 -26.88097 -25.35626 -24.08148 -22.72357 -22.06000 -21.05367 -20.67541 -19.79300 -19.06647 -17.94674 -17.79110 -17.69185 -16.73016 -16.51029 -15.82879 -15.40391 -15.24011 -14.83758 -14.49755 -14.48291 -14.25237 -14.09763 -13.86025 -13.69076 -13.48353 -13.38408 -13.19676 -13.04048 -12.74223 -12.32750 -12.21947 -11.96764 -11.70669 -11.66752 -11.46778 -11.32746 -11.12528 -10.87727 -10.76905 -10.52439 -10.42140 -10.36367 -10.18556 -10.10458 -9.65247 -9.45457 -9.17933 -8.38464 -7.95789 -7.87503 -6.37908 -3.78595 1.92307 2.33603 2.79296 3.00181 3.20317 3.28681 3.34951 3.75734 3.85817 3.95448 4.12589 4.28534 4.40098 4.43523 4.52723 4.69625 4.73525 4.81752 4.94919 5.00805 5.13522 5.28938 5.30800 5.40502 5.46036 5.51890 5.58259 5.75515 5.82819 5.89306 5.94316 6.01080 6.03956 6.15826 6.19915 6.24158 6.33053 6.42079 6.44413 6.59423 7.24420 7.26872 7.32733 7.58697 7.69078 7.96929 8.10038 8.65871 9.21816 9.58564 10.10394 10.79955 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002202 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.171966 B =12715.509611 C =13440.114727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.051 3.949 5 N -0.489 5.489 6 C 0.037 3.963 7 C 0.444 3.556 8 O -0.578 6.578 9 N -0.565 5.565 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.024 3.976 19 C 0.147 3.853 20 H 0.106 0.894 21 N -0.707 5.707 22 C 0.531 3.469 23 O -0.530 6.530 24 C -0.152 4.152 25 H 0.135 0.865 26 C -0.118 4.118 27 C 0.098 3.902 28 N -0.728 5.728 29 C 0.529 3.471 30 O -0.517 6.517 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.405 0.595 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 11.616 27.110 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.095 0.905 4 C -0.077 4.077 5 N -0.213 5.213 6 C -0.095 4.095 7 C 0.230 3.770 8 O -0.462 6.462 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.181 4.181 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.105 4.105 19 C 0.042 3.958 20 H 0.124 0.876 21 N -0.358 5.358 22 C 0.315 3.685 23 O -0.406 6.406 24 C -0.177 4.177 25 H 0.153 0.847 26 C -0.156 4.156 27 C -0.026 4.026 28 N -0.384 5.384 29 C 0.313 3.687 30 O -0.392 6.392 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.241 0.759 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.626 10.386 26.422 28.765 hybrid contribution 1.641 1.231 -0.824 2.210 sum -2.985 11.617 25.599 28.270 Atomic orbital electron populations 1.21804 0.93720 1.02667 1.01419 1.22333 0.97150 0.99087 0.94423 0.90533 1.22947 0.99467 0.90205 0.95041 1.64523 1.19974 1.36246 1.00596 1.22100 0.92463 1.01250 0.93683 1.19705 0.87170 0.84605 0.85566 1.90499 1.15871 1.56224 1.83586 1.41866 1.08445 1.62078 1.07787 1.19694 0.94605 1.44650 0.83728 0.87912 1.25266 0.94945 0.97568 1.00273 1.69622 1.00788 1.50115 1.33868 0.85856 0.78483 0.78392 0.81546 1.20469 1.20955 1.19406 1.23623 0.96238 0.99388 0.91300 1.22006 0.96539 0.91014 0.86284 0.87643 1.46008 1.68225 1.14504 1.07077 1.19707 0.77524 0.88114 0.83140 1.90733 1.49760 1.18014 1.82094 1.22190 0.97522 1.00919 0.97055 0.84699 1.22665 0.98467 1.01836 0.92622 1.22212 0.92662 0.98781 0.88945 1.46116 1.15042 1.67183 1.10090 1.20323 0.87224 0.77244 0.83911 1.90819 1.75586 1.47432 1.25378 0.91678 0.93047 0.92123 0.93982 0.87935 0.93427 0.89111 0.77494 0.91917 0.89725 0.93509 0.75881 0.88410 0.87884 0.89635 0.90602 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.89 37.16 0.33 -1.24 16 2 C -0.11 -1.41 3.32 -89.26 -0.30 -1.70 16 3 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 4 C 0.05 0.87 5.05 -2.75 -0.01 0.86 16 5 N -0.49 -8.83 5.12 -231.89 -1.19 -10.01 16 6 C 0.04 0.71 5.30 -4.97 -0.03 0.69 16 7 C 0.44 10.84 7.39 -10.98 -0.08 10.76 16 8 O -0.58 -15.81 14.10 5.55 0.08 -15.73 16 9 N -0.56 -14.74 5.29 -10.96 -0.06 -14.80 16 10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -25.08 13.05 55.50 0.72 -24.35 16 14 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 C 0.02 0.36 6.24 -1.90 -0.01 0.35 16 19 C 0.15 1.92 2.89 -66.07 -0.19 1.73 16 20 H 0.11 1.51 7.42 -51.93 -0.39 1.13 16 21 N -0.71 -7.77 4.91 -52.01 -0.26 -8.03 16 22 C 0.53 5.86 7.14 -10.99 -0.08 5.78 16 23 O -0.53 -7.50 15.23 5.56 0.08 -7.42 16 24 C -0.15 -1.10 3.32 -91.77 -0.30 -1.40 16 25 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 26 C -0.12 -0.59 6.48 -24.98 -0.16 -0.75 16 27 C 0.10 0.31 7.79 -3.01 -0.02 0.29 16 28 N -0.73 -4.21 6.24 -59.09 -0.37 -4.58 16 29 C 0.53 4.75 7.85 -10.86 -0.09 4.67 16 30 O -0.52 -6.62 16.99 5.56 0.09 -6.53 16 31 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.75 7.71 -51.93 -0.40 0.35 16 35 H 0.10 2.00 6.57 -51.93 -0.34 1.65 16 36 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.72 7.95 -51.93 -0.41 0.30 16 42 H 0.41 3.96 7.69 -40.82 -0.31 3.64 16 43 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.74 7.03 -51.93 -0.36 0.37 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.41 1.88 8.96 -40.82 -0.37 1.51 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -35.58 384.33 -8.34 -43.92 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -7.04 Total: 13.42 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -1.18 Total: 11.92 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.14 Total: -61.78 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: 0.26 Total: -29.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.58 -8.34 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208294965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.998 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds