Wall clock time and date at job start Tue Mar 31 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.27526 * 2 1 4 4 C 1.53996 * 110.30236 * 237.91133 * 2 1 3 5 5 N 1.47898 * 107.05690 * 242.30395 * 4 2 1 6 6 C 1.46898 * 111.00380 * 214.15932 * 5 4 2 7 7 C 1.50707 * 109.46961 * 300.99032 * 6 5 4 8 8 O 1.21288 * 120.00148 * 354.03537 * 7 6 5 9 9 N 1.34778 * 119.99480 * 174.03777 * 7 6 5 10 10 C 1.37100 * 119.99674 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99769 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99930 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00087 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46672 * 90.00612 * 14 12 10 16 16 H 1.48491 * 109.47212 * 210.00241 * 14 12 10 17 17 H 1.48494 * 109.47151 * 330.00694 * 14 12 10 18 18 C 1.48528 * 105.82467 * 334.68038 * 5 4 2 19 19 C 1.54590 * 110.30730 * 122.20038 * 2 1 3 20 20 H 1.08998 * 110.72672 * 22.51016 * 19 2 1 21 21 N 1.46504 * 110.72329 * 259.22763 * 19 2 1 22 22 C 1.34776 * 119.99995 * 160.04660 * 21 19 2 23 23 O 1.21277 * 120.00185 * 359.97438 * 22 21 19 24 24 C 1.50700 * 119.99485 * 180.02562 * 22 21 19 25 25 H 1.08992 * 110.44154 * 59.29790 * 24 22 21 26 26 C 1.54639 * 110.48370 * 181.83954 * 24 22 21 27 27 C 1.54688 * 101.66771 * 143.39034 * 26 24 22 28 28 N 1.46762 * 105.53525 * 334.74038 * 27 26 24 29 29 C 1.34417 * 111.30446 * 16.92467 * 28 27 26 30 30 O 1.21279 * 124.94646 * 179.62897 * 29 28 27 31 31 H 1.09003 * 109.47062 * 180.63301 * 1 2 3 32 32 H 1.08997 * 109.46929 * 300.63337 * 1 2 3 33 33 H 1.08997 * 109.47096 * 60.63197 * 1 2 3 34 34 H 1.09002 * 109.91222 * 122.95833 * 4 2 1 35 35 H 1.08993 * 109.92300 * 1.66590 * 4 2 1 36 36 H 1.08998 * 109.46963 * 60.98568 * 6 5 4 37 37 H 1.09000 * 109.47127 * 180.98964 * 6 5 4 38 38 H 0.96996 * 120.00559 * 359.97438 * 9 7 6 39 39 H 0.97007 * 119.99675 * 179.97438 * 13 12 10 40 40 H 1.09000 * 110.67172 * 157.63736 * 18 5 4 41 41 H 1.09007 * 110.66330 * 280.76762 * 18 5 4 42 42 H 0.97005 * 119.99469 * 340.04936 * 21 19 2 43 43 H 1.08998 * 110.96535 * 261.59361 * 26 24 22 44 44 H 1.09004 * 110.96379 * 25.35514 * 26 24 22 45 45 H 1.09003 * 110.29128 * 215.67986 * 27 26 24 46 46 H 1.09000 * 110.13664 * 93.71901 * 27 26 24 47 47 H 0.97006 * 124.34678 * 196.89579 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0644 -0.7673 -1.2236 5 7 2.8313 -1.9229 -0.7101 6 6 3.9750 -2.2248 -1.5811 7 6 3.4809 -2.5272 -2.9723 8 8 2.2901 -2.6011 -3.1903 9 7 4.3625 -2.7157 -3.9743 10 6 3.9130 -2.9914 -5.2399 11 1 2.8526 -3.0571 -5.4339 12 6 4.8217 -3.1851 -6.2730 13 7 6.1120 -3.1047 -6.0369 14 14 4.2094 -3.5614 -7.9972 15 1 4.0133 -2.2911 -8.7410 16 1 5.2092 -4.4004 -8.7055 17 1 2.9190 -4.2917 -7.9159 18 6 3.2854 -1.5355 0.6499 19 6 2.0666 -0.7726 1.2268 20 1 1.3172 -1.4698 1.6015 21 7 2.4867 0.1548 2.2803 22 6 2.6010 -0.2770 3.5519 23 8 2.3557 -1.4331 3.8242 24 6 3.0326 0.6771 4.6356 25 1 2.3375 1.5137 4.7052 26 6 3.1345 -0.0562 5.9932 27 6 4.3619 0.6360 6.6313 28 7 5.1599 1.1368 5.5060 29 6 4.4367 1.1758 4.3736 30 8 4.8498 1.5548 3.2982 31 1 -0.3633 -1.0276 0.0114 32 1 -0.3633 0.5236 0.8842 33 1 -0.3633 0.5040 -0.8956 34 1 2.7161 -0.1209 -1.8115 35 1 1.2326 -1.1159 -1.8357 36 1 4.6447 -1.3654 -1.6122 37 1 4.5113 -3.0894 -1.1899 38 1 5.3148 -2.6563 -3.8001 39 1 6.7464 -3.2403 -6.7581 40 1 3.5046 -2.4195 1.2488 41 1 4.1564 -0.8825 0.5931 42 1 2.6825 1.0796 2.0626 43 1 2.2381 0.1051 6.5919 44 1 3.3190 -1.1208 5.8486 45 1 4.9400 -0.0814 7.2139 46 1 4.0396 1.4637 7.2631 47 1 6.0897 1.4056 5.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208294965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:09 Heat of formation + Delta-G solvation = -128.782917 kcal Electronic energy + Delta-G solvation = -29619.247874 eV Core-core repulsion = 25414.472304 eV Total energy + Delta-G solvation = -4204.775570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00212 -40.97512 -40.03081 -39.08978 -37.41823 -36.09956 -35.44483 -33.82768 -33.24269 -32.53348 -30.32336 -29.02992 -28.14675 -26.93788 -25.58550 -23.53316 -22.62220 -22.22273 -21.78060 -21.00948 -20.60504 -19.87883 -18.56690 -18.33289 -17.72474 -17.65844 -17.34120 -16.69964 -16.54464 -16.23323 -15.75987 -15.66890 -15.47481 -15.12806 -14.88656 -14.78359 -14.73578 -14.65791 -14.14249 -13.97282 -13.69469 -13.65202 -13.51033 -13.37406 -13.00517 -12.95254 -12.71922 -12.49071 -12.43721 -12.23917 -12.12779 -12.09028 -11.90868 -11.67978 -11.50042 -11.16466 -10.96085 -10.37573 -10.14567 -10.09090 -10.03655 -9.41654 -8.48209 -5.97294 1.21390 1.36628 1.40245 1.53667 1.56784 2.00379 2.01697 2.27684 2.44427 2.83827 3.17658 3.22956 3.26868 3.34011 3.52095 3.59745 3.83889 3.86353 4.03837 4.15419 4.19092 4.22940 4.30748 4.36407 4.45984 4.49149 4.51908 4.60897 4.78175 4.80543 4.86436 4.94798 5.02738 5.04642 5.14327 5.20037 5.31912 5.39160 5.42552 5.75294 5.77574 5.89880 5.93657 6.02714 6.44043 6.57551 7.09334 7.10157 7.15545 7.52327 8.07557 8.69429 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002202 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.171966 B =12715.509611 C =13440.114727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.098 0.902 4 C 0.052 3.948 5 N -0.507 5.507 6 C 0.048 3.952 7 C 0.442 3.558 8 O -0.611 6.611 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.081 0.919 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 0.995 3.005 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.029 3.971 19 C 0.157 3.843 20 H 0.094 0.906 21 N -0.701 5.701 22 C 0.527 3.473 23 O -0.565 6.565 24 C -0.145 4.145 25 H 0.168 0.832 26 C -0.116 4.116 27 C 0.100 3.900 28 N -0.719 5.719 29 C 0.519 3.481 30 O -0.565 6.565 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.395 0.605 39 H 0.278 0.722 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.414 0.586 43 H 0.124 0.876 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 13.030 29.116 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 H 0.116 0.884 4 C -0.076 4.076 5 N -0.232 5.232 6 C -0.084 4.084 7 C 0.230 3.770 8 O -0.497 6.497 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.099 0.901 12 C -0.215 4.215 13 N -0.563 5.563 14 Si 0.819 3.181 15 H -0.195 1.195 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.100 4.100 19 C 0.051 3.949 20 H 0.112 0.888 21 N -0.352 5.352 22 C 0.313 3.687 23 O -0.443 6.443 24 C -0.169 4.169 25 H 0.185 0.815 26 C -0.154 4.154 27 C -0.023 4.023 28 N -0.374 5.374 29 C 0.304 3.696 30 O -0.444 6.444 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.251 0.749 43 H 0.142 0.858 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.563 11.821 28.497 31.187 hybrid contribution 1.650 0.763 -1.360 2.270 sum -2.913 12.584 27.138 30.055 Atomic orbital electron populations 1.21768 0.92450 1.02173 1.02770 1.22248 0.98099 0.99315 0.92003 0.88372 1.22856 0.98176 0.90004 0.96558 1.64449 1.19793 1.37351 1.01580 1.21969 0.93107 1.02561 0.90735 1.20555 0.86571 0.82869 0.87049 1.90476 1.17395 1.57246 1.84560 1.41931 1.08761 1.62659 1.07729 1.19674 0.93996 1.47027 0.85391 0.90135 1.26093 0.95028 0.96613 1.03739 1.69688 1.01537 1.49810 1.35254 0.84893 0.77971 0.78532 0.76724 1.19509 1.19528 1.19705 1.23596 0.97332 0.99473 0.89606 1.21718 0.95135 0.91118 0.86894 0.88781 1.45937 1.67992 1.14469 1.06796 1.20377 0.76490 0.88271 0.83594 1.90722 1.51222 1.19740 1.82658 1.22253 0.97103 1.01133 0.96409 0.81515 1.22727 1.00565 1.00269 0.91798 1.22453 0.91693 1.00052 0.88126 1.46213 1.15404 1.65761 1.10050 1.20636 0.88054 0.76965 0.83925 1.90790 1.76565 1.49836 1.27208 0.93167 0.90547 0.91824 0.95183 0.90965 0.91716 0.87618 0.77138 0.91288 0.90397 0.93246 0.74870 0.85755 0.90332 0.88015 0.87574 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.89 71.98 0.64 -2.29 16 2 C -0.10 -2.42 3.32 -9.91 -0.03 -2.45 16 3 H 0.10 2.05 7.72 -2.39 -0.02 2.03 16 4 C 0.05 1.82 5.05 86.45 0.44 2.26 16 5 N -0.51 -18.64 5.12 -887.58 -4.54 -23.18 16 6 C 0.05 1.87 5.30 85.56 0.45 2.33 16 7 C 0.44 22.29 7.39 87.66 0.65 22.94 16 8 O -0.61 -34.84 14.10 -3.05 -0.04 -34.88 16 9 N -0.57 -30.80 5.29 -306.98 -1.62 -32.42 16 10 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 11 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 12 C -0.02 -0.83 5.50 84.92 0.47 -0.37 16 13 N -0.92 -51.18 13.05 21.66 0.28 -50.90 16 14 Si 1.00 43.94 29.55 68.60 2.03 45.96 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.03 0.88 6.24 86.65 0.54 1.42 16 19 C 0.16 4.04 2.89 46.19 0.13 4.18 16 20 H 0.09 2.69 7.42 -2.39 -0.02 2.67 16 21 N -0.70 -14.57 4.91 -436.85 -2.15 -16.71 16 22 C 0.53 10.99 7.14 87.66 0.63 11.62 16 23 O -0.56 -15.76 15.23 -3.02 -0.05 -15.81 16 24 C -0.14 -1.75 3.32 -11.54 -0.04 -1.79 16 25 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 26 C -0.12 -0.84 6.48 31.73 0.21 -0.64 16 27 C 0.10 0.29 7.79 86.90 0.68 0.96 16 28 N -0.72 -6.65 6.24 -459.45 -2.87 -9.52 16 29 C 0.52 8.48 7.85 87.90 0.69 9.17 16 30 O -0.56 -14.07 16.99 -3.03 -0.05 -14.12 16 31 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 1.09 7.71 -2.39 -0.02 1.08 16 35 H 0.07 2.95 6.57 -2.39 -0.02 2.94 16 36 H 0.06 2.32 8.00 -2.39 -0.02 2.30 16 37 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 38 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 39 H 0.28 14.40 8.31 -92.70 -0.77 13.62 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 1.49 7.95 -2.38 -0.02 1.47 16 42 H 0.41 7.39 7.69 -92.70 -0.71 6.68 16 43 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.08 1.02 7.03 -2.38 -0.02 1.00 16 45 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 46 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.42 2.98 8.96 -92.70 -0.83 2.15 16 Total: -1.00 -80.01 384.33 -4.00 -84.01 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.25 Total: 38.76 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 6.26 Total: 28.81 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -10.90 Total: -132.73 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -0.14 Total: -64.81 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -80.01 -4.00 -84.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208294965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.772 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds