Wall clock time and date at job start Tue Mar 31 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.91629 * 2 1 4 4 C 1.54918 * 111.00442 * 236.10021 * 2 1 3 5 5 N 1.47421 * 104.82978 * 204.91719 * 4 2 1 6 6 C 1.34785 * 125.64496 * 204.16182 * 5 4 2 7 7 O 1.21277 * 119.99736 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99855 * 359.96417 * 6 5 4 9 9 H 1.09000 * 110.21705 * 320.47166 * 8 6 5 10 10 C 1.54476 * 110.24928 * 82.49782 * 8 6 5 11 11 C 1.54623 * 101.76907 * 144.41387 * 10 8 6 12 12 C 1.51280 * 104.19273 * 335.20336 * 11 10 8 13 13 O 1.21283 * 124.93724 * 196.23455 * 12 11 10 14 14 N 1.34418 * 110.11907 * 16.25197 * 12 11 10 15 15 C 1.47019 * 108.70549 * 24.12893 * 5 4 2 16 16 C 1.54322 * 107.27126 * 358.94192 * 15 5 4 17 17 H 1.09000 * 110.72351 * 96.34585 * 16 15 5 18 18 N 1.46906 * 110.71838 * 219.44664 * 16 15 5 19 19 C 1.46899 * 110.99568 * 273.54399 * 18 16 15 20 20 C 1.50696 * 109.47430 * 180.02562 * 19 18 16 21 21 O 1.21294 * 119.99744 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00492 * 179.97438 * 20 19 18 23 23 C 1.37105 * 119.99881 * 179.97438 * 22 20 19 24 24 H 1.07990 * 120.00138 * 0.02562 * 23 22 20 25 25 C 1.38948 * 119.99462 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00455 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99697 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46845 * 60.00774 * 27 25 23 29 29 H 1.48503 * 109.47399 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47295 * 300.00870 * 27 25 23 31 31 H 1.08998 * 109.47136 * 296.09967 * 1 2 3 32 32 H 1.09001 * 109.46759 * 56.09467 * 1 2 3 33 33 H 1.08998 * 109.46901 * 176.09081 * 1 2 3 34 34 H 1.08999 * 110.36441 * 86.07550 * 4 2 1 35 35 H 1.09003 * 110.45981 * 323.80608 * 4 2 1 36 36 H 1.09008 * 110.96934 * 262.53541 * 10 8 6 37 37 H 1.09002 * 110.96813 * 26.29259 * 10 8 6 38 38 H 1.09000 * 110.49079 * 216.52543 * 11 10 8 39 39 H 1.09002 * 110.60128 * 93.93383 * 11 10 8 40 40 H 0.96998 * 124.35442 * 180.39177 * 14 12 11 41 41 H 1.08995 * 109.88159 * 239.52165 * 15 5 4 42 42 H 1.09008 * 109.88069 * 118.35874 * 15 5 4 43 43 H 1.00892 * 111.00013 * 37.49282 * 18 16 15 44 44 H 1.09001 * 109.47354 * 59.99882 * 19 18 16 45 45 H 1.09000 * 109.47162 * 299.99864 * 19 18 16 46 46 H 0.96992 * 120.00055 * 359.97438 * 22 20 19 47 47 H 0.97001 * 120.00078 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4481 -1.5603 -1.5941 7 8 5.5134 -1.9079 -1.1303 8 6 4.2658 -1.4832 -3.0881 9 1 3.2762 -1.8461 -3.3660 10 6 4.4611 -0.0308 -3.5763 11 6 5.1448 -0.2478 -4.9461 12 6 5.8107 -1.6001 -4.8182 13 8 6.6760 -2.0208 -5.5566 14 7 5.3036 -2.2676 -3.7675 15 6 3.4674 -1.2742 0.6959 16 6 2.0861 -0.8080 1.2021 17 1 1.4478 -1.6633 1.4238 18 7 2.2290 0.0518 2.3847 19 6 2.2896 -0.7499 3.6141 20 6 2.4352 0.1643 4.8033 21 8 2.4842 1.3655 4.6424 22 7 2.5110 -0.3528 6.0456 23 6 2.6440 0.4790 7.1274 24 1 2.6877 1.5484 6.9841 25 6 2.7216 -0.0542 8.4081 26 7 2.6680 -1.3555 8.5826 27 14 2.9036 1.0790 9.8820 28 1 1.7392 1.9984 9.9461 29 1 2.9640 0.2687 11.1250 30 1 4.1526 1.8707 9.7465 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5733 -0.8529 33 1 -0.3633 -1.0253 -0.0701 34 1 2.1560 -0.1719 -2.0837 35 1 1.4524 -1.6703 -1.4045 36 1 3.5019 0.4734 -3.6946 37 1 5.1109 0.5242 -2.8996 38 1 5.8885 0.5280 -5.1285 39 1 4.4048 -0.2611 -5.7463 40 1 5.5870 -3.1539 -3.4936 41 1 4.2425 -0.5999 1.0598 42 1 3.6650 -2.2895 1.0399 43 1 3.0382 0.6487 2.3020 44 1 3.1449 -1.4239 3.5667 45 1 1.3734 -1.3319 3.7139 46 1 2.4715 -1.3133 6.1743 47 1 2.5739 -1.9440 7.8172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214322418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:31 Heat of formation + Delta-G solvation = -130.447143 kcal Electronic energy + Delta-G solvation = -29121.530040 eV Core-core repulsion = 24916.682304 eV Total energy + Delta-G solvation = -4204.847736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01867 -40.83207 -40.24478 -39.11487 -37.29062 -36.56076 -35.71317 -33.56225 -33.10786 -32.33122 -30.81912 -29.10815 -27.44448 -27.24448 -25.77077 -23.92338 -22.89585 -21.76662 -21.62794 -21.22792 -20.67268 -19.98569 -18.73796 -18.42118 -18.12074 -17.55415 -16.92107 -16.82159 -16.61344 -16.43404 -15.84927 -15.67356 -15.51486 -15.44484 -14.93467 -14.76707 -14.59725 -14.35704 -14.17170 -14.04011 -13.75504 -13.46450 -13.41664 -13.34851 -13.28803 -13.03724 -12.81068 -12.75449 -12.18671 -12.08243 -11.92731 -11.91641 -11.87054 -11.61866 -11.53139 -11.28439 -11.05709 -10.42332 -10.26992 -10.12326 -9.83942 -9.44427 -8.93514 -6.07745 1.32384 1.38525 1.51764 1.54164 1.71409 1.82080 1.99471 2.33467 2.39893 2.76462 3.13154 3.15663 3.26527 3.34733 3.51360 3.52153 3.70187 3.94900 3.95488 4.02152 4.10391 4.12674 4.32088 4.33021 4.43978 4.44573 4.54300 4.64603 4.71392 4.78058 4.80668 4.90711 4.96412 4.99273 5.10144 5.18228 5.36649 5.55733 5.59147 5.61214 5.86871 5.90525 5.96602 6.21035 6.35247 6.56344 6.73086 6.90436 7.09329 7.43097 7.90821 8.54118 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.001953 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.438487 B =14331.991308 C =14970.048125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 H 0.083 0.917 4 C 0.096 3.904 5 N -0.605 5.605 6 C 0.513 3.487 7 O -0.586 6.586 8 C 0.123 3.877 9 H 0.150 0.850 10 C -0.115 4.115 11 C -0.143 4.143 12 C 0.510 3.490 13 O -0.587 6.587 14 N -0.715 5.715 15 C 0.078 3.922 16 C 0.084 3.916 17 H 0.110 0.890 18 N -0.659 5.659 19 C 0.063 3.937 20 C 0.441 3.559 21 O -0.617 6.617 22 N -0.587 5.587 23 C -0.410 4.410 24 H 0.074 0.926 25 C -0.043 4.043 26 N -0.917 5.917 27 Si 1.133 2.867 28 H -0.271 1.271 29 H -0.273 1.273 30 H -0.274 1.274 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.409 0.591 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.344 0.656 44 H 0.062 0.938 45 H 0.112 0.888 46 H 0.384 0.616 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -0.919 -27.492 28.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.025 4.025 5 N -0.338 5.338 6 C 0.301 3.699 7 O -0.466 6.466 8 C 0.014 3.986 9 H 0.167 0.833 10 C -0.153 4.153 11 C -0.183 4.183 12 C 0.298 3.702 13 O -0.467 6.467 14 N -0.368 5.368 15 C -0.048 4.048 16 C -0.027 4.027 17 H 0.128 0.872 18 N -0.290 5.290 19 C -0.069 4.069 20 C 0.229 3.771 21 O -0.503 6.503 22 N -0.226 5.226 23 C -0.539 4.539 24 H 0.092 0.908 25 C -0.242 4.242 26 N -0.556 5.556 27 Si 0.953 3.047 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.199 1.199 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.167 0.833 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.161 0.839 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.164 0.836 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.219 0.781 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.417 -0.262 -26.085 26.864 hybrid contribution 1.500 -1.612 -0.791 2.340 sum -4.917 -1.874 -26.876 27.386 Atomic orbital electron populations 1.21606 0.92041 1.02873 1.02460 1.22327 0.97561 0.99132 0.91574 0.89909 1.22935 0.80815 1.00061 0.98655 1.48424 1.13538 1.65836 1.05980 1.21098 0.82359 0.76587 0.89820 1.90760 1.28067 1.49404 1.78322 1.21880 0.94563 0.95560 0.86578 0.83275 1.22757 1.05234 0.92052 0.95226 1.22427 1.02490 0.93222 1.00124 1.21711 0.80493 0.88858 0.79095 1.90744 1.33447 1.74609 1.47918 1.46184 1.40214 1.20282 1.30151 1.22797 0.99446 1.01222 0.81320 1.22928 0.93562 0.96076 0.90123 0.87198 1.60244 1.48123 1.20728 0.99906 1.21616 1.03188 0.94021 0.88112 1.20875 0.81973 0.89528 0.84741 1.90504 1.56250 1.17533 1.85973 1.42005 1.65848 1.08877 1.05890 1.20512 1.53115 0.92538 0.87721 0.90824 1.27821 0.94411 0.99460 1.02472 1.70974 1.47793 1.03190 1.33643 0.82635 0.77828 0.72696 0.71552 1.19651 1.19820 1.19945 0.93666 0.90321 0.91286 0.86385 0.88033 0.83345 0.90906 0.87081 0.83879 0.75241 0.93508 0.92172 0.83629 0.91979 0.86996 0.78147 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.31 71.98 0.67 -0.60 16 2 C -0.09 -0.98 3.33 -9.40 -0.03 -1.01 16 3 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.10 0.54 5.87 86.86 0.51 1.05 16 5 N -0.60 -8.71 3.33 -811.79 -2.70 -11.41 16 6 C 0.51 9.19 7.03 87.66 0.62 9.81 16 7 O -0.59 -17.32 16.91 -3.02 -0.05 -17.37 16 8 C 0.12 1.11 3.13 44.70 0.14 1.25 16 9 H 0.15 0.14 7.70 -2.39 -0.02 0.13 16 10 C -0.11 -0.53 6.33 31.65 0.20 -0.33 16 11 C -0.14 -1.02 6.86 30.58 0.21 -0.81 16 12 C 0.51 9.38 8.43 87.90 0.74 10.12 16 13 O -0.59 -16.90 18.03 -3.04 -0.05 -16.95 16 14 N -0.71 -11.24 5.47 -442.98 -2.42 -13.66 16 15 C 0.08 1.54 6.52 86.73 0.57 2.10 16 16 C 0.08 1.47 2.71 46.10 0.12 1.59 16 17 H 0.11 1.67 7.80 -2.39 -0.02 1.65 16 18 N -0.66 -17.76 5.98 -489.45 -2.93 -20.69 16 19 C 0.06 1.95 6.02 85.56 0.52 2.46 16 20 C 0.44 20.20 7.82 87.66 0.69 20.88 16 21 O -0.62 -33.34 15.78 -3.07 -0.05 -33.39 16 22 N -0.59 -29.30 5.28 -306.99 -1.62 -30.92 16 23 C -0.41 -23.21 9.68 84.04 0.81 -22.40 16 24 H 0.07 4.48 7.16 -2.92 -0.02 4.46 16 25 C -0.04 -2.35 5.50 84.93 0.47 -1.88 16 26 N -0.92 -50.94 13.68 21.66 0.30 -50.64 16 27 Si 1.13 48.29 29.92 68.60 2.05 50.34 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 30 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.07 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.12 -0.14 6.73 -2.39 -0.02 -0.15 16 35 H 0.10 0.18 7.99 -2.39 -0.02 0.16 16 36 H 0.15 -0.62 7.51 -2.38 -0.02 -0.63 16 37 H 0.07 0.65 7.91 -2.39 -0.02 0.63 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.41 7.20 8.96 -92.71 -0.83 6.37 16 41 H 0.05 1.17 7.57 -2.39 -0.02 1.15 16 42 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.34 10.39 7.86 -89.70 -0.70 9.69 16 44 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 45 H 0.11 2.98 8.08 -2.39 -0.02 2.96 16 46 H 0.38 17.59 6.73 -92.71 -0.62 16.96 16 47 H 0.26 13.89 6.78 -92.71 -0.63 13.26 16 Total: -1.00 -88.29 388.05 -2.24 -90.52 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.99 Total: 31.93 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.23 Total: 22.24 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -9.38 Total: -127.33 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: -0.15 Total: -67.71 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.05 Total: 50.34 kcal Total: -88.29 -2.24 -90.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214322418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.923 kcal (2) G-P(sol) polarization free energy of solvation -88.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds