Wall clock time and date at job start Tue Mar 31 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.90901 * 2 1 4 4 C 1.54909 * 111.00494 * 236.10223 * 2 1 3 5 5 N 1.47425 * 104.82871 * 204.91323 * 4 2 1 6 6 C 1.34783 * 125.64604 * 204.15926 * 5 4 2 7 7 O 1.21276 * 120.00032 * 354.94554 * 6 5 4 8 8 C 1.50693 * 119.99554 * 174.94247 * 6 5 4 9 9 H 1.08999 * 110.44034 * 337.13021 * 8 6 5 10 10 C 1.54632 * 110.48386 * 214.58564 * 8 6 5 11 11 C 1.54478 * 101.76661 * 216.52713 * 10 8 6 12 12 N 1.46761 * 105.47519 * 25.41392 * 11 10 8 13 13 C 1.34417 * 111.29922 * 342.98657 * 12 11 10 14 14 O 1.21281 * 124.94362 * 180.43573 * 13 12 11 15 15 C 1.47022 * 108.70541 * 24.13120 * 5 4 2 16 16 C 1.54325 * 107.27064 * 358.93684 * 15 5 4 17 17 H 1.08996 * 110.71992 * 96.34904 * 16 15 5 18 18 N 1.46903 * 110.72163 * 219.44853 * 16 15 5 19 19 C 1.46900 * 110.99626 * 273.54867 * 18 16 15 20 20 C 1.50702 * 109.46733 * 179.97438 * 19 18 16 21 21 O 1.21289 * 120.00224 * 359.97438 * 20 19 18 22 22 N 1.34779 * 119.99473 * 179.97438 * 20 19 18 23 23 C 1.37105 * 119.99352 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00417 * 359.97438 * 23 22 20 25 25 C 1.38956 * 119.99450 * 179.97438 * 23 22 20 26 26 N 1.31409 * 120.00390 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99789 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46730 * 60.00266 * 27 25 23 29 29 H 1.48494 * 109.47300 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46979 * 300.00321 * 27 25 23 31 31 H 1.09003 * 109.47260 * 296.09325 * 1 2 3 32 32 H 1.08997 * 109.46780 * 56.09890 * 1 2 3 33 33 H 1.08999 * 109.46728 * 176.09671 * 1 2 3 34 34 H 1.09000 * 110.36679 * 86.07547 * 4 2 1 35 35 H 1.08998 * 110.45801 * 323.80051 * 4 2 1 36 36 H 1.08995 * 110.97092 * 334.65126 * 10 8 6 37 37 H 1.09002 * 110.96743 * 98.36913 * 10 8 6 38 38 H 1.09000 * 110.24749 * 144.42196 * 11 10 8 39 39 H 1.09008 * 110.24666 * 266.32820 * 11 10 8 40 40 H 0.96998 * 124.35004 * 162.98142 * 12 11 10 41 41 H 1.09004 * 109.87736 * 239.52400 * 15 5 4 42 42 H 1.08993 * 109.88530 * 118.35757 * 15 5 4 43 43 H 1.00901 * 111.00047 * 37.49870 * 18 16 15 44 44 H 1.08994 * 109.47342 * 60.00000 * 19 18 16 45 45 H 1.08997 * 109.46872 * 299.99658 * 19 18 16 46 46 H 0.96993 * 120.00729 * 359.97438 * 22 20 19 47 47 H 0.97002 * 119.99706 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4272 -1.2429 -0.7733 6 6 4.4482 -1.5601 -1.5941 7 8 4.2758 -1.5864 -2.7942 8 6 5.8040 -1.8820 -1.0203 9 1 5.9127 -1.4403 -0.0298 10 6 6.9231 -1.3806 -1.9623 11 6 7.9833 -2.4942 -1.8126 12 7 7.2374 -3.6941 -1.4153 13 6 6.0121 -3.3792 -0.9612 14 8 5.1926 -4.1791 -0.5616 15 6 3.4675 -1.2741 0.6960 16 6 2.0862 -0.8079 1.2022 17 1 1.4480 -1.6632 1.4238 18 7 2.2290 0.0519 2.3847 19 6 2.2897 -0.7498 3.6142 20 6 2.4365 0.1645 4.8032 21 8 2.4862 1.3656 4.6422 22 7 2.5126 -0.3527 6.0455 23 6 2.6456 0.4792 7.1272 24 1 2.6899 1.5487 6.9839 25 6 2.7235 -0.0540 8.4081 26 7 2.6701 -1.3554 8.5825 27 14 2.9055 1.0792 9.8819 28 1 1.7410 1.9986 9.9461 29 1 2.9662 0.2690 11.1248 30 1 4.1544 1.8710 9.7462 31 1 -0.3634 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1718 -2.0837 35 1 1.4526 -1.6703 -1.4044 36 1 6.5676 -1.3162 -2.9907 37 1 7.3148 -0.4205 -1.6263 38 1 8.4903 -2.6625 -2.7626 39 1 8.7062 -2.2256 -1.0422 40 1 7.5841 -4.5981 -1.4730 41 1 4.2427 -0.5996 1.0599 42 1 3.6652 -2.2892 1.0400 43 1 3.0382 0.6490 2.3021 44 1 3.1450 -1.4237 3.5667 45 1 1.3736 -1.3318 3.7139 46 1 2.4725 -1.3132 6.1744 47 1 2.5760 -1.9438 7.8171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215316527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:48 Heat of formation + Delta-G solvation = -98.100145 kcal Electronic energy + Delta-G solvation = -29595.468490 eV Core-core repulsion = 25392.023424 eV Total energy + Delta-G solvation = -4203.445065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33924 -39.87597 -38.56771 -37.90243 -36.72459 -34.87731 -34.08880 -33.04438 -31.81394 -31.11239 -28.97587 -28.60050 -26.50855 -26.10875 -24.03865 -22.88996 -22.32865 -21.60506 -20.63817 -19.61952 -19.26378 -17.96751 -17.92877 -17.79881 -16.68817 -16.47790 -16.40734 -15.79785 -15.22973 -14.93555 -14.80588 -14.39253 -14.22679 -14.21029 -13.98009 -13.73689 -13.71870 -13.47866 -13.16837 -12.98471 -12.91845 -12.51431 -12.49463 -12.32139 -12.23364 -11.79786 -11.65704 -11.28460 -11.24516 -11.09820 -10.96532 -10.80677 -10.37406 -10.22414 -10.20196 -9.89231 -9.60180 -9.57523 -8.94530 -8.57873 -8.23009 -8.06283 -6.77811 -3.91342 1.96022 2.23077 2.63145 2.97909 3.28954 3.33385 3.53632 3.77169 3.81025 3.88877 3.96169 4.12320 4.27382 4.36075 4.40529 4.47070 4.60874 4.80601 4.84239 4.92512 4.97347 5.01680 5.11144 5.21757 5.28412 5.29691 5.42683 5.49597 5.52339 5.57940 5.62686 5.64383 5.79487 5.83551 5.94023 5.97783 6.09899 6.23364 6.25787 6.48925 6.99671 7.16478 7.44854 7.74337 7.77555 7.79569 8.05282 8.56915 8.76479 9.44500 9.83865 10.65538 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.002518 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.349294 B =11117.995776 C =12574.884785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.091 0.909 4 C 0.109 3.891 5 N -0.606 5.606 6 C 0.553 3.447 7 O -0.536 6.536 8 C -0.150 4.150 9 H 0.128 0.872 10 C -0.121 4.121 11 C 0.101 3.899 12 N -0.727 5.727 13 C 0.537 3.463 14 O -0.518 6.518 15 C 0.064 3.936 16 C 0.083 3.917 17 H 0.098 0.902 18 N -0.649 5.649 19 C 0.047 3.953 20 C 0.442 3.558 21 O -0.577 6.577 22 N -0.574 5.574 23 C -0.383 4.383 24 H 0.099 0.901 25 C -0.009 4.009 26 N -0.900 5.900 27 Si 1.091 2.909 28 H -0.283 1.283 29 H -0.279 1.279 30 H -0.284 1.284 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.415 0.585 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.352 0.648 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.376 0.624 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -2.958 -21.489 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.013 4.013 5 N -0.339 5.339 6 C 0.340 3.660 7 O -0.413 6.413 8 C -0.175 4.175 9 H 0.146 0.854 10 C -0.159 4.159 11 C -0.023 4.023 12 N -0.384 5.384 13 C 0.321 3.679 14 O -0.393 6.393 15 C -0.061 4.061 16 C -0.029 4.029 17 H 0.116 0.884 18 N -0.281 5.281 19 C -0.085 4.085 20 C 0.228 3.772 21 O -0.461 6.461 22 N -0.212 5.212 23 C -0.512 4.512 24 H 0.117 0.883 25 C -0.211 4.211 26 N -0.539 5.539 27 Si 0.917 3.083 28 H -0.210 1.210 29 H -0.204 1.204 30 H -0.210 1.210 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.254 0.746 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.173 0.827 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.209 0.791 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.829 -2.313 -20.296 21.539 hybrid contribution 1.069 -1.463 -1.572 2.399 sum 7.898 -3.777 -21.868 23.555 Atomic orbital electron populations 1.21632 0.93071 1.01875 1.02779 1.22360 0.96961 0.99573 0.92194 0.89044 1.22436 0.82267 0.98526 0.98112 1.48270 1.12379 1.66190 1.07016 1.19313 0.84251 0.76531 0.85909 1.90702 1.83419 1.52645 1.14514 1.22123 0.95190 0.96574 1.03606 0.85434 1.22689 0.92959 0.98903 1.01329 1.22133 0.94519 0.84271 1.01403 1.46081 1.15946 1.10268 1.66091 1.20121 0.81935 0.89427 0.76388 1.90809 1.46583 1.55263 1.46657 1.23135 1.00448 1.02519 0.80032 1.22783 0.93618 0.95730 0.90762 0.88416 1.60162 1.48487 1.20143 0.99289 1.21759 1.01445 0.95230 0.90109 1.19683 0.84672 0.89105 0.83724 1.90533 1.55194 1.15196 1.85141 1.41940 1.64959 1.08698 1.05650 1.20531 1.51495 0.93083 0.86103 0.88308 1.26515 0.95569 0.98801 1.00262 1.70903 1.46719 1.02735 1.33553 0.83138 0.77032 0.73872 0.74275 1.20956 1.20407 1.21021 0.90883 0.92552 0.92699 0.90157 0.91058 0.88030 0.88332 0.89556 0.90387 0.74564 0.91130 0.90502 0.82722 0.93713 0.89355 0.79122 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.31 37.16 0.35 -0.94 16 2 C -0.09 -0.93 3.32 -88.47 -0.29 -1.23 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.16 6.36 -2.53 -0.02 1.14 16 5 N -0.61 -7.07 3.33 -170.52 -0.57 -7.63 16 6 C 0.55 6.94 6.81 -10.99 -0.07 6.87 16 7 O -0.54 -8.16 16.19 5.56 0.09 -8.07 16 8 C -0.15 -1.43 2.96 -91.78 -0.27 -1.70 16 9 H 0.13 1.02 6.92 -51.93 -0.36 0.66 16 10 C -0.12 -0.76 6.65 -25.10 -0.17 -0.93 16 11 C 0.10 0.47 7.78 -3.12 -0.02 0.44 16 12 N -0.73 -5.46 6.24 -59.20 -0.37 -5.83 16 13 C 0.54 6.12 7.85 -10.86 -0.09 6.04 16 14 O -0.52 -8.05 17.86 5.56 0.10 -7.95 16 15 C 0.06 0.70 5.84 -3.06 -0.02 0.68 16 16 C 0.08 0.94 2.71 -65.88 -0.18 0.76 16 17 H 0.10 1.09 7.80 -51.93 -0.40 0.69 16 18 N -0.65 -9.39 5.98 -106.06 -0.63 -10.02 16 19 C 0.05 0.77 6.02 -4.97 -0.03 0.74 16 20 C 0.44 10.04 7.82 -10.98 -0.09 9.95 16 21 O -0.58 -15.22 15.78 5.55 0.09 -15.13 16 22 N -0.57 -14.11 5.28 -10.96 -0.06 -14.17 16 23 C -0.38 -10.60 9.68 -14.93 -0.14 -10.74 16 24 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 25 C -0.01 -0.24 5.50 -17.47 -0.10 -0.33 16 26 N -0.90 -24.98 13.68 55.50 0.76 -24.22 16 27 Si 1.09 23.97 29.92 -169.99 -5.09 18.88 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 30 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.07 0.75 7.99 -51.93 -0.41 0.34 16 36 H 0.10 0.79 7.05 -51.93 -0.37 0.42 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 40 H 0.42 2.44 8.96 -40.82 -0.37 2.08 16 41 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.35 5.25 7.85 -39.29 -0.31 4.94 16 44 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 46 H 0.38 8.54 6.73 -40.82 -0.27 8.26 16 47 H 0.26 6.96 6.78 -40.82 -0.28 6.69 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -36.88 387.88 -7.92 -44.80 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.95 Total: 12.76 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -1.14 Total: 10.73 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.87 Total: -61.88 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: 0.28 Total: -31.15 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.09 Total: 18.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.88 -7.92 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215316527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.300 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds