Wall clock time and date at job start Tue Mar 31 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.30642 * 2 1 4 4 C 1.54395 * 110.34184 * 237.71987 * 2 1 3 5 5 N 1.48148 * 104.61695 * 264.99362 * 4 2 1 6 6 C 1.34768 * 127.83521 * 140.39228 * 5 4 2 7 7 O 1.21288 * 119.99964 * 174.85335 * 6 5 4 8 8 C 1.50706 * 120.00382 * 354.85871 * 6 5 4 9 9 C 1.50694 * 115.54504 * 293.80438 * 8 6 5 10 10 N 1.34784 * 120.00510 * 303.31645 * 9 8 6 11 11 O 1.21287 * 120.00063 * 123.31976 * 9 8 6 12 12 C 1.52994 * 117.49975 * 148.13847 * 8 6 5 13 13 C 1.52995 * 117.50217 * 79.47650 * 8 6 5 14 14 C 1.48148 * 104.32223 * 320.41455 * 5 4 2 15 15 C 1.54285 * 110.34753 * 122.18113 * 2 1 3 16 16 H 1.09002 * 110.33760 * 0.02562 * 15 2 1 17 17 N 1.46894 * 110.34449 * 237.84886 * 15 2 1 18 18 C 1.46897 * 111.00091 * 156.47320 * 17 15 2 19 19 C 1.50703 * 109.46906 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00198 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99657 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99862 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00032 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99841 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00459 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00048 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46821 * 90.00080 * 26 24 22 28 28 H 1.48493 * 109.47179 * 210.00174 * 26 24 22 29 29 H 1.48500 * 109.46904 * 330.00461 * 26 24 22 30 30 H 1.08999 * 109.46966 * 297.81750 * 1 2 3 31 31 H 1.08997 * 109.47746 * 57.81962 * 1 2 3 32 32 H 1.09004 * 109.47314 * 177.82203 * 1 2 3 33 33 H 1.09004 * 110.40805 * 23.77833 * 4 2 1 34 34 H 1.08997 * 110.40488 * 146.20852 * 4 2 1 35 35 H 0.97001 * 119.99405 * 355.00030 * 10 9 8 36 36 H 0.96998 * 120.00055 * 174.99906 * 10 9 8 37 37 H 1.09002 * 117.50302 * 359.97438 * 12 8 6 38 38 H 1.09001 * 117.49873 * 145.01947 * 12 8 6 39 39 H 1.08993 * 117.49629 * 214.98243 * 13 8 6 40 40 H 1.08999 * 117.49497 * 359.97438 * 13 8 6 41 41 H 1.09000 * 110.40586 * 280.80294 * 14 5 4 42 42 H 1.08998 * 110.40656 * 158.37291 * 14 5 4 43 43 H 1.00903 * 110.99772 * 280.42685 * 17 15 2 44 44 H 1.08999 * 109.46843 * 299.99875 * 18 17 15 45 45 H 1.08994 * 109.47126 * 60.00107 * 18 17 15 46 46 H 0.97005 * 120.00366 * 0.02562 * 21 19 18 47 47 H 0.96999 * 120.00419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2239 5 7 2.3139 -2.1445 -0.7209 6 6 2.0770 -3.3116 -1.3516 7 8 2.4210 -4.3571 -0.8420 8 6 1.3846 -3.3179 -2.6902 9 6 -0.0504 -2.8576 -2.6817 10 7 -0.9507 -3.4723 -1.8891 11 8 -0.3952 -1.9340 -3.3882 12 6 1.7665 -4.4220 -3.6779 13 6 2.2267 -2.9828 -3.9228 14 6 2.8802 -1.9416 0.6330 15 6 2.0664 -0.7704 1.2243 16 1 1.2398 -1.1493 1.8255 17 7 2.9312 0.0972 2.0350 18 6 2.9984 -0.3762 3.4239 19 6 3.8929 0.5363 4.2229 20 8 4.4220 1.4877 3.6879 21 7 4.1042 0.2958 5.5321 22 6 4.9175 1.1263 6.2591 23 1 5.3886 1.9733 5.7828 24 6 5.1357 0.8780 7.6087 25 7 4.5629 -0.1530 8.1882 26 14 6.2434 2.0099 8.5994 27 1 5.4322 3.1062 9.1871 28 1 6.8940 1.2373 9.6879 29 1 7.2843 2.5860 7.7108 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8697 32 1 -0.3634 -1.0269 -0.0391 33 1 1.3222 -0.7888 -2.0200 34 1 2.9948 -0.3255 -1.5791 35 1 -0.6926 -4.2561 -1.3792 36 1 -1.8566 -3.1309 -1.8287 37 1 2.5189 -5.1438 -3.3599 38 1 0.9799 -4.8152 -4.3220 39 1 1.7427 -2.4298 -4.7277 40 1 3.2815 -2.7575 -3.7655 41 1 3.9354 -1.6764 0.5678 42 1 2.7496 -2.8389 1.2380 43 1 3.8535 0.1669 1.6317 44 1 1.9980 -0.3753 3.8568 45 1 3.4020 -1.3884 3.4437 46 1 3.6807 -0.4648 5.9600 47 1 4.7150 -0.3261 9.1304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215431570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:14 Heat of formation + Delta-G solvation = -74.477814 kcal Electronic energy + Delta-G solvation = -29743.139917 eV Core-core repulsion = 25540.719193 eV Total energy + Delta-G solvation = -4202.420724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19228 -39.67030 -38.59460 -37.95814 -36.26749 -34.74976 -34.06414 -33.80658 -32.50008 -31.24066 -29.24217 -26.91957 -26.62871 -25.39159 -24.14812 -22.97831 -22.80952 -21.53307 -20.35434 -19.46365 -19.20969 -18.26396 -17.89332 -17.53525 -16.62380 -16.36124 -16.04701 -15.83315 -15.49545 -15.16181 -14.69658 -14.52149 -14.35746 -14.18488 -13.93834 -13.79011 -13.62708 -13.41008 -13.18394 -12.96425 -12.34260 -12.28166 -12.13908 -12.05125 -11.68609 -11.58789 -11.54888 -11.20067 -11.11098 -11.08515 -11.03064 -10.89678 -10.58924 -10.40813 -10.23626 -10.16198 -10.06360 -9.53015 -9.08741 -8.50977 -8.13798 -7.98454 -6.43586 -3.84578 1.92155 2.13296 2.44250 2.86520 3.16742 3.25608 3.31197 3.32521 3.87432 3.90679 4.07195 4.23326 4.25416 4.26777 4.35780 4.40222 4.58721 4.79189 5.01511 5.03346 5.06131 5.12942 5.15872 5.23763 5.32420 5.34570 5.38221 5.56494 5.58661 5.59458 5.65177 5.69076 5.77434 5.91244 5.96074 6.02687 6.14725 6.27210 6.27706 6.79714 7.12135 7.17587 7.53298 7.53658 7.72262 7.74192 8.03902 8.58592 9.15726 9.51787 10.02776 10.74056 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.002121 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.737063 B =13196.288547 C =13476.872421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.104 0.896 4 C 0.096 3.904 5 N -0.609 5.609 6 C 0.575 3.425 7 O -0.531 6.531 8 C -0.199 4.199 9 C 0.567 3.433 10 N -0.845 5.845 11 O -0.529 6.529 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.075 3.925 15 C 0.080 3.920 16 H 0.091 0.909 17 N -0.653 5.653 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.406 0.594 36 H 0.406 0.594 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.352 0.648 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 -9.479 -21.773 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.122 0.878 4 C -0.027 4.027 5 N -0.342 5.342 6 C 0.361 3.639 7 O -0.407 6.407 8 C -0.206 4.206 9 C 0.350 3.650 10 N -0.409 5.409 11 O -0.405 6.405 12 C -0.163 4.163 13 C -0.165 4.165 14 C -0.050 4.050 15 C -0.032 4.032 16 H 0.109 0.891 17 N -0.285 5.285 18 C -0.085 4.085 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.235 0.765 36 H 0.238 0.762 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.173 0.827 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.459 -8.478 -22.064 25.847 hybrid contribution 0.541 -1.011 1.235 1.686 sum -9.918 -9.489 -20.828 24.945 Atomic orbital electron populations 1.21779 0.94144 1.01314 1.02320 1.22156 0.96343 1.00699 0.92586 0.87782 1.22745 1.01514 0.80762 0.97677 1.48798 1.62100 1.05702 1.17589 1.18623 0.78745 0.82320 0.84184 1.90749 1.52514 1.30915 1.66548 1.21435 0.94856 1.11597 0.92705 1.18960 0.85302 0.81670 0.79089 1.43762 1.14756 1.33853 1.48497 1.90775 1.80034 1.28757 1.40922 1.23112 1.03575 0.92121 0.97522 1.23123 0.99711 0.98350 0.95329 1.23357 0.98072 1.00620 0.82919 1.22645 0.96176 0.90132 0.94222 0.89112 1.60261 1.17914 1.49204 1.01098 1.21752 1.00789 0.96506 0.89432 1.19762 0.86302 0.88110 0.83260 1.90527 1.53824 1.31948 1.70470 1.41867 1.43197 1.27403 1.07464 1.19700 1.23337 1.08554 0.91311 0.87897 1.25271 0.98318 0.97290 0.97062 1.69611 1.44003 1.27917 1.12737 0.85854 0.79883 0.79482 0.79055 1.20368 1.20933 1.19409 0.91826 0.92330 0.93382 0.89375 0.90447 0.76526 0.76214 0.86633 0.87294 0.86457 0.87298 0.90548 0.89745 0.82738 0.89455 0.93682 0.77448 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.90 37.15 0.33 -0.98 16 2 C -0.10 -1.00 3.45 -89.22 -0.31 -1.31 16 3 H 0.10 1.14 7.95 -51.93 -0.41 0.73 16 4 C 0.10 0.91 6.45 -2.40 -0.02 0.89 16 5 N -0.61 -6.46 3.32 -169.30 -0.56 -7.02 16 6 C 0.57 6.44 7.12 -10.99 -0.08 6.36 16 7 O -0.53 -7.53 17.02 5.55 0.09 -7.43 16 8 C -0.20 -1.76 1.50 -156.82 -0.24 -1.99 16 9 C 0.57 5.15 6.48 -10.99 -0.07 5.08 16 10 N -0.85 -5.36 8.84 31.22 0.28 -5.08 16 11 O -0.53 -6.25 16.69 5.55 0.09 -6.16 16 12 C -0.13 -0.87 9.76 -26.70 -0.26 -1.13 16 13 C -0.13 -0.92 9.75 -26.70 -0.26 -1.18 16 14 C 0.07 0.85 6.68 -2.41 -0.02 0.83 16 15 C 0.08 0.92 3.02 -66.32 -0.20 0.72 16 16 H 0.09 1.04 7.41 -51.93 -0.38 0.66 16 17 N -0.65 -9.67 5.84 -106.52 -0.62 -10.29 16 18 C 0.05 0.80 6.01 -4.98 -0.03 0.77 16 19 C 0.44 10.12 7.82 -10.98 -0.09 10.03 16 20 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 21 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 26 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.86 5.67 -51.93 -0.29 0.56 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.41 2.15 8.83 -40.82 -0.36 1.79 16 36 H 0.41 2.00 8.93 -40.82 -0.36 1.63 16 37 H 0.12 0.83 8.01 -51.93 -0.42 0.41 16 38 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.82 7.85 -51.93 -0.41 0.41 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.87 7.58 -51.93 -0.39 0.48 16 42 H 0.08 1.03 7.93 -51.93 -0.41 0.61 16 43 H 0.35 5.38 7.83 -39.29 -0.31 5.08 16 44 H 0.09 1.35 8.07 -51.93 -0.42 0.94 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -34.02 395.25 -7.47 -41.49 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.96 Total: 15.63 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.47 Total: 10.17 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.24 Total: -60.19 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.27 Total: -28.97 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.02 -7.47 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215431570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.991 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds