Wall clock time and date at job start Tue Mar 31 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.30642 * 2 1 4 4 C 1.54395 * 110.34184 * 237.71987 * 2 1 3 5 5 N 1.48148 * 104.61695 * 264.99362 * 4 2 1 6 6 C 1.34768 * 127.83521 * 140.39228 * 5 4 2 7 7 O 1.21288 * 119.99964 * 174.85335 * 6 5 4 8 8 C 1.50706 * 120.00382 * 354.85871 * 6 5 4 9 9 C 1.50694 * 115.54504 * 293.80438 * 8 6 5 10 10 N 1.34784 * 120.00510 * 303.31645 * 9 8 6 11 11 O 1.21287 * 120.00063 * 123.31976 * 9 8 6 12 12 C 1.52994 * 117.49975 * 148.13847 * 8 6 5 13 13 C 1.52995 * 117.50217 * 79.47650 * 8 6 5 14 14 C 1.48148 * 104.32223 * 320.41455 * 5 4 2 15 15 C 1.54285 * 110.34753 * 122.18113 * 2 1 3 16 16 H 1.09002 * 110.33760 * 0.02562 * 15 2 1 17 17 N 1.46894 * 110.34449 * 237.84886 * 15 2 1 18 18 C 1.46897 * 111.00091 * 156.47320 * 17 15 2 19 19 C 1.50703 * 109.46906 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00198 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99657 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99862 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00032 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99841 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00459 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00048 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46821 * 90.00080 * 26 24 22 28 28 H 1.48493 * 109.47179 * 210.00174 * 26 24 22 29 29 H 1.48500 * 109.46904 * 330.00461 * 26 24 22 30 30 H 1.08999 * 109.46966 * 297.81750 * 1 2 3 31 31 H 1.08997 * 109.47746 * 57.81962 * 1 2 3 32 32 H 1.09004 * 109.47314 * 177.82203 * 1 2 3 33 33 H 1.09004 * 110.40805 * 23.77833 * 4 2 1 34 34 H 1.08997 * 110.40488 * 146.20852 * 4 2 1 35 35 H 0.97001 * 119.99405 * 355.00030 * 10 9 8 36 36 H 0.96998 * 120.00055 * 174.99906 * 10 9 8 37 37 H 1.09002 * 117.50302 * 359.97438 * 12 8 6 38 38 H 1.09001 * 117.49873 * 145.01947 * 12 8 6 39 39 H 1.08993 * 117.49629 * 214.98243 * 13 8 6 40 40 H 1.08999 * 117.49497 * 359.97438 * 13 8 6 41 41 H 1.09000 * 110.40586 * 280.80294 * 14 5 4 42 42 H 1.08998 * 110.40656 * 158.37291 * 14 5 4 43 43 H 1.00903 * 110.99772 * 280.42685 * 17 15 2 44 44 H 1.08999 * 109.46843 * 299.99875 * 18 17 15 45 45 H 1.08994 * 109.47126 * 60.00107 * 18 17 15 46 46 H 0.97005 * 120.00366 * 0.02562 * 21 19 18 47 47 H 0.96999 * 120.00419 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2239 5 7 2.3139 -2.1445 -0.7209 6 6 2.0770 -3.3116 -1.3516 7 8 2.4210 -4.3571 -0.8420 8 6 1.3846 -3.3179 -2.6902 9 6 -0.0504 -2.8576 -2.6817 10 7 -0.9507 -3.4723 -1.8891 11 8 -0.3952 -1.9340 -3.3882 12 6 1.7665 -4.4220 -3.6779 13 6 2.2267 -2.9828 -3.9228 14 6 2.8802 -1.9416 0.6330 15 6 2.0664 -0.7704 1.2243 16 1 1.2398 -1.1493 1.8255 17 7 2.9312 0.0972 2.0350 18 6 2.9984 -0.3762 3.4239 19 6 3.8929 0.5363 4.2229 20 8 4.4220 1.4877 3.6879 21 7 4.1042 0.2958 5.5321 22 6 4.9175 1.1263 6.2591 23 1 5.3886 1.9733 5.7828 24 6 5.1357 0.8780 7.6087 25 7 4.5629 -0.1530 8.1882 26 14 6.2434 2.0099 8.5994 27 1 5.4322 3.1062 9.1871 28 1 6.8940 1.2373 9.6879 29 1 7.2843 2.5860 7.7108 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8697 32 1 -0.3634 -1.0269 -0.0391 33 1 1.3222 -0.7888 -2.0200 34 1 2.9948 -0.3255 -1.5791 35 1 -0.6926 -4.2561 -1.3792 36 1 -1.8566 -3.1309 -1.8287 37 1 2.5189 -5.1438 -3.3599 38 1 0.9799 -4.8152 -4.3220 39 1 1.7427 -2.4298 -4.7277 40 1 3.2815 -2.7575 -3.7655 41 1 3.9354 -1.6764 0.5678 42 1 2.7496 -2.8389 1.2380 43 1 3.8535 0.1669 1.6317 44 1 1.9980 -0.3753 3.8568 45 1 3.4020 -1.3884 3.4437 46 1 3.6807 -0.4648 5.9600 47 1 4.7150 -0.3261 9.1304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215431570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:14 Heat of formation + Delta-G solvation = -102.496082 kcal Electronic energy + Delta-G solvation = -29744.354880 eV Core-core repulsion = 25540.719193 eV Total energy + Delta-G solvation = -4203.635687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97588 -40.57999 -40.01741 -39.19733 -36.96598 -36.20904 -35.52815 -34.69171 -33.43905 -33.21652 -30.33740 -28.09262 -27.63210 -26.51240 -25.55996 -23.82567 -23.51604 -22.31647 -21.42575 -20.90222 -20.14599 -19.89744 -19.03271 -18.16683 -17.83138 -17.29217 -17.13328 -16.99551 -16.63581 -16.38126 -15.99449 -15.75376 -15.49449 -15.32108 -15.18981 -14.89221 -14.55610 -14.32335 -14.21903 -14.06353 -13.86328 -13.50141 -13.33730 -13.07175 -12.89190 -12.83775 -12.68316 -12.41924 -12.26871 -12.13603 -12.06347 -11.93060 -11.83305 -11.71399 -11.50438 -11.31733 -10.90594 -10.77751 -10.34937 -10.01906 -9.98321 -9.36212 -8.46674 -5.95322 1.15347 1.36308 1.38138 1.42097 1.54600 1.63873 2.05331 2.27554 2.28934 2.68204 2.85829 3.19948 3.21291 3.44231 3.53549 3.62918 3.67811 3.73895 3.80406 3.90878 4.12504 4.18255 4.32090 4.41458 4.48411 4.50124 4.56168 4.60232 4.61303 4.72805 4.78470 4.79295 4.81758 4.89811 5.06559 5.10479 5.22556 5.33777 5.41394 5.74941 5.88061 6.07915 6.21731 6.31019 6.34154 6.59723 6.86046 7.12650 7.13626 7.56361 8.11199 8.70685 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024978 B = 0.002121 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.737063 B =13196.288547 C =13476.872421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 H 0.098 0.902 4 C 0.102 3.898 5 N -0.607 5.607 6 C 0.576 3.424 7 O -0.564 6.564 8 C -0.211 4.211 9 C 0.568 3.432 10 N -0.832 5.832 11 O -0.559 6.559 12 C -0.114 4.114 13 C -0.121 4.121 14 C 0.077 3.923 15 C 0.088 3.912 16 H 0.096 0.904 17 N -0.661 5.661 18 C 0.063 3.937 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.414 0.586 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.348 0.652 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 -10.011 -22.430 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.021 4.021 5 N -0.339 5.339 6 C 0.364 3.636 7 O -0.443 6.443 8 C -0.218 4.218 9 C 0.351 3.649 10 N -0.395 5.395 11 O -0.437 6.437 12 C -0.152 4.152 13 C -0.159 4.159 14 C -0.048 4.048 15 C -0.024 4.024 16 H 0.114 0.886 17 N -0.293 5.293 18 C -0.070 4.070 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.242 0.758 36 H 0.247 0.753 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.168 0.832 44 H 0.124 0.876 45 H 0.084 0.916 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.163 -9.036 -22.716 26.876 hybrid contribution 0.722 -0.866 1.391 1.791 sum -10.441 -9.902 -21.326 25.727 Atomic orbital electron populations 1.21722 0.93381 1.01464 1.02400 1.22108 0.96868 1.00229 0.92131 0.88364 1.22755 1.02051 0.79968 0.97277 1.48833 1.61663 1.06139 1.17258 1.18968 0.78214 0.81760 0.84679 1.90731 1.53994 1.32000 1.67575 1.21382 0.94823 1.13694 0.91872 1.18977 0.85548 0.81325 0.79010 1.43686 1.14840 1.33560 1.47447 1.90763 1.80508 1.30092 1.42344 1.23213 1.03714 0.91794 0.96436 1.23199 0.99714 0.98648 0.94321 1.23246 0.98047 1.00090 0.83395 1.22622 0.95553 0.89914 0.94279 0.88600 1.60270 1.18149 1.50390 1.00479 1.21606 1.00071 0.95636 0.89653 1.20826 0.85688 0.88023 0.82812 1.90497 1.55292 1.33865 1.71134 1.41944 1.43447 1.27438 1.08277 1.19660 1.25042 1.09115 0.92365 0.90244 1.26038 0.99266 0.98585 0.97445 1.69671 1.44546 1.28730 1.13242 0.84938 0.78050 0.77834 0.77597 1.19655 1.19635 1.19711 0.92148 0.91824 0.93190 0.89163 0.89457 0.75762 0.75273 0.86881 0.85581 0.86026 0.86852 0.90654 0.90456 0.83157 0.87637 0.91569 0.76995 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.90 71.98 0.64 -1.65 16 2 C -0.09 -1.77 3.45 -9.89 -0.03 -1.81 16 3 H 0.10 2.04 7.95 -2.39 -0.02 2.02 16 4 C 0.10 1.78 6.45 86.54 0.56 2.33 16 5 N -0.61 -12.11 3.32 -807.93 -2.68 -14.79 16 6 C 0.58 12.23 7.12 87.66 0.62 12.86 16 7 O -0.56 -15.58 17.02 -3.05 -0.05 -15.63 16 8 C -0.21 -3.41 1.50 -53.68 -0.08 -3.49 16 9 C 0.57 9.43 6.48 87.65 0.57 10.00 16 10 N -0.83 -9.16 8.84 -173.52 -1.53 -10.70 16 11 O -0.56 -12.40 16.69 -3.05 -0.05 -12.45 16 12 C -0.11 -1.37 9.76 30.62 0.30 -1.07 16 13 C -0.12 -1.55 9.75 30.62 0.30 -1.25 16 14 C 0.08 1.66 6.68 86.53 0.58 2.24 16 15 C 0.09 1.89 3.02 45.82 0.14 2.03 16 16 H 0.10 2.01 7.41 -2.39 -0.02 1.99 16 17 N -0.66 -18.92 5.84 -490.91 -2.87 -21.79 16 18 C 0.06 2.02 6.01 85.56 0.51 2.54 16 19 C 0.44 20.29 7.82 87.66 0.69 20.97 16 20 O -0.62 -33.52 15.78 -3.06 -0.05 -33.57 16 21 N -0.57 -29.02 5.29 -306.98 -1.62 -30.65 16 22 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.61 5.67 -2.38 -0.01 1.59 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.41 3.70 8.83 -92.71 -0.82 2.88 16 36 H 0.41 3.36 8.93 -92.71 -0.83 2.53 16 37 H 0.11 1.45 8.01 -2.39 -0.02 1.43 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 1.48 7.85 -2.39 -0.02 1.46 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.66 7.58 -2.39 -0.02 1.64 16 42 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16 43 H 0.35 10.47 7.83 -89.69 -0.70 9.77 16 44 H 0.11 3.08 8.07 -2.39 -0.02 3.06 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.40 19.06 7.90 -92.70 -0.73 18.32 16 47 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -73.12 395.25 -2.51 -75.63 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -2.03 Total: 42.88 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 6.07 Total: 25.54 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -8.42 Total: -127.17 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -0.15 Total: -61.66 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.12 -2.51 -75.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215431570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.870 kcal (2) G-P(sol) polarization free energy of solvation -73.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds