Wall clock time and date at job start Tue Mar 31 2020 22:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.38211 * 2 1 4 4 C 1.54390 * 110.34306 * 237.77078 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.99121 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21281 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99492 * 0.02562 * 6 5 4 9 9 H 1.09002 * 110.22054 * 40.70002 * 8 6 5 10 10 C 1.54473 * 110.24651 * 278.76787 * 8 6 5 11 11 C 1.54860 * 101.66518 * 266.39454 * 10 8 6 12 12 C 1.51279 * 104.20293 * 335.19104 * 11 10 8 13 13 O 1.21283 * 124.93888 * 196.24022 * 12 11 10 14 14 N 1.34419 * 110.11977 * 16.26674 * 12 11 10 15 15 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 16 16 C 1.54281 * 110.34387 * 122.22769 * 2 1 3 17 17 H 1.09002 * 110.34302 * 0.02562 * 16 2 1 18 18 N 1.46900 * 110.34388 * 237.84917 * 16 2 1 19 19 C 1.46905 * 111.00006 * 156.47697 * 18 16 2 20 20 C 1.50698 * 109.46904 * 180.02562 * 19 18 16 21 21 O 1.21286 * 120.00006 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99731 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99850 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00344 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00057 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99750 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00336 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47063 * 89.99821 * 27 25 23 29 29 H 1.48499 * 109.47321 * 209.99851 * 27 25 23 30 30 H 1.48504 * 109.46932 * 329.99789 * 27 25 23 31 31 H 1.08996 * 109.47126 * 297.76671 * 1 2 3 32 32 H 1.08995 * 109.47333 * 57.77328 * 1 2 3 33 33 H 1.09000 * 109.46800 * 177.77128 * 1 2 3 34 34 H 1.08998 * 110.40404 * 23.77673 * 4 2 1 35 35 H 1.09004 * 110.40272 * 146.20913 * 4 2 1 36 36 H 1.09006 * 110.97075 * 24.53934 * 10 8 6 37 37 H 1.09004 * 110.97250 * 148.29795 * 10 8 6 38 38 H 1.08995 * 110.46826 * 216.51750 * 11 10 8 39 39 H 1.08999 * 110.59951 * 93.93299 * 11 10 8 40 40 H 0.97002 * 124.35178 * 180.42464 * 14 12 11 41 41 H 1.08990 * 110.41068 * 280.80521 * 15 5 4 42 42 H 1.09000 * 110.40585 * 158.36660 * 15 5 4 43 43 H 1.00897 * 110.99928 * 32.52063 * 18 16 2 44 44 H 1.08997 * 109.46603 * 300.00175 * 19 18 16 45 45 H 1.09001 * 109.46603 * 59.99994 * 19 18 16 46 46 H 0.96996 * 119.99667 * 359.97438 * 22 20 19 47 47 H 0.97000 * 119.99650 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0668 -0.7720 -1.2246 5 7 2.3141 -2.1437 -0.7226 6 6 2.0776 -3.3105 -1.3545 7 8 2.3359 -4.3607 -0.8056 8 6 1.4921 -3.3101 -2.7432 9 1 1.9434 -2.5190 -3.3421 10 6 -0.0398 -3.1229 -2.6774 11 6 -0.5351 -4.5901 -2.6837 12 6 0.5813 -5.3558 -3.3590 13 8 0.4799 -6.4762 -3.8122 14 7 1.7020 -4.6141 -3.3831 15 6 2.8804 -1.9421 0.6314 16 6 2.0664 -0.7714 1.2237 17 1 1.2399 -1.1508 1.8246 18 7 2.9312 0.0956 2.0351 19 6 2.9984 -0.3790 3.4238 20 6 3.8918 0.5335 4.2238 21 8 4.4210 1.4852 3.6896 22 7 4.1037 0.2914 5.5326 23 6 4.9169 1.1213 6.2603 24 1 5.3881 1.9687 5.7847 25 6 5.1350 0.8720 7.6097 26 7 4.5612 -0.1589 8.1886 27 14 6.2436 2.0023 8.6012 28 1 5.4335 3.0990 9.1894 29 1 6.8935 1.2285 9.6893 30 1 7.2852 2.5779 7.7128 31 1 -0.3633 0.4787 0.9093 32 1 -0.3634 0.5480 -0.8693 33 1 -0.3633 -1.0269 -0.0400 34 1 1.3223 -0.7869 -2.0205 35 1 2.9950 -0.3240 -1.5793 36 1 -0.3317 -2.6153 -1.7580 37 1 -0.4048 -2.5837 -3.5516 38 1 -1.4586 -4.6782 -3.2560 39 1 -0.6826 -4.9495 -1.6653 40 1 2.5415 -4.9033 -3.7736 41 1 3.9355 -1.6768 0.5665 42 1 2.7496 -2.8399 1.2355 43 1 2.6209 1.0548 1.9954 44 1 1.9980 -0.3785 3.8566 45 1 3.4020 -1.3914 3.4425 46 1 3.6808 -0.4699 5.9596 47 1 4.7132 -0.3326 9.1307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216455497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:36 Heat of formation + Delta-G solvation = -94.573765 kcal Electronic energy + Delta-G solvation = -29337.737511 eV Core-core repulsion = 25134.445362 eV Total energy + Delta-G solvation = -4203.292150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32479 -39.90124 -38.51917 -37.91408 -36.43014 -34.83196 -33.84741 -32.58472 -31.80836 -31.25354 -29.84582 -28.10133 -26.88479 -26.24435 -24.38441 -23.29229 -22.15980 -21.02301 -20.45210 -19.89754 -19.20811 -18.02110 -17.92848 -17.65009 -16.48139 -16.44179 -15.94003 -15.55801 -15.39833 -14.90909 -14.78667 -14.61089 -14.30001 -14.06591 -13.92950 -13.91841 -13.63550 -13.58011 -13.33079 -13.15080 -13.07192 -12.48730 -12.35976 -12.05170 -12.01000 -11.79803 -11.68765 -11.57058 -11.31219 -11.23694 -11.06019 -10.91520 -10.57561 -10.42053 -10.25293 -10.24958 -9.54666 -9.45001 -9.05337 -8.53539 -8.20204 -8.00287 -6.45017 -3.86117 2.10491 2.19706 2.50813 2.99030 3.15288 3.24488 3.30158 3.81127 3.85338 3.86459 3.92021 4.03321 4.16964 4.24585 4.27651 4.43528 4.57534 4.60866 4.81438 4.95916 5.05361 5.08826 5.12023 5.18167 5.19233 5.24763 5.26864 5.35013 5.39585 5.52951 5.63240 5.68545 5.73537 5.75777 5.87396 5.91029 6.00795 6.22604 6.29101 6.57220 7.08401 7.19746 7.51452 7.52046 7.75231 7.86685 8.02167 8.56844 9.14074 9.50138 10.00911 10.72555 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.001968 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.033602 B =14225.035145 C =14752.364274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.099 0.901 4 C 0.104 3.896 5 N -0.618 5.618 6 C 0.518 3.482 7 O -0.526 6.526 8 C 0.118 3.882 9 H 0.113 0.887 10 C -0.121 4.121 11 C -0.157 4.157 12 C 0.528 3.472 13 O -0.530 6.530 14 N -0.710 5.710 15 C 0.113 3.887 16 C 0.077 3.923 17 H 0.058 0.942 18 N -0.658 5.658 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.278 1.278 29 H -0.283 1.283 30 H -0.269 1.269 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.415 0.585 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.354 0.646 44 H 0.045 0.955 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 -2.102 -22.070 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.117 0.883 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.304 3.696 7 O -0.402 6.402 8 C 0.007 3.993 9 H 0.131 0.869 10 C -0.159 4.159 11 C -0.197 4.197 12 C 0.315 3.685 13 O -0.406 6.406 14 N -0.365 5.365 15 C -0.010 4.010 16 C -0.035 4.035 17 H 0.076 0.924 18 N -0.292 5.292 19 C -0.084 4.084 20 C 0.225 3.775 21 O -0.469 6.469 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.254 0.746 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.175 0.825 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.226 0.774 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.610 -3.098 -22.363 25.386 hybrid contribution -0.033 0.306 1.250 1.287 sum -11.643 -2.792 -21.113 24.271 Atomic orbital electron populations 1.21886 0.94031 1.01919 1.02426 1.22319 0.96213 1.00364 0.94032 0.88312 1.22554 1.01175 0.81407 0.96729 1.48956 1.62888 1.05370 1.18068 1.20573 0.78746 0.82501 0.87739 1.90773 1.51905 1.30398 1.67095 1.21517 0.98271 0.87641 0.91821 0.86915 1.22661 0.90896 0.97236 1.05072 1.22403 0.98801 0.94735 1.03803 1.20803 0.84837 0.85228 0.77632 1.90771 1.83710 1.17951 1.48173 1.45897 1.14496 1.17041 1.59078 1.22486 0.98567 0.98078 0.81902 1.22493 0.93567 0.93592 0.93832 0.92395 1.60102 1.53431 1.06062 1.09613 1.21756 0.98574 0.99659 0.88390 1.19755 0.86657 0.88038 0.83013 1.90520 1.53834 1.32175 1.70332 1.41869 1.43169 1.27363 1.07475 1.19695 1.23449 1.08563 0.91259 0.87887 1.25280 0.98296 0.97296 0.97099 1.69613 1.43914 1.27866 1.12781 0.85849 0.79894 0.79436 0.79062 1.20416 1.20905 1.19384 0.92077 0.92035 0.92593 0.90114 0.90099 0.88532 0.88333 0.87425 0.87357 0.74601 0.89304 0.90144 0.82485 0.93666 0.89565 0.77439 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.90 37.16 0.33 -0.47 16 2 C -0.11 -0.77 3.33 -89.22 -0.30 -1.06 16 3 H 0.10 0.71 7.55 -51.93 -0.39 0.32 16 4 C 0.10 0.61 6.31 -2.41 -0.02 0.59 16 5 N -0.62 -5.42 3.32 -169.31 -0.56 -5.98 16 6 C 0.52 5.14 7.09 -10.98 -0.08 5.06 16 7 O -0.53 -7.75 16.84 5.56 0.09 -7.66 16 8 C 0.12 0.72 3.09 -68.17 -0.21 0.51 16 9 H 0.11 0.37 7.68 -51.93 -0.40 -0.03 16 10 C -0.12 -0.49 6.33 -24.98 -0.16 -0.64 16 11 C -0.16 -1.03 6.86 -26.62 -0.18 -1.21 16 12 C 0.53 5.49 8.43 -10.86 -0.09 5.40 16 13 O -0.53 -7.79 18.03 5.56 0.10 -7.69 16 14 N -0.71 -5.87 5.46 -53.88 -0.29 -6.17 16 15 C 0.11 1.25 6.73 -2.41 -0.02 1.23 16 16 C 0.08 0.78 3.03 -66.31 -0.20 0.58 16 17 H 0.06 0.60 7.41 -51.93 -0.38 0.22 16 18 N -0.66 -9.13 5.91 -106.51 -0.63 -9.76 16 19 C 0.05 0.80 6.01 -4.97 -0.03 0.77 16 20 C 0.44 9.93 7.82 -10.98 -0.09 9.85 16 21 O -0.58 -15.18 15.78 5.55 0.09 -15.09 16 22 N -0.56 -13.91 5.29 -10.97 -0.06 -13.96 16 23 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 24 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 27 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.31 7.92 -51.93 -0.41 -0.10 16 34 H 0.08 0.24 6.67 -51.93 -0.35 -0.11 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.34 7.66 -51.93 -0.40 -0.05 16 37 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.41 3.12 8.96 -40.82 -0.37 2.75 16 41 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 42 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 43 H 0.35 4.98 7.79 -39.29 -0.31 4.67 16 44 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -36.34 389.66 -8.01 -44.35 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.04 Total: 11.14 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -1.28 Total: 12.72 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.82 Total: -59.40 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: 0.28 Total: -30.44 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.34 -8.01 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216455497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.228 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds