Wall clock time and date at job start Tue Mar 31 2020 22:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.38211 * 2 1 4 4 C 1.54390 * 110.34306 * 237.77078 * 2 1 3 5 5 N 1.48140 * 104.61426 * 264.99121 * 4 2 1 6 6 C 1.34784 * 127.83889 * 140.41580 * 5 4 2 7 7 O 1.21281 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99492 * 0.02562 * 6 5 4 9 9 H 1.09002 * 110.22054 * 40.70002 * 8 6 5 10 10 C 1.54473 * 110.24651 * 278.76787 * 8 6 5 11 11 C 1.54860 * 101.66518 * 266.39454 * 10 8 6 12 12 C 1.51279 * 104.20293 * 335.19104 * 11 10 8 13 13 O 1.21283 * 124.93888 * 196.24022 * 12 11 10 14 14 N 1.34419 * 110.11977 * 16.26674 * 12 11 10 15 15 C 1.48145 * 104.32775 * 320.41323 * 5 4 2 16 16 C 1.54281 * 110.34387 * 122.22769 * 2 1 3 17 17 H 1.09002 * 110.34302 * 0.02562 * 16 2 1 18 18 N 1.46900 * 110.34388 * 237.84917 * 16 2 1 19 19 C 1.46905 * 111.00006 * 156.47697 * 18 16 2 20 20 C 1.50698 * 109.46904 * 180.02562 * 19 18 16 21 21 O 1.21286 * 120.00006 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99731 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99850 * 179.97438 * 22 20 19 24 24 H 1.08003 * 120.00344 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00057 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99750 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00336 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47063 * 89.99821 * 27 25 23 29 29 H 1.48499 * 109.47321 * 209.99851 * 27 25 23 30 30 H 1.48504 * 109.46932 * 329.99789 * 27 25 23 31 31 H 1.08996 * 109.47126 * 297.76671 * 1 2 3 32 32 H 1.08995 * 109.47333 * 57.77328 * 1 2 3 33 33 H 1.09000 * 109.46800 * 177.77128 * 1 2 3 34 34 H 1.08998 * 110.40404 * 23.77673 * 4 2 1 35 35 H 1.09004 * 110.40272 * 146.20913 * 4 2 1 36 36 H 1.09006 * 110.97075 * 24.53934 * 10 8 6 37 37 H 1.09004 * 110.97250 * 148.29795 * 10 8 6 38 38 H 1.08995 * 110.46826 * 216.51750 * 11 10 8 39 39 H 1.08999 * 110.59951 * 93.93299 * 11 10 8 40 40 H 0.97002 * 124.35178 * 180.42464 * 14 12 11 41 41 H 1.08990 * 110.41068 * 280.80521 * 15 5 4 42 42 H 1.09000 * 110.40585 * 158.36660 * 15 5 4 43 43 H 1.00897 * 110.99928 * 32.52063 * 18 16 2 44 44 H 1.08997 * 109.46603 * 300.00175 * 19 18 16 45 45 H 1.09001 * 109.46603 * 59.99994 * 19 18 16 46 46 H 0.96996 * 119.99667 * 359.97438 * 22 20 19 47 47 H 0.97000 * 119.99650 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0668 -0.7720 -1.2246 5 7 2.3141 -2.1437 -0.7226 6 6 2.0776 -3.3105 -1.3545 7 8 2.3359 -4.3607 -0.8056 8 6 1.4921 -3.3101 -2.7432 9 1 1.9434 -2.5190 -3.3421 10 6 -0.0398 -3.1229 -2.6774 11 6 -0.5351 -4.5901 -2.6837 12 6 0.5813 -5.3558 -3.3590 13 8 0.4799 -6.4762 -3.8122 14 7 1.7020 -4.6141 -3.3831 15 6 2.8804 -1.9421 0.6314 16 6 2.0664 -0.7714 1.2237 17 1 1.2399 -1.1508 1.8246 18 7 2.9312 0.0956 2.0351 19 6 2.9984 -0.3790 3.4238 20 6 3.8918 0.5335 4.2238 21 8 4.4210 1.4852 3.6896 22 7 4.1037 0.2914 5.5326 23 6 4.9169 1.1213 6.2603 24 1 5.3881 1.9687 5.7847 25 6 5.1350 0.8720 7.6097 26 7 4.5612 -0.1589 8.1886 27 14 6.2436 2.0023 8.6012 28 1 5.4335 3.0990 9.1894 29 1 6.8935 1.2285 9.6893 30 1 7.2852 2.5779 7.7128 31 1 -0.3633 0.4787 0.9093 32 1 -0.3634 0.5480 -0.8693 33 1 -0.3633 -1.0269 -0.0400 34 1 1.3223 -0.7869 -2.0205 35 1 2.9950 -0.3240 -1.5793 36 1 -0.3317 -2.6153 -1.7580 37 1 -0.4048 -2.5837 -3.5516 38 1 -1.4586 -4.6782 -3.2560 39 1 -0.6826 -4.9495 -1.6653 40 1 2.5415 -4.9033 -3.7736 41 1 3.9355 -1.6768 0.5665 42 1 2.7496 -2.8399 1.2355 43 1 2.6209 1.0548 1.9954 44 1 1.9980 -0.3785 3.8566 45 1 3.4020 -1.3914 3.4425 46 1 3.6808 -0.4699 5.9596 47 1 4.7132 -0.3326 9.1307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216455497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:35 Heat of formation + Delta-G solvation = -125.565859 kcal Electronic energy + Delta-G solvation = -29339.081429 eV Core-core repulsion = 25134.445362 eV Total energy + Delta-G solvation = -4204.636068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00255 -40.70880 -40.05961 -39.00743 -37.20840 -36.20916 -35.53526 -33.38859 -33.16182 -32.32286 -30.67559 -29.04878 -27.69706 -27.27493 -25.95062 -24.00974 -22.86297 -21.69449 -21.34222 -20.89176 -20.51775 -19.87954 -18.67285 -18.45112 -17.69645 -17.17690 -17.08387 -16.77645 -16.47172 -16.20812 -15.95983 -15.63464 -15.40338 -15.21276 -15.05251 -14.73893 -14.47797 -14.34483 -14.22348 -13.98950 -13.64741 -13.62481 -13.47366 -13.45144 -12.94773 -12.80668 -12.72620 -12.49196 -12.42170 -12.25178 -12.13449 -11.89843 -11.88689 -11.64504 -11.50578 -11.36023 -11.04128 -10.35386 -10.16833 -10.02260 -9.82523 -9.36875 -8.47130 -5.95957 1.35252 1.37825 1.41815 1.47018 1.54574 1.82046 2.04507 2.28526 2.37327 2.91104 3.20296 3.27643 3.33545 3.46953 3.49509 3.60251 3.79128 3.89902 4.04787 4.20005 4.28110 4.33029 4.37146 4.42531 4.48409 4.55309 4.57039 4.68451 4.78065 4.83769 4.88643 4.92221 4.96277 5.01265 5.05385 5.18001 5.30047 5.40615 5.47648 5.67150 5.89092 5.89649 6.09117 6.39713 6.53029 6.58867 7.01037 7.11881 7.14005 7.55685 8.10083 8.70219 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.001968 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.033602 B =14225.035145 C =14752.364274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.100 0.900 4 C 0.104 3.896 5 N -0.611 5.611 6 C 0.514 3.486 7 O -0.586 6.586 8 C 0.120 3.880 9 H 0.156 0.844 10 C -0.108 4.108 11 C -0.156 4.156 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.708 5.708 15 C 0.112 3.888 16 C 0.080 3.920 17 H 0.060 0.940 18 N -0.668 5.668 19 C 0.064 3.936 20 C 0.439 3.561 21 O -0.620 6.620 22 N -0.575 5.575 23 C -0.332 4.332 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.922 5.922 27 Si 0.994 3.006 28 H -0.269 1.269 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.414 0.586 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.354 0.646 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 -0.268 -23.674 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.118 0.882 4 C -0.018 4.018 5 N -0.344 5.344 6 C 0.302 3.698 7 O -0.466 6.466 8 C 0.011 3.989 9 H 0.173 0.827 10 C -0.146 4.146 11 C -0.196 4.196 12 C 0.303 3.697 13 O -0.467 6.467 14 N -0.361 5.361 15 C -0.012 4.012 16 C -0.031 4.031 17 H 0.078 0.922 18 N -0.302 5.302 19 C -0.068 4.068 20 C 0.227 3.773 21 O -0.506 6.506 22 N -0.212 5.212 23 C -0.462 4.462 24 H 0.099 0.901 25 C -0.215 4.215 26 N -0.563 5.563 27 Si 0.817 3.183 28 H -0.195 1.195 29 H -0.198 1.198 30 H -0.197 1.197 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.175 0.825 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.236 -1.212 -23.978 27.415 hybrid contribution 0.512 -0.260 1.724 1.817 sum -12.724 -1.472 -22.254 25.677 Atomic orbital electron populations 1.21876 0.92305 1.02469 1.03204 1.22325 0.97505 0.99977 0.92540 0.88168 1.22821 1.02797 0.79009 0.97159 1.48985 1.61854 1.06599 1.17000 1.21383 0.77812 0.81690 0.88882 1.90755 1.54511 1.32571 1.68735 1.21843 1.00120 0.87460 0.89433 0.82699 1.22827 0.88476 0.95644 1.07632 1.22452 0.98267 0.96017 1.02840 1.21572 0.86367 0.84798 0.76981 1.90727 1.84855 1.20412 1.50704 1.46048 1.14112 1.17853 1.58100 1.22291 0.98005 0.97473 0.83464 1.22520 0.92721 0.93152 0.94693 0.92168 1.60048 1.55224 1.06597 1.08314 1.21574 0.98026 0.98125 0.89108 1.20815 0.86038 0.87925 0.82529 1.90486 1.55212 1.33973 1.70943 1.41963 1.43489 1.27409 1.08342 1.19672 1.25095 1.09103 0.92290 0.90097 1.26070 0.99288 0.98620 0.97530 1.69679 1.44554 1.28764 1.13259 0.84915 0.78030 0.77802 0.77532 1.19469 1.19801 1.19695 0.93168 0.89335 0.92270 0.85775 0.89544 0.87266 0.84268 0.85421 0.88449 0.74675 0.91150 0.92439 0.82526 0.91431 0.88771 0.77096 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.90 71.98 0.64 -0.32 16 2 C -0.10 -1.12 3.33 -9.89 -0.03 -1.15 16 3 H 0.10 1.13 7.55 -2.39 -0.02 1.11 16 4 C 0.10 0.78 6.31 86.54 0.55 1.32 16 5 N -0.61 -9.46 3.32 -807.96 -2.68 -12.13 16 6 C 0.51 9.36 7.09 87.66 0.62 9.98 16 7 O -0.59 -17.59 16.84 -3.03 -0.05 -17.64 16 8 C 0.12 1.06 3.09 44.70 0.14 1.20 16 9 H 0.16 0.15 7.68 -2.39 -0.02 0.13 16 10 C -0.11 -0.36 6.33 31.73 0.20 -0.16 16 11 C -0.16 -1.70 6.86 30.67 0.21 -1.49 16 12 C 0.51 10.46 8.43 87.90 0.74 11.20 16 13 O -0.59 -17.87 18.03 -3.04 -0.05 -17.93 16 14 N -0.71 -10.82 5.46 -442.98 -2.42 -13.24 16 15 C 0.11 2.45 6.73 86.54 0.58 3.03 16 16 C 0.08 1.52 3.03 45.82 0.14 1.65 16 17 H 0.06 1.15 7.41 -2.39 -0.02 1.13 16 18 N -0.67 -18.06 5.91 -490.88 -2.90 -20.96 16 19 C 0.06 2.07 6.01 85.56 0.51 2.59 16 20 C 0.44 20.17 7.82 87.66 0.69 20.86 16 21 O -0.62 -32.90 15.78 -3.05 -0.05 -32.95 16 22 N -0.57 -29.09 5.29 -306.99 -1.62 -30.71 16 23 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 24 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 25 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 26 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 27 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 30 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 0.39 7.92 -2.39 -0.02 0.37 16 34 H 0.12 -0.09 6.67 -2.39 -0.02 -0.11 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.11 0.19 7.66 -2.38 -0.02 0.17 16 37 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.41 6.05 8.96 -92.71 -0.83 5.22 16 41 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 42 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 43 H 0.35 9.64 7.79 -89.70 -0.70 8.94 16 44 H 0.07 1.90 8.07 -2.39 -0.02 1.89 16 45 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 47 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -84.96 389.66 -2.43 -87.39 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -1.23 Total: 32.44 kcal Atomic # 6 Polarization: 24.27 SS G_CDS: 6.27 Total: 30.54 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -9.34 Total: -126.50 kcal Atomic # 8 Polarization: -68.36 SS G_CDS: -0.15 Total: -68.51 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -84.96 -2.43 -87.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216455497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.180 kcal (2) G-P(sol) polarization free energy of solvation -84.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds