Wall clock time and date at job start Tue Mar 31 2020 21:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36858 * 2 1 4 4 C 1.54378 * 110.41450 * 237.64773 * 2 1 3 5 5 H 1.09000 * 110.32341 * 336.36835 * 4 2 1 6 6 N 1.46507 * 110.32259 * 98.47221 * 4 2 1 7 7 C 1.34774 * 119.99703 * 205.00331 * 6 4 2 8 8 O 1.21279 * 120.00328 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99683 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.43081 * 298.91099 * 9 7 6 11 11 C 1.54631 * 110.48344 * 176.22873 * 9 7 6 12 12 C 1.54483 * 101.76305 * 266.11616 * 11 9 7 13 13 N 1.46766 * 105.47311 * 334.58525 * 12 11 9 14 14 C 1.34422 * 111.29924 * 17.01932 * 13 12 11 15 15 O 1.21287 * 124.94229 * 179.62726 * 14 13 12 16 16 C 1.54258 * 105.06304 * 217.36934 * 4 2 1 17 17 C 1.54382 * 105.06228 * 359.97438 * 16 4 2 18 18 N 1.48559 * 110.41220 * 122.47403 * 2 1 3 19 19 C 1.46899 * 111.00103 * 277.81941 * 18 2 1 20 20 C 1.50703 * 109.47163 * 169.99711 * 19 18 2 21 21 O 1.21297 * 120.00105 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00238 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00120 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00246 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00014 * 180.02562 * 23 22 20 26 26 N 1.31418 * 120.00202 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00115 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47422 * 59.99664 * 27 25 23 29 29 H 1.48501 * 109.47041 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46790 * 299.99428 * 27 25 23 31 31 H 1.09002 * 109.47153 * 182.34991 * 1 2 3 32 32 H 1.09001 * 109.46832 * 62.35182 * 1 2 3 33 33 H 1.09004 * 109.47261 * 302.35163 * 1 2 3 34 34 H 0.97003 * 119.99770 * 25.00503 * 6 4 2 35 35 H 1.09001 * 110.97137 * 24.23480 * 11 9 7 36 36 H 1.08999 * 110.96567 * 148.00248 * 11 9 7 37 37 H 1.08996 * 110.24829 * 215.59094 * 12 11 9 38 38 H 1.08998 * 110.24603 * 93.58278 * 12 11 9 39 39 H 0.96996 * 124.35427 * 197.03781 * 13 12 11 40 40 H 1.08994 * 110.32796 * 118.89484 * 16 4 2 41 41 H 1.09007 * 110.32578 * 241.10835 * 16 4 2 42 42 H 1.09001 * 110.41404 * 142.62920 * 17 16 4 43 43 H 1.09000 * 110.41284 * 264.95891 * 17 16 4 44 44 H 1.08993 * 109.47633 * 289.99770 * 19 18 2 45 45 H 1.09002 * 109.46977 * 49.99974 * 19 18 2 46 46 H 0.96997 * 119.99832 * 0.02562 * 22 20 19 47 47 H 0.96997 * 120.00115 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 1 1.3229 -1.4850 -1.5786 6 7 2.4356 0.1563 -2.2926 7 6 2.4425 -0.2600 -3.5744 8 8 2.1452 -1.4049 -3.8418 9 6 2.8208 0.6971 -4.6754 10 1 2.1284 1.5385 -4.7027 11 6 2.8469 -0.0305 -6.0396 12 6 4.3351 -0.4280 -6.1561 13 7 5.0654 0.5430 -5.3327 14 6 4.2402 1.1853 -4.4881 15 8 4.5837 2.0335 -3.6920 16 6 3.3178 -1.5181 -0.7070 17 6 3.4295 -1.1302 0.7831 18 7 2.0481 -0.7476 1.1746 19 6 2.0569 0.0988 2.3752 20 6 2.3502 -0.7496 3.5858 21 8 2.5344 -1.9419 3.4606 22 7 2.4090 -0.1833 4.8074 23 6 2.6764 -0.9550 5.9085 24 1 2.8396 -2.0167 5.7972 25 6 2.7364 -0.3713 7.1680 26 7 2.5374 0.9206 7.3037 27 14 3.1015 -1.4226 8.6683 28 1 4.4289 -2.0689 8.5088 29 1 3.1107 -0.5669 9.8820 30 1 2.0555 -2.4676 8.8068 31 1 -0.3633 -1.0268 0.0421 32 1 -0.3633 0.4769 -0.9103 33 1 -0.3634 0.5499 0.8682 34 1 2.6738 1.0720 -2.0787 35 1 2.2075 -0.9131 -6.0233 36 1 2.5588 0.6433 -6.8466 37 1 4.6625 -0.3643 -7.1938 38 1 4.4871 -1.4371 -5.7730 39 1 6.0206 0.7012 -5.3908 40 1 3.1862 -2.5952 -0.8093 41 1 4.2043 -1.1908 -1.2504 42 1 3.7694 -1.9814 1.3731 43 1 4.1094 -0.2873 0.9066 44 1 2.8251 0.8653 2.2740 45 1 1.0828 0.5739 2.4920 46 1 2.2621 0.7702 4.9075 47 1 2.5797 1.3282 8.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264713951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:39 Heat of formation + Delta-G solvation = -96.193581 kcal Electronic energy + Delta-G solvation = -29669.980615 eV Core-core repulsion = 25466.618225 eV Total energy + Delta-G solvation = -4203.362390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40156 -39.84800 -38.74136 -37.61874 -36.72807 -34.55587 -33.79458 -32.17289 -31.41490 -31.19817 -30.70677 -28.38823 -26.43578 -25.32173 -24.11568 -22.97674 -21.98170 -21.16801 -20.53039 -19.94266 -19.11106 -18.04060 -17.92437 -17.83031 -16.65706 -16.05501 -15.88861 -15.66156 -15.18285 -14.85268 -14.68437 -14.54687 -14.28595 -14.11879 -13.87910 -13.80210 -13.76157 -13.39978 -13.19650 -13.17437 -12.47346 -12.20487 -12.04351 -11.86758 -11.85080 -11.67028 -11.48535 -11.35549 -11.23418 -11.08583 -10.78469 -10.61475 -10.50379 -10.41895 -10.18389 -10.14306 -9.62193 -9.45542 -9.25609 -8.51773 -8.01728 -7.91725 -6.38319 -3.78992 1.86259 2.27087 2.77274 2.94894 3.22429 3.27684 3.32269 3.75294 3.88223 3.94030 4.02236 4.22576 4.31064 4.41997 4.53064 4.62251 4.71608 4.93601 5.02409 5.05100 5.19865 5.25961 5.28340 5.34840 5.37212 5.46055 5.51074 5.63938 5.70101 5.80328 5.90033 5.92100 5.97464 6.12620 6.20463 6.24283 6.30901 6.35848 6.42536 6.44698 7.09806 7.15538 7.23971 7.58149 7.67962 7.86303 8.09477 8.65727 9.21724 9.58243 10.10582 10.79511 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.002102 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.249081 B =13316.732488 C =13524.149187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 H 0.055 0.945 4 C 0.145 3.855 5 H 0.105 0.895 6 N -0.714 5.714 7 C 0.532 3.468 8 O -0.528 6.528 9 C -0.153 4.153 10 H 0.134 0.866 11 C -0.120 4.120 12 C 0.098 3.902 13 N -0.727 5.727 14 C 0.529 3.471 15 O -0.521 6.521 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.474 5.474 19 C 0.034 3.966 20 C 0.447 3.553 21 O -0.576 6.576 22 N -0.566 5.566 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.405 0.595 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.414 0.586 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 3.348 -28.362 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 H 0.073 0.927 4 C 0.040 3.960 5 H 0.123 0.877 6 N -0.365 5.365 7 C 0.316 3.684 8 O -0.404 6.404 9 C -0.177 4.177 10 H 0.152 0.848 11 C -0.158 4.158 12 C -0.026 4.026 13 N -0.382 5.382 14 C 0.313 3.687 15 O -0.396 6.396 16 C -0.171 4.171 17 C -0.090 4.090 18 N -0.199 5.199 19 C -0.097 4.097 20 C 0.232 3.768 21 O -0.459 6.459 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.758 3.242 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.254 0.746 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.078 1.786 -27.867 27.925 hybrid contribution 1.177 1.544 0.822 2.109 sum 1.255 3.330 -27.046 27.279 Atomic orbital electron populations 1.21712 0.93109 1.03129 1.01359 1.22883 0.96839 0.95805 0.90383 0.92739 1.21829 0.97334 0.91075 0.85741 0.87735 1.46171 1.68788 1.15646 1.05911 1.19682 0.77536 0.87959 0.83211 1.90719 1.48205 1.18650 1.82815 1.22189 0.97607 1.01095 0.96847 0.84801 1.22622 0.96700 1.02489 0.93959 1.22176 0.91667 0.92987 0.95815 1.46166 1.11317 1.40843 1.39921 1.20323 0.87571 0.80715 0.80047 1.90813 1.80528 1.31724 1.36557 1.22731 0.97164 1.01431 0.95735 1.23161 0.89604 1.01473 0.94778 1.65138 1.18694 1.35447 1.00573 1.22077 1.01944 0.94579 0.91134 1.19669 0.84546 0.88716 0.83901 1.90514 1.54499 1.15350 1.85549 1.41849 1.62439 1.10859 1.05194 1.19637 1.44859 0.93974 0.84225 0.88005 1.25253 0.97547 0.96079 0.99136 1.69606 1.50000 1.09873 1.25005 0.85923 0.79166 0.79188 0.79965 1.19963 1.21023 1.19899 0.91267 0.92521 0.92142 0.75901 0.87005 0.89132 0.89691 0.90291 0.74644 0.90147 0.91374 0.88301 0.94265 0.93131 0.89242 0.77549 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.30 37.16 0.35 -1.24 16 2 C 0.05 0.65 2.58 -66.07 -0.17 0.48 16 3 H 0.05 0.65 7.61 -51.93 -0.40 0.26 16 4 C 0.14 1.78 2.96 -66.55 -0.20 1.59 16 5 H 0.10 1.39 7.27 -51.93 -0.38 1.01 16 6 N -0.71 -7.43 4.95 -52.46 -0.26 -7.69 16 7 C 0.53 5.45 7.19 -10.98 -0.08 5.37 16 8 O -0.53 -6.79 15.11 5.56 0.08 -6.71 16 9 C -0.15 -1.10 3.33 -91.78 -0.31 -1.41 16 10 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 11 C -0.12 -0.58 6.53 -25.10 -0.16 -0.75 16 12 C 0.10 0.44 7.78 -3.12 -0.02 0.41 16 13 N -0.73 -4.63 6.24 -59.20 -0.37 -5.00 16 14 C 0.53 4.79 7.65 -10.86 -0.08 4.71 16 15 O -0.52 -6.58 17.85 5.55 0.10 -6.48 16 16 C -0.13 -1.79 6.79 -25.35 -0.17 -1.96 16 17 C 0.04 0.61 5.92 -2.16 -0.01 0.60 16 18 N -0.47 -7.94 4.66 -223.54 -1.04 -8.98 16 19 C 0.03 0.62 5.27 -4.97 -0.03 0.60 16 20 C 0.45 10.68 7.63 -10.98 -0.08 10.59 16 21 O -0.58 -15.74 14.80 5.54 0.08 -15.66 16 22 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 27 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 30 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16 34 H 0.41 3.91 8.16 -40.82 -0.33 3.57 16 35 H 0.11 0.65 6.91 -51.93 -0.36 0.30 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.41 2.08 8.96 -40.82 -0.37 1.71 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 42 H 0.10 1.88 7.24 -51.93 -0.38 1.50 16 43 H 0.04 0.62 7.76 -51.93 -0.40 0.21 16 44 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 45 H 0.09 1.46 7.23 -51.93 -0.38 1.09 16 46 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 47 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -34.94 385.54 -8.14 -43.09 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -6.98 Total: 13.05 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -1.21 Total: 10.95 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.00 Total: -60.35 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: 0.27 Total: -28.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.94 -8.14 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264713951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.107 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds