Wall clock time and date at job start Tue Mar 31 2020 21:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.36858 * 2 1 4 4 C 1.54378 * 110.41450 * 237.64773 * 2 1 3 5 5 H 1.09000 * 110.32341 * 336.36835 * 4 2 1 6 6 N 1.46507 * 110.32259 * 98.47221 * 4 2 1 7 7 C 1.34774 * 119.99703 * 205.00331 * 6 4 2 8 8 O 1.21279 * 120.00328 * 359.97438 * 7 6 4 9 9 C 1.50708 * 119.99683 * 180.02562 * 7 6 4 10 10 H 1.09000 * 110.43081 * 298.91099 * 9 7 6 11 11 C 1.54631 * 110.48344 * 176.22873 * 9 7 6 12 12 C 1.54483 * 101.76305 * 266.11616 * 11 9 7 13 13 N 1.46766 * 105.47311 * 334.58525 * 12 11 9 14 14 C 1.34422 * 111.29924 * 17.01932 * 13 12 11 15 15 O 1.21287 * 124.94229 * 179.62726 * 14 13 12 16 16 C 1.54258 * 105.06304 * 217.36934 * 4 2 1 17 17 C 1.54382 * 105.06228 * 359.97438 * 16 4 2 18 18 N 1.48559 * 110.41220 * 122.47403 * 2 1 3 19 19 C 1.46899 * 111.00103 * 277.81941 * 18 2 1 20 20 C 1.50703 * 109.47163 * 169.99711 * 19 18 2 21 21 O 1.21297 * 120.00105 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00238 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00120 * 180.02562 * 22 20 19 24 24 H 1.07998 * 120.00246 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00014 * 180.02562 * 23 22 20 26 26 N 1.31418 * 120.00202 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00115 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47422 * 59.99664 * 27 25 23 29 29 H 1.48501 * 109.47041 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46790 * 299.99428 * 27 25 23 31 31 H 1.09002 * 109.47153 * 182.34991 * 1 2 3 32 32 H 1.09001 * 109.46832 * 62.35182 * 1 2 3 33 33 H 1.09004 * 109.47261 * 302.35163 * 1 2 3 34 34 H 0.97003 * 119.99770 * 25.00503 * 6 4 2 35 35 H 1.09001 * 110.97137 * 24.23480 * 11 9 7 36 36 H 1.08999 * 110.96567 * 148.00248 * 11 9 7 37 37 H 1.08996 * 110.24829 * 215.59094 * 12 11 9 38 38 H 1.08998 * 110.24603 * 93.58278 * 12 11 9 39 39 H 0.96996 * 124.35427 * 197.03781 * 13 12 11 40 40 H 1.08994 * 110.32796 * 118.89484 * 16 4 2 41 41 H 1.09007 * 110.32578 * 241.10835 * 16 4 2 42 42 H 1.09001 * 110.41404 * 142.62920 * 17 16 4 43 43 H 1.09000 * 110.41284 * 264.95891 * 17 16 4 44 44 H 1.08993 * 109.47633 * 289.99770 * 19 18 2 45 45 H 1.09002 * 109.46977 * 49.99974 * 19 18 2 46 46 H 0.96997 * 119.99832 * 0.02562 * 22 20 19 47 47 H 0.96997 * 120.00115 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 1 1.3229 -1.4850 -1.5786 6 7 2.4356 0.1563 -2.2926 7 6 2.4425 -0.2600 -3.5744 8 8 2.1452 -1.4049 -3.8418 9 6 2.8208 0.6971 -4.6754 10 1 2.1284 1.5385 -4.7027 11 6 2.8469 -0.0305 -6.0396 12 6 4.3351 -0.4280 -6.1561 13 7 5.0654 0.5430 -5.3327 14 6 4.2402 1.1853 -4.4881 15 8 4.5837 2.0335 -3.6920 16 6 3.3178 -1.5181 -0.7070 17 6 3.4295 -1.1302 0.7831 18 7 2.0481 -0.7476 1.1746 19 6 2.0569 0.0988 2.3752 20 6 2.3502 -0.7496 3.5858 21 8 2.5344 -1.9419 3.4606 22 7 2.4090 -0.1833 4.8074 23 6 2.6764 -0.9550 5.9085 24 1 2.8396 -2.0167 5.7972 25 6 2.7364 -0.3713 7.1680 26 7 2.5374 0.9206 7.3037 27 14 3.1015 -1.4226 8.6683 28 1 4.4289 -2.0689 8.5088 29 1 3.1107 -0.5669 9.8820 30 1 2.0555 -2.4676 8.8068 31 1 -0.3633 -1.0268 0.0421 32 1 -0.3633 0.4769 -0.9103 33 1 -0.3634 0.5499 0.8682 34 1 2.6738 1.0720 -2.0787 35 1 2.2075 -0.9131 -6.0233 36 1 2.5588 0.6433 -6.8466 37 1 4.6625 -0.3643 -7.1938 38 1 4.4871 -1.4371 -5.7730 39 1 6.0206 0.7012 -5.3908 40 1 3.1862 -2.5952 -0.8093 41 1 4.2043 -1.1908 -1.2504 42 1 3.7694 -1.9814 1.3731 43 1 4.1094 -0.2873 0.9066 44 1 2.8251 0.8653 2.2740 45 1 1.0828 0.5739 2.4920 46 1 2.2621 0.7702 4.9075 47 1 2.5797 1.3282 8.1829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264713951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:38 Heat of formation + Delta-G solvation = -126.057941 kcal Electronic energy + Delta-G solvation = -29671.275631 eV Core-core repulsion = 25466.618225 eV Total energy + Delta-G solvation = -4204.657406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10091 -40.94905 -39.99917 -39.12547 -37.39960 -36.02270 -35.42246 -33.32277 -32.84965 -32.42818 -31.81674 -29.01166 -28.01112 -26.37439 -25.89211 -23.68325 -22.58944 -22.27868 -21.57313 -21.03639 -20.66079 -19.87094 -18.75381 -18.52893 -17.84461 -17.52679 -16.75890 -16.59148 -16.50110 -16.31556 -16.02555 -15.75654 -15.42240 -15.23580 -15.18264 -14.73413 -14.60189 -14.48351 -14.43318 -13.93867 -13.74800 -13.62086 -13.46959 -12.98738 -12.88772 -12.82971 -12.52112 -12.46191 -12.41376 -12.37416 -12.28113 -12.13317 -12.09549 -11.72891 -11.48058 -11.26212 -10.95606 -10.36077 -10.18164 -10.14700 -10.00578 -9.44360 -8.46095 -5.94685 1.14464 1.39372 1.40786 1.51122 1.52072 2.00468 2.06160 2.29036 2.38344 2.80733 3.19865 3.21806 3.31372 3.37622 3.41792 3.68521 3.73803 3.99078 4.02543 4.10885 4.20086 4.22976 4.30929 4.38049 4.38888 4.50937 4.51686 4.64507 4.75970 4.79891 4.85358 4.95883 4.97995 5.04925 5.07519 5.13308 5.34053 5.34358 5.40973 5.70104 5.79530 5.90418 5.90781 6.06832 6.37076 6.61313 7.03778 7.10748 7.13509 7.56969 8.13355 8.71171 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.002102 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.249081 B =13316.732488 C =13524.149187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 H 0.073 0.927 4 C 0.155 3.845 5 H 0.096 0.904 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.556 6.556 9 C -0.147 4.147 10 H 0.157 0.843 11 C -0.114 4.114 12 C 0.095 3.905 13 N -0.718 5.718 14 C 0.522 3.478 15 O -0.563 6.563 16 C -0.122 4.122 17 C 0.040 3.960 18 N -0.496 5.496 19 C 0.048 3.952 20 C 0.443 3.557 21 O -0.615 6.615 22 N -0.575 5.575 23 C -0.332 4.332 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.992 3.008 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.272 1.272 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.420 0.580 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.113 0.887 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 4.626 -30.188 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 H 0.091 0.909 4 C 0.050 3.950 5 H 0.114 0.886 6 N -0.360 5.360 7 C 0.317 3.683 8 O -0.434 6.434 9 C -0.171 4.171 10 H 0.174 0.826 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.373 5.373 14 C 0.307 3.693 15 O -0.442 6.442 16 C -0.162 4.162 17 C -0.088 4.088 18 N -0.221 5.221 19 C -0.084 4.084 20 C 0.230 3.770 21 O -0.501 6.501 22 N -0.213 5.213 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.816 3.184 28 H -0.198 1.198 29 H -0.194 1.194 30 H -0.197 1.197 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.260 0.740 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.130 0.870 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.295 3.082 -29.741 29.901 hybrid contribution 1.314 1.099 1.305 2.153 sum 1.019 4.180 -28.435 28.759 Atomic orbital electron populations 1.21712 0.91971 1.02603 1.02697 1.22942 0.97602 0.96191 0.88608 0.90910 1.21564 0.96193 0.91142 0.86147 0.88560 1.46097 1.68679 1.15548 1.05701 1.20189 0.76616 0.88029 0.83512 1.90714 1.49394 1.20025 1.83230 1.22233 0.96960 1.01235 0.96707 0.82584 1.22698 0.96677 1.02502 0.93334 1.22361 0.91454 0.91901 0.97149 1.46257 1.11694 1.40158 1.39188 1.20617 0.88492 0.80383 0.79788 1.90789 1.81309 1.33759 1.38387 1.22630 0.98278 1.01184 0.94063 1.23032 0.89730 1.00267 0.95804 1.65060 1.18951 1.36569 1.01550 1.21922 1.03677 0.93756 0.89025 1.20714 0.82518 0.88833 0.84913 1.90488 1.55749 1.17529 1.86338 1.41916 1.63045 1.10882 1.05458 1.19599 1.47156 0.93450 0.85930 0.90437 1.26032 0.96700 0.97356 1.01264 1.69667 1.49726 1.10807 1.25975 0.85000 0.78825 0.77781 0.76794 1.19803 1.19427 1.19721 0.92637 0.90027 0.92037 0.75147 0.87858 0.86178 0.86446 0.91227 0.73982 0.90994 0.90738 0.91980 0.93766 0.91149 0.86953 0.77043 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.30 71.98 0.67 -2.17 16 2 C 0.06 1.33 2.58 45.06 0.12 1.45 16 3 H 0.07 1.54 7.61 -2.38 -0.02 1.52 16 4 C 0.16 3.67 2.96 45.88 0.14 3.81 16 5 H 0.10 2.50 7.27 -2.39 -0.02 2.48 16 6 N -0.71 -13.64 4.95 -438.28 -2.17 -15.81 16 7 C 0.53 10.06 7.19 87.66 0.63 10.69 16 8 O -0.56 -13.74 15.11 -3.03 -0.05 -13.78 16 9 C -0.15 -1.79 3.33 -11.55 -0.04 -1.83 16 10 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 11 C -0.11 -0.79 6.53 31.65 0.21 -0.58 16 12 C 0.09 0.61 7.78 86.83 0.68 1.28 16 13 N -0.72 -7.75 6.24 -459.80 -2.87 -10.62 16 14 C 0.52 8.59 7.65 87.90 0.67 9.27 16 15 O -0.56 -13.70 17.85 -3.05 -0.05 -13.75 16 16 C -0.12 -3.34 6.79 31.49 0.21 -3.12 16 17 C 0.04 1.32 5.92 86.45 0.51 1.83 16 18 N -0.50 -16.49 4.66 -861.16 -4.01 -20.51 16 19 C 0.05 1.69 5.27 85.56 0.45 2.14 16 20 C 0.44 21.64 7.63 87.66 0.67 22.31 16 21 O -0.62 -34.99 14.80 -3.08 -0.05 -35.03 16 22 N -0.58 -30.13 5.29 -306.98 -1.62 -31.76 16 23 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 24 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 25 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 26 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 27 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 30 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.31 7.39 -2.38 -0.02 1.29 16 34 H 0.41 7.14 8.16 -92.71 -0.76 6.38 16 35 H 0.10 0.98 6.91 -2.39 -0.02 0.97 16 36 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.42 3.52 8.96 -92.71 -0.83 2.69 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 1.92 7.95 -2.38 -0.02 1.90 16 42 H 0.06 2.50 7.24 -2.39 -0.02 2.48 16 43 H 0.04 1.40 7.76 -2.39 -0.02 1.38 16 44 H 0.07 2.24 7.77 -2.39 -0.02 2.22 16 45 H 0.11 3.48 7.23 -2.39 -0.02 3.46 16 46 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 47 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -77.80 385.54 -3.61 -81.41 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -1.29 Total: 37.78 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 6.19 Total: 26.41 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -10.39 Total: -128.75 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -0.15 Total: -62.57 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -77.80 -3.61 -81.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264713951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.650 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds