Wall clock time and date at job start Tue Mar 31 2020 22:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 N 1.46502 * 109.46705 * 119.99880 * 2 1 3 5 5 C 1.36937 * 119.99925 * 274.99588 * 4 2 1 6 6 H 1.08001 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99727 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99781 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00189 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47360 * 89.99787 * 9 7 5 11 11 H 1.48506 * 109.46862 * 209.99615 * 9 7 5 12 12 H 1.48503 * 109.47052 * 329.99459 * 9 7 5 13 13 C 1.52995 * 109.47426 * 239.99809 * 2 1 3 14 14 H 1.09002 * 109.58673 * 53.86557 * 13 2 1 15 15 C 1.53188 * 109.58829 * 293.58215 * 13 2 1 16 16 C 1.53078 * 109.29671 * 185.71727 * 15 13 2 17 17 C 1.53039 * 109.65569 * 61.15579 * 16 15 13 18 18 C 1.53196 * 109.31071 * 298.69807 * 17 16 15 19 19 N 1.46922 * 108.77402 * 54.63759 * 18 17 16 20 20 C 1.34780 * 120.62785 * 126.41438 * 19 18 17 21 21 O 1.21285 * 119.99734 * 184.64798 * 20 19 18 22 22 C 1.50697 * 120.00220 * 4.64887 * 20 19 18 23 23 N 1.46501 * 109.46865 * 180.02562 * 22 20 19 24 24 C 1.34772 * 124.17563 * 269.71623 * 23 22 20 25 25 O 1.21230 * 127.15573 * 0.02562 * 24 23 22 26 26 C 1.51585 * 105.68305 * 179.97438 * 24 23 22 27 27 N 1.47308 * 103.59565 * 0.32574 * 26 24 23 28 28 C 1.33794 * 124.18110 * 90.02616 * 23 22 20 29 29 O 1.21535 * 123.76875 * 359.95786 * 28 23 22 30 30 H 1.09005 * 109.47021 * 65.03151 * 1 2 3 31 31 H 1.08999 * 109.46840 * 185.02536 * 1 2 3 32 32 H 1.08998 * 109.47594 * 305.02722 * 1 2 3 33 33 H 0.97001 * 120.00242 * 95.28112 * 4 2 1 34 34 H 0.96990 * 119.99862 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.50207 * 305.53166 * 15 13 2 36 36 H 1.09004 * 109.50190 * 65.62359 * 15 13 2 37 37 H 1.08992 * 109.34764 * 301.12781 * 16 15 13 38 38 H 1.09005 * 109.44273 * 181.23715 * 16 15 13 39 39 H 1.08998 * 109.49492 * 178.74880 * 17 16 15 40 40 H 1.08998 * 109.52822 * 58.66345 * 17 16 15 41 41 H 1.09003 * 109.58439 * 294.84968 * 18 17 16 42 42 H 1.08998 * 109.58554 * 174.42789 * 18 17 16 43 43 H 1.09003 * 109.46809 * 299.99415 * 22 20 19 44 44 H 1.08997 * 109.47286 * 59.99999 * 22 20 19 45 45 H 1.08997 * 110.76388 * 241.71537 * 26 24 23 46 46 H 1.09000 * 110.56155 * 118.83616 * 26 24 23 47 47 H 0.96997 * 126.69422 * 179.76661 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6122 -0.6617 3.5091 8 7 2.7375 -0.0052 4.6430 9 14 3.0576 -2.4738 3.4249 10 1 4.4903 -2.6150 3.0611 11 1 2.8185 -3.1042 4.7481 12 1 2.2180 -3.1428 2.3989 13 6 2.0401 -0.7213 -1.2491 14 1 1.5910 -0.2762 -2.1371 15 6 1.6670 -2.2051 -1.1738 16 6 2.3014 -2.9468 -2.3530 17 6 3.8251 -2.8243 -2.2785 18 6 4.2195 -1.3467 -2.3682 19 7 3.5025 -0.6017 -1.3243 20 6 4.1736 0.1769 -0.4526 21 8 3.5813 0.7199 0.4559 22 6 5.6598 0.3730 -0.6068 23 7 6.1490 1.2538 0.4568 24 6 6.2225 2.5956 0.3546 25 8 5.9078 3.2757 -0.5983 26 6 6.7793 3.0775 1.6796 27 7 6.9806 1.8342 2.4434 28 6 6.5836 0.8250 1.6473 29 8 6.6174 -0.3455 1.9726 30 1 -0.3633 0.4338 -0.9317 31 1 -0.3633 -1.0237 0.0900 32 1 -0.3634 0.5898 0.8415 33 1 2.2528 -1.6308 1.1517 34 1 3.0614 -0.4622 5.4348 35 1 2.0377 -2.6265 -0.2394 36 1 0.5828 -2.3103 -1.2158 37 1 1.9472 -2.5103 -3.2868 38 1 2.0194 -3.9990 -2.3140 39 1 4.2749 -3.3718 -3.1067 40 1 4.1781 -3.2384 -1.3341 41 1 3.9482 -0.9549 -3.3485 42 1 5.2942 -1.2455 -2.2166 43 1 6.1625 -0.5918 -0.5390 44 1 5.8681 0.8240 -1.5770 45 1 6.0651 3.7271 2.1855 46 1 7.7275 3.5942 1.5311 47 1 7.3310 1.7579 3.3446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:51 Heat of formation + Delta-G solvation = -7.654582 kcal Electronic energy + Delta-G solvation = -32919.158317 eV Core-core repulsion = 28719.635266 eV Total energy + Delta-G solvation = -4199.523051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09294 -40.17235 -38.30954 -37.05817 -35.78101 -35.53012 -34.17629 -32.60651 -32.09845 -29.98935 -28.62804 -28.42974 -27.31263 -24.80599 -23.93385 -22.89293 -22.64844 -21.31640 -20.63752 -19.66070 -18.66125 -17.78871 -17.44018 -17.02077 -16.53871 -16.05979 -15.75646 -15.19611 -15.00988 -14.90354 -14.56065 -14.40449 -13.91341 -13.81011 -13.76908 -13.75153 -13.45655 -13.23933 -13.00455 -12.81194 -12.33524 -12.23841 -12.16719 -11.73286 -11.49633 -11.36046 -10.93910 -10.75779 -10.73237 -10.63772 -10.58483 -10.49341 -10.11652 -10.04467 -9.95025 -9.69929 -9.24761 -9.23119 -8.68500 -8.29833 -7.99172 -6.82830 -5.44210 -2.72024 1.84117 2.28077 3.13787 3.25380 3.36694 3.50757 3.54061 3.60373 3.69289 4.17421 4.67583 4.79074 4.84132 4.89347 4.94263 5.02507 5.07383 5.18804 5.23013 5.26505 5.38641 5.39912 5.55674 5.61197 5.63571 5.74737 5.81752 5.84891 5.89609 5.98398 6.04927 6.14078 6.19388 6.36138 6.42611 6.47119 6.70472 6.86711 7.02156 7.02783 7.26514 7.31951 7.51439 7.82894 8.34004 8.42540 8.72303 8.84269 9.54545 10.27765 10.48351 11.76294 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.006876 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.739285 B = 4071.034989 C = 5422.315621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.177 3.823 3 H 0.087 0.913 4 N -0.729 5.729 5 C -0.180 4.180 6 H 0.084 0.916 7 C -0.005 4.005 8 N -0.947 5.947 9 Si 0.870 3.130 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.286 1.286 13 C 0.145 3.855 14 H 0.068 0.932 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.111 3.889 19 N -0.613 5.613 20 C 0.473 3.527 21 O -0.429 6.429 22 C 0.103 3.897 23 N -0.556 5.556 24 C 0.530 3.470 25 O -0.479 6.479 26 C 0.068 3.932 27 N -0.726 5.726 28 C 0.710 3.290 29 O -0.529 6.529 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.354 0.646 34 H 0.250 0.750 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.292 1.347 -15.984 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.067 3.933 3 H 0.104 0.896 4 N -0.372 5.372 5 C -0.310 4.310 6 H 0.101 0.899 7 C -0.198 4.198 8 N -0.599 5.599 9 Si 0.702 3.298 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.213 1.213 13 C 0.042 3.958 14 H 0.086 0.914 15 C -0.174 4.174 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.013 4.013 19 N -0.351 5.351 20 C 0.256 3.744 21 O -0.297 6.297 22 C -0.023 4.023 23 N -0.302 5.302 24 C 0.318 3.682 25 O -0.350 6.350 26 C -0.060 4.060 27 N -0.391 5.391 28 C 0.410 3.590 29 O -0.401 6.401 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 7.797 1.534 -15.695 17.592 hybrid contribution 0.477 -1.651 0.474 1.782 sum 8.275 -0.117 -15.221 17.325 Atomic orbital electron populations 1.22547 0.99674 1.00855 0.99842 1.20630 0.90371 0.97854 0.84412 0.89599 1.42777 1.79022 1.08412 1.07016 1.18849 1.32846 0.94717 0.84627 0.89857 1.24459 1.02921 0.96475 0.95962 1.69678 1.55226 1.34810 1.00139 0.86741 0.78826 0.88281 0.75909 1.20884 1.22557 1.21301 1.21636 0.78872 0.95618 0.99707 0.91442 1.22023 1.00842 0.95622 0.98864 1.21503 0.94960 1.00317 0.98649 1.21927 0.96888 0.96175 1.02555 1.21636 0.96510 0.91781 0.91369 1.47855 1.07000 1.47665 1.32624 1.20600 0.88921 0.82007 0.82883 1.91103 1.66236 1.44928 1.27411 1.21469 0.94807 0.95947 0.90057 1.45742 1.59224 1.09065 1.16167 1.20841 0.76340 0.81776 0.89267 1.90775 1.47482 1.60618 1.36130 1.22370 1.03896 0.89578 0.90183 1.45250 1.69855 1.05449 1.18517 1.15696 0.77602 0.85549 0.80143 1.91047 1.58276 1.15702 1.75069 0.94635 0.93743 0.92442 0.81186 0.93948 0.91137 0.90741 0.92052 0.92087 0.91105 0.91390 0.91598 0.90498 0.86802 0.86829 0.85826 0.86405 0.71481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.16 37.16 0.34 -2.76 16 2 C 0.18 3.59 1.88 -67.93 -0.13 3.46 16 3 H 0.09 1.97 5.90 -52.21 -0.31 1.66 16 4 N -0.73 -18.01 3.42 -53.43 -0.18 -18.19 16 5 C -0.18 -5.33 8.47 -15.06 -0.13 -5.46 16 6 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 7 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 8 N -0.95 -31.46 13.97 55.49 0.78 -30.69 16 9 Si 0.87 24.50 27.73 -169.99 -4.71 19.79 16 10 H -0.28 -8.27 7.11 56.52 0.40 -7.86 16 11 H -0.30 -8.51 7.11 56.52 0.40 -8.11 16 12 H -0.29 -7.58 6.52 56.52 0.37 -7.21 16 13 C 0.15 2.32 2.71 -67.61 -0.18 2.13 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 15 C -0.13 -2.00 4.88 -26.59 -0.13 -2.13 16 16 C -0.12 -1.32 5.88 -26.67 -0.16 -1.47 16 17 C -0.14 -1.47 6.08 -26.61 -0.16 -1.63 16 18 C 0.11 1.20 6.33 -3.71 -0.02 1.18 16 19 N -0.61 -9.43 2.97 -165.23 -0.49 -9.92 16 20 C 0.47 8.67 7.45 -10.99 -0.08 8.59 16 21 O -0.43 -9.91 9.18 5.55 0.05 -9.86 16 22 C 0.10 1.54 4.57 -5.20 -0.02 1.51 16 23 N -0.56 -9.11 2.09 -122.02 -0.26 -9.37 16 24 C 0.53 7.83 8.32 -10.55 -0.09 7.74 16 25 O -0.48 -7.89 17.75 5.60 0.10 -7.79 16 26 C 0.07 0.74 7.97 -4.32 -0.03 0.71 16 27 N -0.73 -10.04 6.58 -65.74 -0.43 -10.47 16 28 C 0.71 13.00 8.62 -88.02 -0.76 12.24 16 29 O -0.53 -12.09 17.48 5.34 0.09 -12.00 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.79 7.00 -51.93 -0.36 0.43 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.35 8.90 3.49 -40.82 -0.14 8.76 16 34 H 0.25 8.08 8.31 -40.82 -0.34 7.74 16 35 H 0.07 1.29 6.04 -51.93 -0.31 0.98 16 36 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.70 5.96 -51.93 -0.31 0.39 16 43 H 0.11 1.58 7.21 -51.93 -0.37 1.20 16 44 H 0.11 1.32 7.96 -51.93 -0.41 0.91 16 45 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.44 5.21 8.96 -40.82 -0.37 4.84 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -40.65 367.09 -7.95 -48.61 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.77 Total: 10.52 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: -1.65 Total: 23.84 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -0.59 Total: -78.63 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: 0.24 Total: -29.65 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -4.71 Total: 19.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.65 -7.95 -48.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.952 kcal (2) G-P(sol) polarization free energy of solvation -40.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds