Wall clock time and date at job start Tue Mar 31 2020 22:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 N 1.46502 * 109.46705 * 119.99880 * 2 1 3 5 5 C 1.36937 * 119.99925 * 274.99588 * 4 2 1 6 6 H 1.08001 * 120.00142 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99727 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99781 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00189 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47360 * 89.99787 * 9 7 5 11 11 H 1.48506 * 109.46862 * 209.99615 * 9 7 5 12 12 H 1.48503 * 109.47052 * 329.99459 * 9 7 5 13 13 C 1.52995 * 109.47426 * 239.99809 * 2 1 3 14 14 H 1.09002 * 109.58673 * 53.86557 * 13 2 1 15 15 C 1.53188 * 109.58829 * 293.58215 * 13 2 1 16 16 C 1.53078 * 109.29671 * 185.71727 * 15 13 2 17 17 C 1.53039 * 109.65569 * 61.15579 * 16 15 13 18 18 C 1.53196 * 109.31071 * 298.69807 * 17 16 15 19 19 N 1.46922 * 108.77402 * 54.63759 * 18 17 16 20 20 C 1.34780 * 120.62785 * 126.41438 * 19 18 17 21 21 O 1.21285 * 119.99734 * 184.64798 * 20 19 18 22 22 C 1.50697 * 120.00220 * 4.64887 * 20 19 18 23 23 N 1.46501 * 109.46865 * 180.02562 * 22 20 19 24 24 C 1.34772 * 124.17563 * 269.71623 * 23 22 20 25 25 O 1.21230 * 127.15573 * 0.02562 * 24 23 22 26 26 C 1.51585 * 105.68305 * 179.97438 * 24 23 22 27 27 N 1.47308 * 103.59565 * 0.32574 * 26 24 23 28 28 C 1.33794 * 124.18110 * 90.02616 * 23 22 20 29 29 O 1.21535 * 123.76875 * 359.95786 * 28 23 22 30 30 H 1.09005 * 109.47021 * 65.03151 * 1 2 3 31 31 H 1.08999 * 109.46840 * 185.02536 * 1 2 3 32 32 H 1.08998 * 109.47594 * 305.02722 * 1 2 3 33 33 H 0.97001 * 120.00242 * 95.28112 * 4 2 1 34 34 H 0.96990 * 119.99862 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.50207 * 305.53166 * 15 13 2 36 36 H 1.09004 * 109.50190 * 65.62359 * 15 13 2 37 37 H 1.08992 * 109.34764 * 301.12781 * 16 15 13 38 38 H 1.09005 * 109.44273 * 181.23715 * 16 15 13 39 39 H 1.08998 * 109.49492 * 178.74880 * 17 16 15 40 40 H 1.08998 * 109.52822 * 58.66345 * 17 16 15 41 41 H 1.09003 * 109.58439 * 294.84968 * 18 17 16 42 42 H 1.08998 * 109.58554 * 174.42789 * 18 17 16 43 43 H 1.09003 * 109.46809 * 299.99415 * 22 20 19 44 44 H 1.08997 * 109.47286 * 59.99999 * 22 20 19 45 45 H 1.08997 * 110.76388 * 241.71537 * 26 24 23 46 46 H 1.09000 * 110.56155 * 118.83616 * 26 24 23 47 47 H 0.96997 * 126.69422 * 179.76661 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6122 -0.6617 3.5091 8 7 2.7375 -0.0052 4.6430 9 14 3.0576 -2.4738 3.4249 10 1 4.4903 -2.6150 3.0611 11 1 2.8185 -3.1042 4.7481 12 1 2.2180 -3.1428 2.3989 13 6 2.0401 -0.7213 -1.2491 14 1 1.5910 -0.2762 -2.1371 15 6 1.6670 -2.2051 -1.1738 16 6 2.3014 -2.9468 -2.3530 17 6 3.8251 -2.8243 -2.2785 18 6 4.2195 -1.3467 -2.3682 19 7 3.5025 -0.6017 -1.3243 20 6 4.1736 0.1769 -0.4526 21 8 3.5813 0.7199 0.4559 22 6 5.6598 0.3730 -0.6068 23 7 6.1490 1.2538 0.4568 24 6 6.2225 2.5956 0.3546 25 8 5.9078 3.2757 -0.5983 26 6 6.7793 3.0775 1.6796 27 7 6.9806 1.8342 2.4434 28 6 6.5836 0.8250 1.6473 29 8 6.6174 -0.3455 1.9726 30 1 -0.3633 0.4338 -0.9317 31 1 -0.3633 -1.0237 0.0900 32 1 -0.3634 0.5898 0.8415 33 1 2.2528 -1.6308 1.1517 34 1 3.0614 -0.4622 5.4348 35 1 2.0377 -2.6265 -0.2394 36 1 0.5828 -2.3103 -1.2158 37 1 1.9472 -2.5103 -3.2868 38 1 2.0194 -3.9990 -2.3140 39 1 4.2749 -3.3718 -3.1067 40 1 4.1781 -3.2384 -1.3341 41 1 3.9482 -0.9549 -3.3485 42 1 5.2942 -1.2455 -2.2166 43 1 6.1625 -0.5918 -0.5390 44 1 5.8681 0.8240 -1.5770 45 1 6.0651 3.7271 2.1855 46 1 7.7275 3.5942 1.5311 47 1 7.3310 1.7579 3.3446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265091740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:50 Heat of formation + Delta-G solvation = -40.373512 kcal Electronic energy + Delta-G solvation = -32920.577116 eV Core-core repulsion = 28719.635266 eV Total energy + Delta-G solvation = -4200.941850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33435 -41.48344 -39.62285 -38.34812 -37.16154 -37.11640 -35.48342 -34.15231 -33.73151 -31.76600 -30.04685 -29.75334 -28.42579 -26.05031 -25.49338 -24.55541 -23.90167 -22.54945 -21.90507 -21.07179 -19.99711 -19.48161 -19.01451 -18.35701 -17.79101 -17.36535 -17.00211 -16.62136 -16.31703 -16.22523 -16.15522 -15.83583 -15.34352 -15.23813 -15.04650 -14.99723 -14.78590 -14.63030 -14.31496 -14.10734 -13.93825 -13.74295 -13.44515 -13.27842 -13.05389 -12.91703 -12.65440 -12.42279 -12.14488 -12.06369 -11.97986 -11.78315 -11.64376 -11.46536 -11.39829 -11.35663 -11.10585 -10.87723 -10.41492 -9.73163 -9.43761 -8.90045 -7.87103 -5.08566 0.64246 1.07593 1.22738 1.32638 1.37723 1.82094 1.95050 2.25202 2.34292 2.54216 3.06227 3.46834 3.51238 3.74581 3.78962 3.88285 3.97525 4.02181 4.08662 4.19280 4.28088 4.29915 4.31673 4.38054 4.41234 4.61884 4.68596 4.70607 4.78806 4.82984 4.94233 4.98583 5.04203 5.11254 5.22830 5.24603 5.41483 5.49546 5.52022 5.84833 5.87066 5.96297 6.01734 6.34928 6.35691 6.58265 7.11565 7.25189 7.49575 8.04367 8.22369 9.37233 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.006876 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.739285 B = 4071.034989 C = 5422.315621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.136 4.136 6 H 0.042 0.958 7 C -0.076 4.076 8 N -0.993 5.993 9 Si 0.933 3.067 10 H -0.302 1.302 11 H -0.302 1.302 12 H -0.261 1.261 13 C 0.149 3.851 14 H 0.101 0.899 15 C -0.132 4.132 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.102 3.898 19 N -0.611 5.611 20 C 0.462 3.538 21 O -0.494 6.494 22 C 0.101 3.899 23 N -0.561 5.561 24 C 0.524 3.476 25 O -0.498 6.498 26 C 0.074 3.926 27 N -0.715 5.715 28 C 0.698 3.302 29 O -0.588 6.588 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.025 0.975 33 H 0.354 0.646 34 H 0.244 0.756 35 H 0.030 0.970 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.135 0.865 46 H 0.174 0.826 47 H 0.449 0.551 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 0.697 -19.866 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.075 0.925 4 N -0.368 5.368 5 C -0.269 4.269 6 H 0.060 0.940 7 C -0.264 4.264 8 N -0.649 5.649 9 Si 0.766 3.234 10 H -0.230 1.230 11 H -0.230 1.230 12 H -0.187 1.187 13 C 0.045 3.955 14 H 0.119 0.881 15 C -0.171 4.171 16 C -0.148 4.148 17 C -0.174 4.174 18 C -0.019 4.019 19 N -0.348 5.348 20 C 0.247 3.753 21 O -0.367 6.367 22 C -0.024 4.024 23 N -0.306 5.306 24 C 0.314 3.686 25 O -0.370 6.370 26 C -0.052 4.052 27 N -0.379 5.379 28 C 0.399 3.601 29 O -0.464 6.464 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.188 0.812 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.057 0.943 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.168 0.832 45 H 0.153 0.847 46 H 0.191 0.809 47 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 8.228 0.891 -19.687 21.356 hybrid contribution 0.315 -1.307 1.524 2.033 sum 8.543 -0.416 -18.163 20.076 Atomic orbital electron populations 1.22386 0.97961 1.01010 1.00572 1.20734 0.91369 0.96741 0.84880 0.92513 1.42746 1.78880 1.08199 1.06987 1.18635 1.29235 0.92803 0.86178 0.93996 1.25029 1.05065 1.00279 0.96034 1.69837 1.58014 1.36242 1.00770 0.85695 0.77489 0.84215 0.76049 1.22990 1.22986 1.18671 1.21575 0.79581 0.96158 0.98184 0.88089 1.21998 1.01639 0.94718 0.98750 1.21495 0.94907 1.00513 0.97862 1.21947 0.96797 0.96159 1.02485 1.22045 0.97197 0.91433 0.91246 1.48018 1.07006 1.46964 1.32807 1.21243 0.90238 0.81376 0.82415 1.91075 1.67732 1.47745 1.30144 1.21664 0.92551 0.96864 0.91337 1.45866 1.58874 1.10011 1.15879 1.21410 0.75804 0.81108 0.90286 1.90761 1.48405 1.60637 1.37191 1.22693 1.06661 0.88272 0.87545 1.45321 1.68310 1.05637 1.18655 1.16047 0.77570 0.85491 0.81013 1.90992 1.60951 1.18127 1.76343 0.90750 0.93063 0.95581 0.81225 0.94683 0.95149 0.89822 0.89274 0.91177 0.87558 0.94325 0.88172 0.88861 0.85973 0.83233 0.84695 0.80929 0.70521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 9.16 71.98 0.66 -5.05 16 2 C 0.17 6.91 1.88 44.99 0.08 7.00 16 3 H 0.06 2.69 5.90 -6.76 -0.04 2.65 16 4 N -0.73 -36.63 3.42 -322.94 -1.10 -37.73 16 5 C -0.14 -8.45 8.47 84.03 0.71 -7.74 16 6 H 0.04 2.92 8.06 -2.91 -0.02 2.90 16 7 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 8 N -0.99 -69.17 13.97 21.65 0.30 -68.87 16 9 Si 0.93 53.05 27.73 68.60 1.90 54.96 16 10 H -0.30 -18.03 7.11 99.48 0.71 -17.32 16 11 H -0.30 -17.22 7.11 99.48 0.71 -16.51 16 12 H -0.26 -13.51 6.52 99.48 0.65 -12.86 16 13 C 0.15 4.39 2.71 44.97 0.12 4.51 16 14 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.13 -3.57 4.88 30.68 0.15 -3.42 16 16 C -0.11 -2.00 5.88 30.63 0.18 -1.82 16 17 C -0.14 -2.38 6.08 30.67 0.19 -2.20 16 18 C 0.10 1.81 6.33 86.36 0.55 2.35 16 19 N -0.61 -17.52 2.97 -795.04 -2.36 -19.89 16 20 C 0.46 16.84 7.45 87.66 0.65 17.50 16 21 O -0.49 -23.59 9.18 -3.04 -0.03 -23.62 16 22 C 0.10 2.92 4.57 85.63 0.39 3.32 16 23 N -0.56 -18.34 2.09 -777.21 -1.63 -19.97 16 24 C 0.52 15.02 8.32 87.94 0.73 15.75 16 25 O -0.50 -15.83 17.75 -2.87 -0.05 -15.88 16 26 C 0.07 1.50 7.97 85.76 0.68 2.19 16 27 N -0.71 -19.65 6.58 -480.32 -3.16 -22.81 16 28 C 0.70 26.17 8.62 179.44 1.55 27.71 16 29 O -0.59 -28.02 17.48 -3.83 -0.07 -28.09 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.05 1.75 7.00 -2.39 -0.02 1.73 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.35 17.96 3.49 -92.71 -0.32 17.64 16 34 H 0.24 16.54 8.31 -92.72 -0.77 15.77 16 35 H 0.03 1.06 6.04 -2.39 -0.01 1.05 16 36 H 0.08 2.08 7.02 -2.39 -0.02 2.06 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.36 5.96 -2.39 -0.01 1.34 16 43 H 0.12 3.30 7.21 -2.39 -0.02 3.29 16 44 H 0.15 3.12 7.96 -2.39 -0.02 3.10 16 45 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.45 10.62 8.96 -92.71 -0.83 9.79 16 Total: -1.00 -97.09 367.09 0.70 -96.39 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.22 Total: 29.88 kcal Atomic # 6 Polarization: 48.51 SS G_CDS: 7.12 Total: 55.62 kcal Atomic # 7 Polarization: -161.31 SS G_CDS: -7.95 Total: -169.27 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -0.15 Total: -67.59 kcal Atomic # 14 Polarization: 53.05 SS G_CDS: 1.90 Total: 54.96 kcal Total: -97.09 0.70 -96.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.017 kcal (2) G-P(sol) polarization free energy of solvation -97.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds