Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46992 * 2 1 4 4 N 1.46502 * 109.47306 * 239.99437 * 2 1 3 5 5 C 1.36940 * 119.99507 * 74.22105 * 4 2 1 6 6 H 1.08000 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99451 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00292 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99643 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47221 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47154 * 119.99607 * 9 7 5 12 12 H 1.48508 * 109.46744 * 239.99311 * 9 7 5 13 13 C 1.53003 * 109.47062 * 119.99828 * 2 1 3 14 14 H 1.09003 * 109.70115 * 73.07513 * 13 2 1 15 15 C 1.52760 * 109.50609 * 312.96306 * 13 2 1 16 16 C 1.53043 * 109.38138 * 185.70932 * 15 13 2 17 17 C 1.53040 * 109.54098 * 61.23691 * 16 15 13 18 18 C 1.53195 * 109.31051 * 298.63604 * 17 16 15 19 19 N 1.46923 * 109.58613 * 193.43586 * 13 2 1 20 20 C 1.34777 * 120.63090 * 353.41432 * 19 13 2 21 21 O 1.21275 * 119.99990 * 354.64491 * 20 19 13 22 22 C 1.50703 * 119.99897 * 174.64584 * 20 19 13 23 23 N 1.46499 * 109.46871 * 180.02562 * 22 20 19 24 24 C 1.34771 * 124.17862 * 269.96965 * 23 22 20 25 25 O 1.21235 * 127.15530 * 0.02562 * 24 23 22 26 26 C 1.51580 * 105.68538 * 180.02562 * 24 23 22 27 27 N 1.47317 * 103.59323 * 0.02562 * 26 24 23 28 28 C 1.33789 * 124.17627 * 90.02499 * 23 22 20 29 29 O 1.21539 * 123.77144 * 0.21724 * 28 23 22 30 30 H 1.09004 * 109.46906 * 185.96215 * 1 2 3 31 31 H 1.08992 * 109.46882 * 305.96470 * 1 2 3 32 32 H 1.08994 * 109.46565 * 65.96737 * 1 2 3 33 33 H 0.96993 * 120.00353 * 254.22282 * 4 2 1 34 34 H 0.97002 * 120.00076 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.57348 * 65.67072 * 15 13 2 36 36 H 1.09005 * 109.35925 * 305.61031 * 15 13 2 37 37 H 1.09000 * 109.46068 * 301.21207 * 16 15 13 38 38 H 1.09007 * 109.45876 * 181.25934 * 16 15 13 39 39 H 1.09001 * 109.49844 * 178.68664 * 17 16 15 40 40 H 1.08992 * 109.52212 * 58.60334 * 17 16 15 41 41 H 1.09001 * 109.58494 * 294.84921 * 18 17 16 42 42 H 1.09001 * 109.58688 * 174.42447 * 18 17 16 43 43 H 1.09000 * 109.46819 * 60.00304 * 22 20 19 44 44 H 1.09003 * 109.46985 * 300.00288 * 22 20 19 45 45 H 1.08998 * 110.59715 * 241.47656 * 26 24 23 46 46 H 1.08996 * 110.73007 * 118.59389 * 26 24 23 47 47 H 0.96996 * 126.68742 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0185 -0.6907 -1.1961 5 6 1.9426 -0.0789 -2.4189 6 1 1.5224 0.9125 -2.5015 7 6 2.4049 -0.7336 -3.5523 8 7 2.9165 -1.9421 -3.4516 9 14 2.3021 0.1012 -5.2203 10 1 1.6915 1.4458 -5.0641 11 1 3.6667 0.2399 -5.7893 12 1 1.4660 -0.7188 -6.1334 13 6 2.0401 -0.7212 1.2493 14 1 1.8809 -1.7945 1.1447 15 6 1.2849 -0.2126 2.4759 16 6 1.8924 -0.8291 3.7381 17 6 3.3577 -0.4048 3.8606 18 6 4.1376 -0.9206 2.6470 19 7 3.4736 -0.4505 1.4236 20 6 4.1651 0.2211 0.4817 21 8 3.6296 0.5233 -0.5637 22 6 5.6037 0.5966 0.7274 23 7 6.1267 1.3149 -0.4374 24 6 6.7263 0.7197 -1.4874 25 8 6.9267 -0.4661 -1.6407 26 6 7.0980 1.8413 -2.4369 27 7 6.6204 3.0519 -1.7466 28 6 6.0690 2.6428 -0.5897 29 8 5.5777 3.3959 0.2280 30 1 -0.3633 -1.0222 0.1068 31 1 -0.3633 0.6035 0.8317 32 1 -0.3632 0.4185 -0.9386 33 1 2.3955 -1.5813 -1.1219 34 1 3.2399 -2.3994 -4.2436 35 1 0.2350 -0.4960 2.4018 36 1 1.3665 0.8732 2.5259 37 1 1.8329 -1.9157 3.6764 38 1 1.3403 -0.4845 4.6125 39 1 3.7832 -0.8252 4.7719 40 1 3.4202 0.6826 3.8978 41 1 4.1530 -2.0104 2.6588 42 1 5.1579 -0.5383 2.6790 43 1 6.1918 -0.3063 0.8921 44 1 5.6669 1.2370 1.6072 45 1 6.5893 1.7187 -3.3930 46 1 8.1777 1.8830 -2.5808 47 1 6.6901 3.9657 -2.0642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = -12.828809 kcal Electronic energy + Delta-G solvation = -32523.783094 eV Core-core repulsion = 28324.035671 eV Total energy + Delta-G solvation = -4199.747422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12087 -40.04288 -38.29235 -36.98762 -35.86856 -35.40751 -34.16077 -32.62092 -32.17200 -29.85431 -28.65192 -27.72541 -27.32206 -24.75158 -24.22518 -22.73481 -22.65772 -21.38143 -20.23119 -19.88304 -18.80925 -17.82036 -17.31445 -16.65879 -16.55881 -16.01148 -15.75959 -15.16286 -15.01209 -14.80672 -14.55589 -14.27833 -13.96238 -13.85459 -13.83655 -13.55304 -13.36787 -13.19386 -12.96553 -12.73477 -12.58736 -12.12687 -11.94530 -11.72171 -11.35034 -11.11536 -10.92532 -10.81101 -10.80570 -10.67633 -10.55707 -10.40778 -10.12212 -10.04727 -9.87953 -9.61911 -9.40853 -9.38937 -8.62480 -8.27953 -7.96983 -6.44883 -5.44791 -2.65098 1.91959 2.26668 3.12702 3.29241 3.34384 3.52868 3.54548 3.60636 3.63014 4.18543 4.73628 4.79336 4.85579 4.87612 4.95306 5.06990 5.09498 5.24188 5.26150 5.30761 5.42865 5.47508 5.63681 5.65710 5.76655 5.80656 5.85127 5.89965 5.94567 6.03714 6.12709 6.16168 6.17928 6.39517 6.49866 6.51057 6.83191 6.85265 6.94829 7.09213 7.19433 7.41066 7.62329 7.93659 7.97657 8.26994 8.71522 8.94918 9.83326 10.41882 10.77541 11.79337 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008438 B = 0.006848 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.506707 B = 4088.027573 C = 6295.093549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.182 3.818 3 H 0.056 0.944 4 N -0.691 5.691 5 C -0.181 4.181 6 H 0.061 0.939 7 C -0.026 4.026 8 N -0.939 5.939 9 Si 0.892 3.108 10 H -0.285 1.285 11 H -0.298 1.298 12 H -0.297 1.297 13 C 0.150 3.850 14 H 0.066 0.934 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.135 4.135 18 C 0.110 3.890 19 N -0.613 5.613 20 C 0.460 3.540 21 O -0.420 6.420 22 C 0.104 3.896 23 N -0.558 5.558 24 C 0.527 3.473 25 O -0.455 6.455 26 C 0.065 3.935 27 N -0.729 5.729 28 C 0.712 3.288 29 O -0.550 6.550 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.247 0.753 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 5.744 13.803 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.072 3.928 3 H 0.074 0.926 4 N -0.331 5.331 5 C -0.313 4.313 6 H 0.079 0.921 7 C -0.220 4.220 8 N -0.591 5.591 9 Si 0.726 3.274 10 H -0.211 1.211 11 H -0.226 1.226 12 H -0.225 1.225 13 C 0.046 3.954 14 H 0.084 0.916 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.173 4.173 18 C -0.014 4.014 19 N -0.351 5.351 20 C 0.243 3.757 21 O -0.285 6.285 22 C -0.022 4.022 23 N -0.304 5.304 24 C 0.314 3.686 25 O -0.323 6.323 26 C -0.062 4.062 27 N -0.393 5.393 28 C 0.413 3.587 29 O -0.424 6.424 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 7.496 5.727 13.433 16.415 hybrid contribution 0.160 0.382 -1.113 1.187 sum 7.656 6.109 12.320 15.740 Atomic orbital electron populations 1.22552 0.99721 1.00122 1.00373 1.20391 0.90491 0.96664 0.85287 0.92610 1.42231 1.71946 1.17259 1.01649 1.19019 1.29996 0.97979 0.84341 0.92147 1.24537 1.03405 0.97033 0.97005 1.69645 1.49020 1.13044 1.27345 0.86279 0.76791 0.78351 0.85973 1.21099 1.22588 1.22508 1.21408 0.78870 0.99526 0.95568 0.91647 1.21947 0.99747 1.00984 0.94033 1.21513 0.95455 1.00705 0.97921 1.21923 0.96211 1.01594 0.97571 1.21623 0.95980 0.99300 0.84450 1.47820 1.09554 1.58200 1.19548 1.20606 0.88152 0.81981 0.84993 1.91295 1.67075 1.47884 1.22291 1.21476 0.95245 0.98217 0.87212 1.45739 1.55072 1.08037 1.21529 1.20744 0.76421 0.89490 0.81927 1.90852 1.52133 1.14452 1.74834 1.22440 1.02874 0.82868 0.98060 1.45296 1.63862 1.09699 1.20442 1.15702 0.78413 0.81775 0.82832 1.90974 1.49319 1.56211 1.45899 0.93851 0.94523 0.92548 0.78952 0.94331 0.90572 0.91664 0.91926 0.92097 0.91224 0.91523 0.91607 0.90595 0.87083 0.86880 0.85763 0.86268 0.71773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.42 37.16 0.31 -2.88 16 2 C 0.18 3.83 1.84 -67.92 -0.12 3.71 16 3 H 0.06 1.33 6.35 -51.93 -0.33 1.00 16 4 N -0.69 -18.03 3.24 -53.42 -0.17 -18.21 16 5 C -0.18 -5.29 8.18 -15.06 -0.12 -5.41 16 6 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 8 N -0.94 -29.91 13.06 55.49 0.72 -29.18 16 9 Si 0.89 23.80 29.55 -169.99 -5.02 18.77 16 10 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 13 C 0.15 2.53 2.61 -67.82 -0.18 2.35 16 14 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 15 C -0.13 -1.69 4.38 -26.83 -0.12 -1.81 16 16 C -0.12 -1.23 5.89 -26.69 -0.16 -1.38 16 17 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 18 C 0.11 1.24 6.35 -3.71 -0.02 1.22 16 19 N -0.61 -9.77 2.98 -165.47 -0.49 -10.27 16 20 C 0.46 8.70 7.49 -10.98 -0.08 8.61 16 21 O -0.42 -10.01 9.43 5.56 0.05 -9.96 16 22 C 0.10 1.57 4.53 -5.19 -0.02 1.55 16 23 N -0.56 -9.09 2.09 -122.02 -0.26 -9.35 16 24 C 0.53 8.73 8.32 -10.56 -0.09 8.65 16 25 O -0.45 -9.12 17.76 5.60 0.10 -9.02 16 26 C 0.07 0.76 7.97 -4.31 -0.03 0.73 16 27 N -0.73 -8.75 6.58 -65.74 -0.43 -9.18 16 28 C 0.71 11.47 8.62 -88.02 -0.76 10.71 16 29 O -0.55 -10.32 17.48 5.33 0.09 -10.22 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.58 6.84 -51.93 -0.36 0.23 16 32 H 0.06 1.19 7.87 -51.93 -0.41 0.79 16 33 H 0.38 10.73 7.68 -40.82 -0.31 10.42 16 34 H 0.25 7.71 8.31 -40.82 -0.34 7.38 16 35 H 0.08 0.96 6.83 -51.93 -0.35 0.60 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 43 H 0.11 1.47 7.60 -51.93 -0.39 1.07 16 44 H 0.11 1.44 7.61 -51.93 -0.40 1.04 16 45 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.44 3.93 8.96 -40.82 -0.37 3.56 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -38.98 372.87 -8.44 -47.42 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.00 Total: 9.88 kcal Atomic # 6 Polarization: 25.35 SS G_CDS: -1.65 Total: 23.70 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -0.63 Total: -76.18 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: 0.25 Total: -29.21 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.98 -8.44 -47.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.588 kcal (2) G-P(sol) polarization free energy of solvation -38.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds