Wall clock time and date at job start Tue Mar 31 2020 21:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52206 * 2 1 4 4 C 1.53041 * 109.49525 * 239.92333 * 2 1 3 5 5 C 1.53045 * 109.53782 * 301.41076 * 4 2 1 6 6 C 1.53196 * 109.31317 * 298.63816 * 5 4 2 7 7 N 1.46930 * 108.77110 * 54.63232 * 6 5 4 8 8 C 1.34783 * 120.62557 * 126.37433 * 7 6 5 9 9 O 1.21277 * 119.99843 * 185.16599 * 8 7 6 10 10 C 1.50698 * 119.99939 * 5.16124 * 8 7 6 11 11 N 1.46500 * 109.47097 * 180.02562 * 10 8 7 12 12 C 1.34766 * 124.18240 * 90.00198 * 11 10 8 13 13 O 1.21235 * 127.15396 * 359.97438 * 12 11 10 14 14 C 1.51583 * 105.68603 * 179.97438 * 12 11 10 15 15 N 1.47306 * 103.59221 * 359.97438 * 14 12 11 16 16 C 1.33800 * 124.17633 * 269.70005 * 11 10 8 17 17 O 1.21539 * 123.76671 * 0.03484 * 16 11 10 18 18 C 1.46915 * 118.74381 * 306.38975 * 7 6 5 19 19 H 1.09000 * 109.58793 * 293.82280 * 18 7 6 20 20 C 1.53000 * 109.70681 * 173.46668 * 18 7 6 21 21 N 1.46494 * 109.47269 * 179.81293 * 20 18 7 22 22 C 1.36948 * 119.99941 * 174.63268 * 21 20 18 23 23 H 1.07997 * 119.99713 * 359.97438 * 22 21 20 24 24 C 1.38804 * 119.99839 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99938 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00387 * 359.97438 * 24 22 21 27 27 H 1.48492 * 109.47383 * 90.00069 * 26 24 22 28 28 H 1.48503 * 109.47294 * 210.00317 * 26 24 22 29 29 H 1.48498 * 109.46976 * 329.99909 * 26 24 22 30 30 H 1.08992 * 109.47576 * 299.91715 * 1 2 3 31 31 H 1.09007 * 109.47463 * 59.91771 * 1 2 3 32 32 H 1.09001 * 109.47113 * 179.91710 * 1 2 3 33 33 H 1.09001 * 109.46494 * 61.43549 * 4 2 1 34 34 H 1.09005 * 109.45707 * 181.39143 * 4 2 1 35 35 H 1.09001 * 109.49536 * 178.68756 * 5 4 2 36 36 H 1.08998 * 109.52456 * 58.60788 * 5 4 2 37 37 H 1.09005 * 109.58684 * 294.85150 * 6 5 4 38 38 H 1.08993 * 109.70233 * 174.49117 * 6 5 4 39 39 H 1.09000 * 109.47485 * 300.00061 * 10 8 7 40 40 H 1.09000 * 109.47568 * 60.00326 * 10 8 7 41 41 H 1.09005 * 110.59538 * 118.52367 * 14 12 11 42 42 H 1.08997 * 110.59921 * 241.46577 * 14 12 11 43 43 H 0.97001 * 126.68595 * 180.02562 * 15 14 12 44 44 H 1.08997 * 109.47133 * 299.81709 * 20 18 7 45 45 H 1.09003 * 109.47048 * 59.81312 * 20 18 7 46 46 H 0.97001 * 120.00290 * 354.63048 * 21 20 18 47 47 H 0.97003 * 120.00332 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 1.5030 -2.1557 -1.2661 6 6 2.0140 -2.9040 -0.0309 7 7 1.6515 -2.1381 1.1694 8 6 0.9740 -2.7219 2.1778 9 8 0.5989 -2.0578 3.1207 10 6 0.6826 -4.1998 2.1336 11 7 -0.0599 -4.5873 3.3356 12 6 -1.4043 -4.5824 3.4296 13 8 -2.1973 -4.2679 2.5682 14 6 -1.7184 -5.0518 4.8362 15 7 -0.3900 -5.2895 5.4267 16 6 0.5129 -4.9954 4.4738 17 8 1.7146 -5.0870 4.6304 18 6 2.0413 -0.7239 1.2495 19 1 3.1274 -0.6463 1.2980 20 6 1.4256 -0.0889 2.4980 21 7 1.8210 1.3195 2.5752 22 6 1.2994 2.1246 3.5525 23 1 0.5962 1.7212 4.2661 24 6 1.6736 3.4593 3.6253 25 7 1.1719 4.2331 4.5643 26 14 2.8893 4.1572 2.3906 27 1 2.1524 4.6854 1.2146 28 1 3.6630 5.2551 3.0240 29 1 3.8191 3.0857 1.9517 30 1 -0.3634 0.5125 0.8906 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6987 -0.1957 -2.1390 34 1 3.1305 -0.7443 -1.2354 35 1 1.8481 -2.6627 -2.1672 36 1 0.4132 -2.1360 -1.2545 37 1 3.0980 -3.0042 -0.0868 38 1 1.5575 -3.8927 0.0148 39 1 0.0861 -4.4262 1.2498 40 1 1.6202 -4.7539 2.0909 41 1 -2.2512 -4.2777 5.3887 42 1 -2.2978 -5.9747 4.8121 43 1 -0.2029 -5.6008 6.3261 44 1 0.3392 -0.1589 2.4431 45 1 1.7791 -0.6147 3.3850 46 1 2.4523 1.6819 1.9340 47 1 1.4337 5.1658 4.6155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271749969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:51 Heat of formation + Delta-G solvation = -64.294540 kcal Electronic energy + Delta-G solvation = -31549.709834 eV Core-core repulsion = 27347.730690 eV Total energy + Delta-G solvation = -4201.979144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42286 -41.76197 -39.68874 -38.92972 -37.21662 -36.87636 -35.70323 -34.67791 -33.89051 -32.20039 -30.31497 -28.75279 -28.11913 -27.39516 -25.57862 -24.54027 -23.96319 -22.72020 -22.35083 -20.93299 -19.93612 -19.48789 -19.09548 -18.48071 -17.87022 -17.53619 -17.16150 -16.92682 -16.53039 -16.31022 -16.12713 -15.91919 -15.56568 -15.33117 -15.29688 -15.01577 -14.95679 -14.77152 -14.68445 -14.27021 -14.01416 -13.79377 -13.56571 -13.30434 -13.22105 -12.84750 -12.64243 -12.47458 -12.21098 -12.18127 -12.00663 -11.94957 -11.82760 -11.51196 -11.40541 -11.34414 -11.20061 -11.00398 -10.48763 -10.16255 -9.65134 -9.24179 -8.05328 -5.39064 0.59594 1.00532 1.31785 1.38249 1.45418 1.49218 1.74353 2.07731 2.26650 2.45456 3.01751 3.25055 3.32387 3.66758 3.71355 3.78241 3.83219 3.88108 4.05598 4.10270 4.17936 4.27583 4.29516 4.29553 4.35720 4.48536 4.60534 4.64622 4.66833 4.75927 4.85714 4.91640 5.02990 5.12375 5.18711 5.25257 5.32008 5.34177 5.53557 5.63535 5.71332 5.80476 5.94919 6.17120 6.29315 6.37865 7.00567 7.05361 7.12383 7.78878 8.02774 9.17306 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.004086 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.717326 B = 6851.733080 C = 8282.994364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 H 0.064 0.936 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.097 3.903 7 N -0.596 5.596 8 C 0.482 3.518 9 O -0.563 6.563 10 C 0.104 3.896 11 N -0.568 5.568 12 C 0.517 3.483 13 O -0.499 6.499 14 C 0.074 3.926 15 N -0.710 5.710 16 C 0.699 3.301 17 O -0.584 6.584 18 C 0.148 3.852 19 H 0.076 0.924 20 C 0.180 3.820 21 N -0.755 5.755 22 C -0.231 4.231 23 H 0.038 0.962 24 C -0.065 4.065 25 N -0.987 5.987 26 Si 0.962 3.038 27 H -0.271 1.271 28 H -0.291 1.291 29 H -0.251 1.251 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.172 0.828 43 H 0.454 0.546 44 H 0.025 0.975 45 H 0.011 0.989 46 H 0.363 0.637 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -27.327 -12.605 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.169 4.169 6 C -0.024 4.024 7 N -0.330 5.330 8 C 0.270 3.730 9 O -0.441 6.441 10 C -0.021 4.021 11 N -0.313 5.313 12 C 0.307 3.693 13 O -0.370 6.370 14 C -0.052 4.052 15 N -0.375 5.375 16 C 0.399 3.601 17 O -0.461 6.461 18 C 0.044 3.956 19 H 0.094 0.906 20 C 0.055 3.945 21 N -0.403 5.403 22 C -0.362 4.362 23 H 0.056 0.944 24 C -0.256 4.256 25 N -0.638 5.638 26 Si 0.788 3.212 27 H -0.197 1.197 28 H -0.218 1.218 29 H -0.175 1.175 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.189 0.811 43 H 0.301 0.699 44 H 0.043 0.957 45 H 0.029 0.971 46 H 0.197 0.803 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.964 -26.842 -12.397 29.632 hybrid contribution 0.571 1.303 0.573 1.533 sum -1.393 -25.540 -11.824 28.178 Atomic orbital electron populations 1.21740 0.95433 1.01335 1.00701 1.21454 0.96342 0.99189 0.94875 0.91740 1.21565 1.01142 0.96187 0.95825 1.21972 1.01465 0.95210 0.98292 1.22243 1.02356 0.95408 0.82378 1.48113 1.55496 1.10352 1.19018 1.21507 0.78029 0.91081 0.82399 1.90867 1.52353 1.64683 1.36176 1.21711 1.01139 0.91573 0.87686 1.45986 1.09550 1.61191 1.14572 1.21611 0.81094 0.75155 0.91441 1.90811 1.52718 1.46504 1.46987 1.22718 0.86678 1.07261 0.88547 1.45336 1.05644 1.70698 1.15797 1.16006 0.85397 0.77535 0.81122 1.90988 1.13647 1.59853 1.81568 1.21342 0.98377 0.80612 0.95234 0.90618 1.21080 0.96922 0.81902 0.94626 1.42824 1.53777 1.07991 1.35743 1.18887 1.19555 0.91658 1.06130 0.94379 1.25580 1.02734 0.96251 1.01067 1.69913 1.49731 1.06600 1.37546 0.85310 0.79136 0.78092 0.78663 1.19707 1.21785 1.17542 0.95845 0.91680 0.92263 0.90390 0.90586 0.87123 0.91642 0.88967 0.86795 0.82992 0.83558 0.84079 0.81103 0.69878 0.95737 0.97092 0.80275 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.21 71.98 0.59 -3.64 16 2 C -0.10 -2.85 2.56 -10.72 -0.03 -2.88 16 3 H 0.06 2.10 7.20 -2.39 -0.02 2.08 16 4 C -0.11 -1.96 5.43 30.62 0.17 -1.79 16 5 C -0.13 -1.66 5.74 30.67 0.18 -1.49 16 6 C 0.10 1.31 6.33 86.36 0.55 1.85 16 7 N -0.60 -15.38 2.41 -795.04 -1.92 -17.29 16 8 C 0.48 14.70 7.68 87.66 0.67 15.37 16 9 O -0.56 -23.91 11.85 -3.02 -0.04 -23.95 16 10 C 0.10 2.10 4.58 85.63 0.39 2.49 16 11 N -0.57 -12.98 2.09 -777.21 -1.63 -14.60 16 12 C 0.52 10.81 8.32 87.94 0.73 11.54 16 13 O -0.50 -13.29 17.76 -2.89 -0.05 -13.35 16 14 C 0.07 0.79 7.97 85.76 0.68 1.47 16 15 N -0.71 -10.34 6.58 -480.32 -3.16 -13.50 16 16 C 0.70 17.02 8.62 179.44 1.55 18.57 16 17 O -0.58 -18.80 17.48 -3.84 -0.07 -18.87 16 18 C 0.15 4.92 2.73 44.98 0.12 5.04 16 19 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 20 C 0.18 8.47 3.63 86.38 0.31 8.78 16 21 N -0.76 -39.97 5.08 -343.46 -1.75 -41.72 16 22 C -0.23 -14.80 10.47 84.03 0.88 -13.92 16 23 H 0.04 2.76 8.06 -2.91 -0.02 2.73 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 25 N -0.99 -67.37 13.97 21.65 0.30 -67.06 16 26 Si 0.96 47.89 27.74 68.60 1.90 49.79 16 27 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 30 H 0.02 0.94 6.34 -2.39 -0.02 0.92 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 1.71 5.97 -2.39 -0.01 1.69 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.97 6.33 -2.39 -0.02 0.96 16 37 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.11 0.81 5.96 -2.39 -0.01 0.79 16 39 H 0.15 2.06 7.34 -2.39 -0.02 2.05 16 40 H 0.15 2.28 7.82 -2.39 -0.02 2.26 16 41 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.17 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.45 4.25 8.96 -92.71 -0.83 3.42 16 44 H 0.02 1.29 5.23 -2.39 -0.01 1.28 16 45 H 0.01 0.61 6.44 -2.39 -0.02 0.59 16 46 H 0.36 17.69 4.66 -92.71 -0.43 17.26 16 47 H 0.26 16.62 8.31 -92.71 -0.77 15.85 16 Total: -1.00 -98.32 367.23 0.57 -97.75 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.29 Total: 25.07 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: 7.26 Total: 37.73 kcal Atomic # 7 Polarization: -146.03 SS G_CDS: -8.15 Total: -154.18 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -0.15 Total: -56.16 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.90 Total: 49.79 kcal Total: -98.32 0.57 -97.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271749969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.452 kcal (2) G-P(sol) polarization free energy of solvation -98.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds