Wall clock time and date at job start Tue Mar 31 2020 21:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52278 * 2 1 4 4 C 1.53049 * 109.49889 * 120.07981 * 2 1 3 5 5 C 1.53036 * 109.53586 * 58.58643 * 4 2 1 6 6 C 1.53198 * 109.31380 * 61.36441 * 5 4 2 7 7 N 1.46921 * 108.77498 * 305.36733 * 6 5 4 8 8 C 1.34776 * 120.62721 * 233.62675 * 7 6 5 9 9 O 1.21283 * 119.99710 * 185.58709 * 8 7 6 10 10 C 1.50697 * 120.00092 * 5.58640 * 8 7 6 11 11 N 1.46502 * 109.47076 * 180.02562 * 10 8 7 12 12 C 1.34764 * 124.17718 * 90.00081 * 11 10 8 13 13 O 1.21239 * 127.15927 * 359.92692 * 12 11 10 14 14 C 1.51582 * 105.68567 * 179.97438 * 12 11 10 15 15 N 1.47314 * 103.59258 * 0.02562 * 14 12 11 16 16 C 1.33790 * 124.17819 * 269.69654 * 11 10 8 17 17 O 1.21541 * 123.77190 * 0.04531 * 16 11 10 18 18 C 1.46923 * 118.74350 * 53.60534 * 7 6 5 19 19 H 1.09006 * 109.70311 * 66.24592 * 18 7 6 20 20 C 1.52995 * 109.58969 * 186.60425 * 18 7 6 21 21 N 1.46503 * 109.47521 * 177.86823 * 20 18 7 22 22 C 1.36935 * 120.00234 * 185.04434 * 21 20 18 23 23 H 1.07996 * 119.99727 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99848 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99969 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47050 * 89.99688 * 26 24 22 28 28 H 1.48493 * 109.47302 * 210.00104 * 26 24 22 29 29 H 1.48503 * 109.47007 * 329.99833 * 26 24 22 30 30 H 1.09003 * 109.47005 * 180.08442 * 1 2 3 31 31 H 1.09002 * 109.47111 * 300.08000 * 1 2 3 32 32 H 1.08995 * 109.47100 * 60.08260 * 1 2 3 33 33 H 1.08994 * 109.45763 * 178.61014 * 4 2 1 34 34 H 1.09006 * 109.45928 * 298.56823 * 4 2 1 35 35 H 1.08998 * 109.50001 * 301.41432 * 5 4 2 36 36 H 1.08999 * 109.49611 * 181.31859 * 5 4 2 37 37 H 1.08996 * 109.59036 * 185.57486 * 6 5 4 38 38 H 1.09007 * 109.58322 * 65.15353 * 6 5 4 39 39 H 1.09001 * 109.47048 * 299.99884 * 10 8 7 40 40 H 1.08999 * 109.47339 * 60.00425 * 10 8 7 41 41 H 1.08999 * 110.60232 * 118.52331 * 14 12 11 42 42 H 1.09003 * 110.60574 * 241.47497 * 14 12 11 43 43 H 0.96995 * 126.69064 * 180.02562 * 15 14 12 44 44 H 1.08995 * 109.47261 * 297.86821 * 20 18 7 45 45 H 1.08998 * 109.47331 * 57.86664 * 20 18 7 46 46 H 0.97005 * 119.99853 * 5.03826 * 21 20 18 47 47 H 0.97003 * 119.99669 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0140 -2.9040 0.0308 7 7 1.6516 -2.1381 -1.1695 8 6 0.9741 -2.7218 -2.1778 9 8 0.7691 -2.1100 -3.2048 10 6 0.4713 -4.1347 -2.0293 11 7 -0.2268 -4.5358 -3.2532 12 6 0.3706 -5.1283 -4.3060 13 8 1.5428 -5.4178 -4.4153 14 6 -0.7277 -5.3563 -5.3255 15 7 -1.9291 -4.8145 -4.6673 16 6 -1.5372 -4.3644 -3.4616 17 8 -2.2889 -3.8549 -2.6537 18 6 2.0413 -0.7238 -1.2496 19 1 3.1273 -0.6441 -1.2993 20 6 1.4229 -0.0912 -2.4978 21 7 1.7710 1.3310 -2.5482 22 6 1.2420 2.1312 -3.5254 23 1 0.5685 1.7139 -4.2591 24 6 1.5715 3.4788 -3.5727 25 7 2.3920 3.9875 -2.6781 26 14 0.8504 4.5704 -4.9061 27 1 -0.4288 5.1548 -4.4294 28 1 1.8059 5.6621 -5.2226 29 1 0.6009 3.7618 -6.1265 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5125 -0.8907 33 1 3.1305 -0.7443 1.2353 34 1 1.6987 -0.1958 2.1390 35 1 0.4133 -2.1355 1.2541 36 1 1.8481 -2.6628 2.1671 37 1 1.5555 -3.8918 -0.0138 38 1 3.0980 -3.0043 0.0868 39 1 1.3140 -4.8039 -1.8562 40 1 -0.2154 -4.1890 -1.1846 41 1 -0.5163 -4.8113 -6.2454 42 1 -0.8481 -6.4206 -5.5281 43 1 -2.8282 -4.7912 -5.0304 44 1 1.8073 -0.5910 -3.3869 45 1 0.3389 -0.1988 -2.4607 46 1 2.3763 1.7058 -1.8892 47 1 2.6225 4.9292 -2.7114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271749974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:01 Heat of formation + Delta-G solvation = -35.621047 kcal Electronic energy + Delta-G solvation = -31509.310180 eV Core-core repulsion = 27308.574412 eV Total energy + Delta-G solvation = -4200.735768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55555 -40.50583 -38.74394 -37.67794 -36.26486 -35.14527 -34.51365 -33.34003 -32.09010 -30.03158 -29.24533 -27.84209 -26.69408 -25.91342 -24.16397 -23.13733 -23.04416 -21.57688 -21.00795 -19.85714 -18.40448 -18.23137 -17.60361 -17.01088 -16.95823 -16.46271 -16.06292 -15.65630 -15.45094 -14.92823 -14.76913 -14.41719 -14.34232 -14.26038 -14.10356 -13.89548 -13.81178 -13.37711 -13.19668 -13.06161 -12.80639 -12.28484 -12.13932 -11.85707 -11.36728 -11.34185 -11.18996 -10.92403 -10.81765 -10.70852 -10.61150 -10.48983 -10.39299 -10.25084 -10.04475 -9.89493 -9.75642 -9.59545 -8.88078 -8.64567 -8.33961 -6.71434 -5.63172 -2.88874 1.43746 1.84484 2.65303 2.74860 2.90653 3.14293 3.52477 3.57207 3.59800 3.74847 4.37423 4.46953 4.66566 4.69745 4.74111 4.82745 4.87083 4.91125 4.99764 5.14248 5.20338 5.34108 5.36724 5.40091 5.56267 5.71098 5.77259 5.84677 5.97420 6.01939 6.04126 6.10984 6.26355 6.35936 6.45077 6.48792 6.50485 6.78683 6.82393 6.84047 7.12683 7.15778 7.34307 7.52545 7.86747 7.90352 8.29151 8.57962 9.67462 10.26844 10.61982 11.60442 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.004180 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.958043 B = 6697.143584 C = 8469.346436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.107 3.893 7 N -0.600 5.600 8 C 0.496 3.504 9 O -0.504 6.504 10 C 0.100 3.900 11 N -0.561 5.561 12 C 0.526 3.474 13 O -0.467 6.467 14 C 0.066 3.934 15 N -0.728 5.728 16 C 0.708 3.292 17 O -0.537 6.537 18 C 0.145 3.855 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.735 5.735 22 C -0.222 4.222 23 H 0.068 0.932 24 C -0.019 4.019 25 N -0.938 5.938 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.442 0.558 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.378 0.622 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -24.381 4.653 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.017 4.017 7 N -0.335 5.335 8 C 0.281 3.719 9 O -0.378 6.378 10 C -0.026 4.026 11 N -0.307 5.307 12 C 0.314 3.686 13 O -0.336 6.336 14 C -0.062 4.062 15 N -0.393 5.393 16 C 0.408 3.592 17 O -0.410 6.410 18 C 0.042 3.958 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.381 5.381 22 C -0.354 4.354 23 H 0.086 0.914 24 C -0.213 4.213 25 N -0.588 5.588 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.286 0.714 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.212 0.788 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.495 -23.881 4.381 24.693 hybrid contribution -0.470 0.869 -0.538 1.125 sum -4.965 -23.013 3.843 23.854 Atomic orbital electron populations 1.21806 0.94829 1.00838 1.02285 1.21450 0.96893 1.00279 0.93093 0.88922 1.21581 1.00347 0.94964 0.98433 1.21971 1.01922 0.96721 0.96941 1.21768 1.00594 0.94477 0.84817 1.48047 1.56058 1.11769 1.17589 1.20598 0.78961 0.88188 0.84130 1.90859 1.55807 1.63053 1.28106 1.21565 0.98984 0.95758 0.86262 1.45816 1.09804 1.56428 1.18604 1.20882 0.89081 0.75759 0.82913 1.90831 1.15102 1.49677 1.78035 1.22444 0.83318 1.03022 0.97388 1.45332 1.11691 1.65498 1.16781 1.15752 0.81593 0.78630 0.83218 1.91036 1.55361 1.46784 1.47836 1.21629 0.98779 0.77947 0.97412 0.91143 1.21307 0.97545 0.84870 0.92971 1.42525 1.56408 1.03721 1.35462 1.19206 1.20828 0.90064 1.05262 0.91394 1.24671 1.00581 0.96884 0.99211 1.69655 1.39352 1.12784 1.37037 0.86211 0.78128 0.80480 0.81591 1.21927 1.21918 1.20914 0.93515 0.93529 0.91115 0.91955 0.91749 0.90927 0.91019 0.90355 0.90935 0.86136 0.85837 0.85645 0.85895 0.71381 0.93616 0.94693 0.78810 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.20 37.16 0.30 -2.06 16 2 C -0.10 -1.58 2.53 -90.50 -0.23 -1.81 16 3 H 0.09 1.75 7.07 -51.93 -0.37 1.38 16 4 C -0.12 -1.38 5.43 -26.69 -0.14 -1.52 16 5 C -0.14 -1.30 5.74 -26.61 -0.15 -1.46 16 6 C 0.11 1.02 6.35 -3.71 -0.02 0.99 16 7 N -0.60 -8.52 2.41 -165.22 -0.40 -8.92 16 8 C 0.50 7.75 7.60 -10.99 -0.08 7.67 16 9 O -0.50 -10.21 11.99 5.55 0.07 -10.14 16 10 C 0.10 1.12 4.54 -5.19 -0.02 1.10 16 11 N -0.56 -6.68 2.09 -122.02 -0.26 -6.93 16 12 C 0.53 5.73 8.31 -10.56 -0.09 5.64 16 13 O -0.47 -6.33 17.76 5.59 0.10 -6.23 16 14 C 0.07 0.41 7.97 -4.31 -0.03 0.38 16 15 N -0.73 -5.77 6.58 -65.73 -0.43 -6.21 16 16 C 0.71 8.82 8.62 -88.02 -0.76 8.06 16 17 O -0.54 -8.66 17.48 5.33 0.09 -8.57 16 18 C 0.14 2.55 2.78 -67.60 -0.19 2.36 16 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.65 3.59 -4.04 -0.01 3.64 16 21 N -0.74 -19.70 5.27 -59.91 -0.32 -20.01 16 22 C -0.22 -6.62 9.99 -15.06 -0.15 -6.77 16 23 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 25 N -0.94 -29.23 13.06 55.49 0.72 -28.50 16 26 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.05 0.73 5.97 -51.93 -0.31 0.42 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.46 6.39 -51.93 -0.33 1.13 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.12 1.02 7.58 -51.93 -0.39 0.63 16 40 H 0.12 1.18 7.63 -51.93 -0.40 0.78 16 41 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.44 2.38 8.96 -40.82 -0.37 2.01 16 44 H 0.05 1.17 6.26 -51.93 -0.33 0.85 16 45 H 0.04 0.87 5.52 -51.93 -0.29 0.58 16 46 H 0.38 10.37 6.65 -40.82 -0.27 10.10 16 47 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -39.33 370.22 -8.16 -47.49 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.61 Total: 8.30 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -1.68 Total: 15.56 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -0.68 Total: -70.58 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.26 Total: -24.94 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.33 -8.16 -47.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271749974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.866 kcal (2) G-P(sol) polarization free energy of solvation -39.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds