Wall clock time and date at job start Tue Mar 31 2020 21:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52278 * 2 1 4 4 C 1.53049 * 109.49889 * 120.07981 * 2 1 3 5 5 C 1.53036 * 109.53586 * 58.58643 * 4 2 1 6 6 C 1.53198 * 109.31380 * 61.36441 * 5 4 2 7 7 N 1.46921 * 108.77498 * 305.36733 * 6 5 4 8 8 C 1.34776 * 120.62721 * 233.62675 * 7 6 5 9 9 O 1.21283 * 119.99710 * 185.58709 * 8 7 6 10 10 C 1.50697 * 120.00092 * 5.58640 * 8 7 6 11 11 N 1.46502 * 109.47076 * 180.02562 * 10 8 7 12 12 C 1.34764 * 124.17718 * 90.00081 * 11 10 8 13 13 O 1.21239 * 127.15927 * 359.92692 * 12 11 10 14 14 C 1.51582 * 105.68567 * 179.97438 * 12 11 10 15 15 N 1.47314 * 103.59258 * 0.02562 * 14 12 11 16 16 C 1.33790 * 124.17819 * 269.69654 * 11 10 8 17 17 O 1.21541 * 123.77190 * 0.04531 * 16 11 10 18 18 C 1.46923 * 118.74350 * 53.60534 * 7 6 5 19 19 H 1.09006 * 109.70311 * 66.24592 * 18 7 6 20 20 C 1.52995 * 109.58969 * 186.60425 * 18 7 6 21 21 N 1.46503 * 109.47521 * 177.86823 * 20 18 7 22 22 C 1.36935 * 120.00234 * 185.04434 * 21 20 18 23 23 H 1.07996 * 119.99727 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99848 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99969 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47050 * 89.99688 * 26 24 22 28 28 H 1.48493 * 109.47302 * 210.00104 * 26 24 22 29 29 H 1.48503 * 109.47007 * 329.99833 * 26 24 22 30 30 H 1.09003 * 109.47005 * 180.08442 * 1 2 3 31 31 H 1.09002 * 109.47111 * 300.08000 * 1 2 3 32 32 H 1.08995 * 109.47100 * 60.08260 * 1 2 3 33 33 H 1.08994 * 109.45763 * 178.61014 * 4 2 1 34 34 H 1.09006 * 109.45928 * 298.56823 * 4 2 1 35 35 H 1.08998 * 109.50001 * 301.41432 * 5 4 2 36 36 H 1.08999 * 109.49611 * 181.31859 * 5 4 2 37 37 H 1.08996 * 109.59036 * 185.57486 * 6 5 4 38 38 H 1.09007 * 109.58322 * 65.15353 * 6 5 4 39 39 H 1.09001 * 109.47048 * 299.99884 * 10 8 7 40 40 H 1.08999 * 109.47339 * 60.00425 * 10 8 7 41 41 H 1.08999 * 110.60232 * 118.52331 * 14 12 11 42 42 H 1.09003 * 110.60574 * 241.47497 * 14 12 11 43 43 H 0.96995 * 126.69064 * 180.02562 * 15 14 12 44 44 H 1.08995 * 109.47261 * 297.86821 * 20 18 7 45 45 H 1.08998 * 109.47331 * 57.86664 * 20 18 7 46 46 H 0.97005 * 119.99853 * 5.03826 * 21 20 18 47 47 H 0.97003 * 119.99669 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 1.5030 -2.1557 1.2661 6 6 2.0140 -2.9040 0.0308 7 7 1.6516 -2.1381 -1.1695 8 6 0.9741 -2.7218 -2.1778 9 8 0.7691 -2.1100 -3.2048 10 6 0.4713 -4.1347 -2.0293 11 7 -0.2268 -4.5358 -3.2532 12 6 0.3706 -5.1283 -4.3060 13 8 1.5428 -5.4178 -4.4153 14 6 -0.7277 -5.3563 -5.3255 15 7 -1.9291 -4.8145 -4.6673 16 6 -1.5372 -4.3644 -3.4616 17 8 -2.2889 -3.8549 -2.6537 18 6 2.0413 -0.7238 -1.2496 19 1 3.1273 -0.6441 -1.2993 20 6 1.4229 -0.0912 -2.4978 21 7 1.7710 1.3310 -2.5482 22 6 1.2420 2.1312 -3.5254 23 1 0.5685 1.7139 -4.2591 24 6 1.5715 3.4788 -3.5727 25 7 2.3920 3.9875 -2.6781 26 14 0.8504 4.5704 -4.9061 27 1 -0.4288 5.1548 -4.4294 28 1 1.8059 5.6621 -5.2226 29 1 0.6009 3.7618 -6.1265 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5125 -0.8907 33 1 3.1305 -0.7443 1.2353 34 1 1.6987 -0.1958 2.1390 35 1 0.4133 -2.1355 1.2541 36 1 1.8481 -2.6628 2.1671 37 1 1.5555 -3.8918 -0.0138 38 1 3.0980 -3.0043 0.0868 39 1 1.3140 -4.8039 -1.8562 40 1 -0.2154 -4.1890 -1.1846 41 1 -0.5163 -4.8113 -6.2454 42 1 -0.8481 -6.4206 -5.5281 43 1 -2.8282 -4.7912 -5.0304 44 1 1.8073 -0.5910 -3.3869 45 1 0.3389 -0.1988 -2.4607 46 1 2.3763 1.7058 -1.8892 47 1 2.6225 4.9292 -2.7114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271749974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:01 Heat of formation + Delta-G solvation = -66.898205 kcal Electronic energy + Delta-G solvation = -31510.666459 eV Core-core repulsion = 27308.574412 eV Total energy + Delta-G solvation = -4202.092047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.41407 -41.72726 -39.67918 -38.90645 -37.20774 -36.72708 -35.68026 -34.64574 -33.77432 -31.79697 -30.28606 -28.68588 -28.02184 -27.30344 -25.62327 -24.78085 -23.95791 -22.74746 -22.27208 -20.91809 -19.59695 -19.24795 -19.08356 -18.48904 -17.85602 -17.56211 -17.24179 -16.80687 -16.40728 -16.29794 -16.17818 -15.84681 -15.37551 -15.30140 -15.25258 -15.11668 -14.99343 -14.84316 -14.57767 -14.22453 -14.01991 -13.58729 -13.39227 -13.23029 -13.07575 -12.80846 -12.67739 -12.46418 -12.18003 -12.15677 -12.04557 -11.97227 -11.81291 -11.47517 -11.39401 -11.32361 -11.18078 -10.98125 -10.47380 -10.12280 -9.60886 -8.95484 -7.97719 -5.24981 0.60534 1.01102 1.40692 1.43414 1.49252 1.52347 1.76569 2.09283 2.27760 2.53892 3.02817 3.34121 3.36752 3.72687 3.74761 3.83411 3.89781 4.06409 4.08252 4.12854 4.20010 4.29081 4.30546 4.32051 4.41527 4.51392 4.61855 4.65244 4.69660 4.76887 4.86612 4.93243 5.03579 5.14170 5.20791 5.26362 5.34777 5.37658 5.43304 5.54908 5.67597 5.81398 5.96427 6.24310 6.31070 6.40145 7.05056 7.11649 7.31049 8.05904 8.33682 9.25774 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.004180 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.958043 B = 6697.143584 C = 8469.346436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.057 0.943 4 C -0.110 4.110 5 C -0.131 4.131 6 C 0.097 3.903 7 N -0.596 5.596 8 C 0.484 3.516 9 O -0.563 6.563 10 C 0.104 3.896 11 N -0.568 5.568 12 C 0.518 3.482 13 O -0.499 6.499 14 C 0.075 3.925 15 N -0.710 5.710 16 C 0.698 3.302 17 O -0.584 6.584 18 C 0.154 3.846 19 H 0.067 0.933 20 C 0.176 3.824 21 N -0.741 5.741 22 C -0.241 4.241 23 H 0.057 0.943 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.971 3.029 27 H -0.285 1.285 28 H -0.287 1.287 29 H -0.277 1.277 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.172 0.828 43 H 0.454 0.546 44 H 0.017 0.983 45 H 0.012 0.988 46 H 0.373 0.627 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -26.981 5.430 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.169 4.169 6 C -0.024 4.024 7 N -0.330 5.330 8 C 0.272 3.728 9 O -0.442 6.442 10 C -0.021 4.021 11 N -0.313 5.313 12 C 0.307 3.693 13 O -0.371 6.371 14 C -0.051 4.051 15 N -0.375 5.375 16 C 0.399 3.601 17 O -0.460 6.460 18 C 0.050 3.950 19 H 0.085 0.915 20 C 0.050 3.950 21 N -0.386 5.386 22 C -0.373 4.373 23 H 0.075 0.925 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.800 3.200 27 H -0.212 1.212 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.171 0.829 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.189 0.811 43 H 0.301 0.699 44 H 0.035 0.965 45 H 0.029 0.971 46 H 0.205 0.795 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.704 -26.550 5.157 27.453 hybrid contribution -0.400 1.648 -0.808 1.878 sum -5.104 -24.903 4.350 25.790 Atomic orbital electron populations 1.21690 0.95458 1.01118 1.00451 1.21355 0.96195 0.98918 0.94821 0.92428 1.21552 1.00932 0.96358 0.95865 1.21975 1.01504 0.94975 0.98423 1.22240 1.02208 0.95450 0.82501 1.48144 1.55359 1.10361 1.19108 1.21494 0.78169 0.89792 0.83384 1.90828 1.58034 1.64877 1.30428 1.21699 1.00438 0.92931 0.87062 1.45985 1.09841 1.56223 1.19234 1.21626 0.89534 0.74781 0.83322 1.90811 1.16577 1.51086 1.78610 1.22722 0.80523 1.05937 0.95912 1.45336 1.12897 1.64009 1.15249 1.16020 0.81522 0.78565 0.84035 1.90997 1.56393 1.49058 1.49587 1.21243 0.97983 0.80365 0.95445 0.91514 1.21082 0.96190 0.82852 0.94843 1.42644 1.56047 1.05205 1.34669 1.19425 1.20978 0.91036 1.05828 0.92534 1.25473 1.01154 0.97986 1.01615 1.69798 1.40318 1.12998 1.38505 0.85175 0.77455 0.78437 0.78922 1.21214 1.21265 1.20233 0.92134 0.92084 0.96040 0.90991 0.90694 0.91493 0.87077 0.86576 0.89152 0.82874 0.83796 0.83879 0.81131 0.69890 0.96483 0.97054 0.79460 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 8.20 71.98 0.59 -3.94 16 2 C -0.09 -3.09 2.53 -10.71 -0.03 -3.12 16 3 H 0.06 2.30 7.07 -2.39 -0.02 2.28 16 4 C -0.11 -2.38 5.43 30.62 0.17 -2.22 16 5 C -0.13 -1.99 5.74 30.67 0.18 -1.81 16 6 C 0.10 1.51 6.35 86.37 0.55 2.06 16 7 N -0.60 -16.62 2.41 -795.04 -1.92 -18.54 16 8 C 0.48 15.26 7.60 87.66 0.67 15.93 16 9 O -0.56 -24.13 11.99 -3.04 -0.04 -24.16 16 10 C 0.10 2.17 4.54 85.63 0.39 2.56 16 11 N -0.57 -12.98 2.09 -777.22 -1.63 -14.61 16 12 C 0.52 10.55 8.31 87.94 0.73 11.28 16 13 O -0.50 -13.03 17.76 -2.90 -0.05 -13.08 16 14 C 0.08 0.74 7.97 85.76 0.68 1.42 16 15 N -0.71 -10.02 6.58 -480.30 -3.16 -13.18 16 16 C 0.70 16.98 8.62 179.44 1.55 18.53 16 17 O -0.58 -18.99 17.48 -3.84 -0.07 -19.06 16 18 C 0.15 5.61 2.78 44.97 0.12 5.73 16 19 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 20 C 0.18 8.67 3.59 86.38 0.31 8.98 16 21 N -0.74 -42.27 5.27 -343.47 -1.81 -44.08 16 22 C -0.24 -15.06 9.99 84.03 0.84 -14.22 16 23 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 24 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 25 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 26 Si 0.97 49.63 29.55 68.60 2.03 51.66 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 30 H 0.06 1.90 5.97 -2.39 -0.01 1.89 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.02 0.93 6.39 -2.39 -0.02 0.91 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.14 6.33 -2.39 -0.02 1.12 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.99 5.93 -2.39 -0.01 0.98 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.15 2.15 7.58 -2.39 -0.02 2.13 16 40 H 0.14 2.41 7.63 -2.39 -0.02 2.40 16 41 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.17 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.45 4.04 8.96 -92.71 -0.83 3.21 16 44 H 0.02 0.96 6.26 -2.39 -0.01 0.94 16 45 H 0.01 0.62 5.52 -2.39 -0.01 0.61 16 46 H 0.37 21.71 6.65 -92.70 -0.62 21.10 16 47 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -93.29 370.22 0.44 -92.86 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.42 Total: 26.29 kcal Atomic # 6 Polarization: 30.12 SS G_CDS: 7.21 Total: 37.33 kcal Atomic # 7 Polarization: -143.59 SS G_CDS: -8.23 Total: -151.83 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -0.16 Total: -56.30 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -93.29 0.44 -92.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271749974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -93.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds