Wall clock time and date at job start Tue Mar 31 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64158 * 2 1 4 4 C 1.54316 * 110.87319 * 236.74680 * 2 1 3 5 5 N 1.47020 * 107.27568 * 219.37341 * 4 2 1 6 6 C 1.34776 * 125.65281 * 178.97789 * 5 4 2 7 7 O 1.21285 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47186 * 180.02562 * 8 6 5 10 10 C 1.53011 * 109.47076 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.46810 * 179.97438 * 10 9 8 12 12 C 1.34764 * 124.17607 * 269.72007 * 11 10 9 13 13 O 1.21237 * 127.15750 * 0.02562 * 12 11 10 14 14 C 1.51583 * 105.68321 * 179.97438 * 12 11 10 15 15 N 1.47307 * 103.59350 * 0.32329 * 14 12 11 16 16 C 1.33792 * 124.17539 * 90.02804 * 11 10 9 17 17 O 1.21531 * 123.77615 * 359.95688 * 16 11 10 18 18 C 1.47422 * 108.70191 * 358.94070 * 5 4 2 19 19 C 1.54917 * 104.83074 * 24.12901 * 18 5 4 20 20 H 1.08996 * 111.00376 * 204.87436 * 19 18 5 21 21 N 1.46501 * 111.00397 * 81.06403 * 19 18 5 22 22 C 1.36932 * 120.00032 * 86.45261 * 21 19 18 23 23 H 1.08003 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38820 * 120.00065 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99791 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00026 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47349 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47243 * 120.00103 * 26 24 22 29 29 H 1.48502 * 109.46998 * 240.00509 * 26 24 22 30 30 H 1.09004 * 109.47379 * 296.86359 * 1 2 3 31 31 H 1.08996 * 109.47147 * 56.85706 * 1 2 3 32 32 H 1.09001 * 109.47442 * 176.86442 * 1 2 3 33 33 H 1.09000 * 109.88340 * 338.79687 * 4 2 1 34 34 H 1.09005 * 109.88355 * 99.80448 * 4 2 1 35 35 H 1.09004 * 109.47135 * 299.99842 * 8 6 5 36 36 H 1.08993 * 109.47035 * 59.99497 * 8 6 5 37 37 H 1.08995 * 109.47224 * 299.99440 * 9 8 6 38 38 H 1.08993 * 109.47602 * 59.99773 * 9 8 6 39 39 H 1.08995 * 109.46730 * 299.99856 * 10 9 8 40 40 H 1.08993 * 109.46997 * 59.99517 * 10 9 8 41 41 H 1.09002 * 110.76615 * 241.71415 * 14 12 11 42 42 H 1.09002 * 110.56141 * 118.83169 * 14 12 11 43 43 H 0.96999 * 126.69193 * 179.77149 * 15 14 12 44 44 H 1.08998 * 110.36873 * 265.28987 * 18 5 4 45 45 H 1.09005 * 110.36491 * 142.96394 * 18 5 4 46 46 H 0.96995 * 119.99785 * 266.45481 * 21 19 18 47 47 H 0.97003 * 119.99930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4842 7 8 3.7295 -2.5529 -2.6535 8 6 5.1767 -3.0918 -0.8689 9 6 5.8532 -3.9662 -1.9265 10 6 7.0479 -4.6899 -1.3019 11 7 7.6953 -5.5275 -2.3145 12 6 7.3708 -6.8136 -2.5533 13 8 6.5202 -7.4705 -1.9923 14 6 8.2898 -7.2674 -3.6701 15 7 9.1069 -6.0747 -3.9524 16 6 8.6856 -5.1120 -3.1124 17 8 9.1533 -3.9908 -3.0809 18 6 3.4652 -1.2447 0.6914 19 6 2.0789 -0.7933 1.2152 20 1 2.1819 -0.1495 2.0886 21 7 1.2294 -1.9486 1.5153 22 6 1.3000 -2.5498 2.7435 23 1 1.9817 -2.1721 3.4912 24 6 0.4947 -3.6441 3.0280 25 7 -0.3364 -4.1040 2.1170 26 14 0.5905 -4.4638 4.7038 27 1 1.5958 -3.7616 5.5416 28 1 -0.7379 -4.3975 5.3640 29 1 0.9906 -5.8842 4.5378 30 1 -0.3634 0.4644 0.9168 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0562 33 1 1.3190 -1.4773 -1.5769 34 1 2.3750 -0.1018 -1.9973 35 1 5.8905 -2.3585 -0.4935 36 1 4.8321 -3.7177 -0.0458 37 1 5.1397 -4.6995 -2.3022 38 1 6.1979 -3.3400 -2.7494 39 1 7.7612 -3.9562 -0.9265 40 1 6.7036 -5.3160 -0.4788 41 1 7.7151 -7.5558 -4.5503 42 1 8.9187 -8.0930 -3.3367 43 1 9.8113 -5.9982 -4.6149 44 1 4.1929 -0.4409 0.8030 45 1 3.7992 -2.1364 1.2219 46 1 0.6169 -2.2875 0.8439 47 1 -0.8989 -4.8689 2.3157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274290717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:01 Heat of formation + Delta-G solvation = -64.791537 kcal Electronic energy + Delta-G solvation = -29651.517487 eV Core-core repulsion = 25449.516791 eV Total energy + Delta-G solvation = -4202.000695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58031 -39.76636 -38.82670 -37.69603 -36.37443 -35.82449 -33.85554 -32.98273 -32.25016 -30.49347 -28.43953 -27.79689 -27.57535 -25.72239 -23.89683 -23.21636 -22.80687 -21.68924 -20.58475 -19.23889 -18.84838 -18.31138 -17.49264 -17.37439 -17.01725 -16.47760 -16.02528 -15.83777 -15.58055 -15.28375 -14.70336 -14.48993 -14.46989 -14.28670 -14.02883 -13.92579 -13.60788 -13.06283 -12.95584 -12.76430 -12.55548 -12.17197 -12.07872 -11.87173 -11.69280 -11.52984 -11.18446 -11.11265 -10.94411 -10.85320 -10.74049 -10.51931 -10.47031 -10.25771 -10.07404 -9.92750 -9.85855 -9.67461 -9.48600 -9.04294 -8.18681 -7.03846 -5.83896 -3.13825 1.34199 1.89546 2.70415 2.79692 3.01869 3.38980 3.41515 3.44467 3.47414 3.66553 4.43794 4.52005 4.57963 4.65036 4.77060 4.89818 4.97251 5.11269 5.17167 5.21862 5.31681 5.34894 5.41881 5.54333 5.55585 5.62997 5.67064 5.78274 5.92677 6.00351 6.02839 6.19229 6.20677 6.23316 6.35125 6.36936 6.37844 6.50904 6.63920 6.74319 6.78734 6.92016 7.08427 7.63343 7.79850 7.97019 8.33787 8.55279 9.45765 10.01513 10.36062 11.38173 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002825 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.396594 B = 9908.802463 C =11553.732243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.530 3.470 7 O -0.557 6.557 8 C -0.131 4.131 9 C -0.117 4.117 10 C 0.118 3.882 11 N -0.575 5.575 12 C 0.517 3.483 13 O -0.461 6.461 14 C 0.062 3.938 15 N -0.731 5.731 16 C 0.701 3.299 17 O -0.541 6.541 18 C 0.068 3.932 19 C 0.171 3.829 20 H 0.070 0.930 21 N -0.710 5.710 22 C -0.246 4.246 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.927 5.927 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.441 0.559 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.691 -0.764 -10.250 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.319 3.681 7 O -0.437 6.437 8 C -0.172 4.172 9 C -0.156 4.156 10 C -0.003 4.003 11 N -0.321 5.321 12 C 0.304 3.696 13 O -0.330 6.330 14 C -0.065 4.065 15 N -0.397 5.397 16 C 0.402 3.598 17 O -0.414 6.414 18 C -0.059 4.059 19 C 0.058 3.942 20 H 0.088 0.912 21 N -0.351 5.351 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.285 0.715 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.310 -0.696 -10.302 20.156 hybrid contribution 0.132 -0.707 0.423 0.835 sum 17.442 -1.403 -9.879 20.094 Atomic orbital electron populations 1.21601 0.93513 1.02967 1.00890 1.22486 0.97060 0.98509 0.95241 0.90277 1.21915 0.87902 0.94368 0.96398 1.48325 1.29298 1.44001 1.11866 1.20106 0.83587 0.78566 0.85870 1.90661 1.71888 1.64310 1.16796 1.21476 0.96189 0.99763 0.99744 1.21636 0.96172 0.99272 0.98545 1.21800 0.95296 0.94239 0.88966 1.46390 1.34941 1.14318 1.36456 1.20914 0.83397 0.81492 0.83792 1.90880 1.30943 1.59108 1.52038 1.22477 0.94367 0.90514 0.99185 1.45426 1.40998 1.12116 1.41123 1.15886 0.79709 0.84749 0.79486 1.91027 1.60520 1.18610 1.71254 1.23420 1.01204 1.00730 0.80501 1.21362 0.88633 0.89917 0.94243 0.91176 1.42397 1.45364 1.32260 1.15066 1.19250 1.18563 1.09096 0.90819 0.90967 1.24756 0.98968 0.98875 0.97915 1.69669 1.27306 1.27130 1.33373 0.86147 0.77239 0.79280 0.83639 1.20493 1.21863 1.21861 0.92120 0.93705 0.91269 0.91578 0.92480 0.88839 0.88087 0.90531 0.90552 0.88342 0.88275 0.85830 0.85927 0.71525 0.92611 0.90084 0.77727 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.72 37.16 0.32 -1.76 16 2 C -0.11 -1.74 3.41 -88.79 -0.30 -2.05 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.96 6.46 -3.07 -0.02 1.94 16 5 N -0.60 -10.44 3.33 -170.52 -0.57 -11.01 16 6 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 7 O -0.56 -11.71 16.31 5.55 0.09 -11.62 16 8 C -0.13 -1.80 4.71 -27.89 -0.13 -1.93 16 9 C -0.12 -1.56 4.83 -26.73 -0.13 -1.69 16 10 C 0.12 1.28 5.70 -4.04 -0.02 1.25 16 11 N -0.57 -6.05 2.60 -120.73 -0.31 -6.36 16 12 C 0.52 5.03 8.31 -10.56 -0.09 4.94 16 13 O -0.46 -6.14 17.75 5.59 0.10 -6.04 16 14 C 0.06 0.29 7.97 -4.32 -0.03 0.26 16 15 N -0.73 -4.35 6.58 -65.74 -0.43 -4.78 16 16 C 0.70 7.35 8.62 -88.02 -0.76 6.59 16 17 O -0.54 -7.61 17.48 5.34 0.09 -7.51 16 18 C 0.07 1.09 6.38 -2.53 -0.02 1.08 16 19 C 0.17 3.06 3.44 -65.78 -0.23 2.84 16 20 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 21 N -0.71 -16.41 4.74 -51.34 -0.24 -16.65 16 22 C -0.25 -6.36 9.98 -15.06 -0.15 -6.52 16 23 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 26 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 33 H 0.07 1.24 7.78 -51.93 -0.40 0.84 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 1.38 7.85 -51.93 -0.41 0.97 16 37 H 0.08 1.17 8.10 -51.93 -0.42 0.74 16 38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 40 H 0.10 1.02 8.00 -51.93 -0.42 0.61 16 41 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.44 1.48 8.96 -40.82 -0.37 1.12 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 46 H 0.39 9.82 6.09 -40.82 -0.25 9.57 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -36.00 390.61 -8.58 -44.59 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.16 Total: 9.38 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -1.74 Total: 14.02 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.83 Total: -65.32 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.28 Total: -25.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.00 -8.58 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274290717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.205 kcal (2) G-P(sol) polarization free energy of solvation -36.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds