Wall clock time and date at job start Tue Mar 31 2020 22:19:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08993 * 109.47227 * 2 1
4 4 C 1.53006 * 109.46802 * 239.99925 * 2 1 3
5 5 C 1.53003 * 109.46753 * 175.00419 * 4 2 1
6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2
7 7 N 1.46495 * 109.47340 * 180.02562 * 6 5 4
8 8 C 1.36937 * 120.00070 * 180.02562 * 7 6 5
9 9 H 1.08001 * 120.00142 * 359.97438 * 8 7 6
10 10 C 1.38809 * 119.99743 * 180.02562 * 8 7 6
11 11 N 1.31617 * 120.00446 * 359.97438 * 10 8 7
12 12 Si 1.86804 * 119.99883 * 180.02562 * 10 8 7
13 13 H 1.48492 * 109.47168 * 89.99830 * 12 10 8
14 14 H 1.48498 * 109.47090 * 209.99946 * 12 10 8
15 15 H 1.48505 * 109.46993 * 329.99744 * 12 10 8
16 16 N 1.46497 * 109.46902 * 120.00636 * 2 1 3
17 17 C 1.34785 * 119.99775 * 274.99337 * 16 2 1
18 18 O 1.21281 * 119.99896 * 0.02562 * 17 16 2
19 19 C 1.50695 * 120.00388 * 179.97438 * 17 16 2
20 20 N 1.46497 * 109.47389 * 180.02562 * 19 17 16
21 21 C 1.36831 * 119.68826 * 90.00457 * 20 19 17
22 22 C 1.35028 * 119.68141 * 179.97438 * 21 20 19
23 23 C 1.41570 * 119.11275 * 0.28010 * 22 21 20
24 24 O 1.21784 * 120.30658 * 179.72201 * 23 22 21
25 25 N 1.34839 * 119.38870 * 359.40796 * 23 22 21
26 26 C 1.46494 * 119.87137 * 180.30098 * 25 23 22
27 27 C 1.34544 * 119.68761 * 269.98022 * 20 19 17
28 28 O 1.21586 * 119.53485 * 0.02562 * 27 20 19
29 29 H 1.09004 * 109.46926 * 59.99346 * 1 2 3
30 30 H 1.08993 * 109.47227 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47182 * 300.00241 * 1 2 3
32 32 H 1.09001 * 109.46970 * 295.00089 * 4 2 1
33 33 H 1.09000 * 109.46934 * 55.00411 * 4 2 1
34 34 H 1.09000 * 109.46689 * 299.99906 * 5 4 2
35 35 H 1.09001 * 109.46937 * 60.00043 * 5 4 2
36 36 H 1.09002 * 109.47052 * 300.00418 * 6 5 4
37 37 H 1.09004 * 109.47132 * 59.99405 * 6 5 4
38 38 H 0.97003 * 119.99903 * 359.97438 * 7 6 5
39 39 H 0.96997 * 120.00235 * 179.97438 * 11 10 8
40 40 H 0.96996 * 120.01048 * 94.99282 * 16 2 1
41 41 H 1.09011 * 109.46804 * 60.00009 * 19 17 16
42 42 H 1.09005 * 109.47486 * 300.00938 * 19 17 16
43 43 H 1.07994 * 120.16126 * 359.95571 * 21 20 19
44 44 H 1.08002 * 120.43848 * 179.97438 * 22 21 20
45 45 H 1.09001 * 109.47005 * 270.31830 * 26 25 23
46 46 H 1.09005 * 109.47424 * 30.31596 * 26 25 23
47 47 H 1.09000 * 109.47321 * 150.31830 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 3.5648 -0.6134 -1.3137
6 6 4.0748 -1.3341 -2.5633
7 7 5.5348 -1.2314 -2.6247
8 6 6.2185 -1.8049 -3.6634
9 1 5.6814 -2.3333 -4.4371
10 6 7.6020 -1.7079 -3.7212
11 7 8.2567 -1.0645 -2.7780
12 14 8.5346 -2.4896 -5.1385
13 1 8.6679 -1.5079 -6.2446
14 1 9.8846 -2.9005 -4.6760
15 1 7.7927 -3.6819 -5.6215
16 7 2.0183 -0.6907 1.1961
17 6 2.1471 -0.0184 2.3571
18 8 1.8583 1.1583 2.4117
19 6 2.6488 -0.7289 3.5877
20 7 2.6977 0.2123 4.7093
21 6 1.6038 0.3606 5.5177
22 6 1.6492 1.2278 6.5518
23 6 2.8322 1.9729 6.7744
24 8 2.8952 2.7647 7.6975
25 7 3.8908 1.7931 5.9587
26 6 5.1224 2.5538 6.1834
27 6 3.8181 0.9223 4.9350
28 8 4.7785 0.7748 4.2042
29 1 -0.3633 0.5140 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.7516 -1.7716 -1.2056
33 1 1.6054 -0.2617 -2.1370
34 1 3.8532 0.4368 -1.3573
35 1 3.9994 -1.0730 -0.4259
36 1 3.7863 -2.3844 -2.5201
37 1 3.6401 -0.8742 -3.4508
38 1 6.0173 -0.7565 -1.9299
39 1 9.2235 -0.9971 -2.8182
40 1 2.2489 -1.6319 1.1526
41 1 3.6480 -1.1216 3.3985
42 1 1.9759 -1.5508 3.8326
43 1 0.7083 -0.2129 5.3295
44 1 0.7927 1.3548 7.1973
45 1 5.0775 3.4904 5.6277
46 1 5.2288 2.7672 7.2471
47 1 5.9774 1.9698 5.8427
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001277200290.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:19:14
Heat of formation + Delta-G solvation = -59.983429 kcal
Electronic energy + Delta-G solvation = -29176.935176 eV
Core-core repulsion = 24975.142976 eV
Total energy + Delta-G solvation = -4201.792200 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.66393 -40.26411 -39.11906 -37.64316 -36.76124 -35.46364 -34.89203 -32.90578
-32.33389 -31.24128 -29.50813 -28.70323 -27.74046 -25.71248 -24.20376 -23.87927
-23.06595 -21.58781 -20.84730 -20.76792 -19.58981 -18.27933 -18.06263 -17.34774
-17.02847 -16.87813 -16.49775 -15.77016 -15.57492 -15.38091 -14.82186 -14.66957
-14.44428 -14.12270 -14.04325 -13.92672 -13.82137 -13.55889 -13.43965 -13.07195
-12.94173 -12.57651 -12.47342 -12.33787 -12.18361 -12.16390 -11.36566 -11.25385
-11.17023 -10.86857 -10.84061 -10.55975 -10.51451 -10.46298 -10.25717 -10.02998
-10.02093 -9.69847 -9.31249 -8.96350 -8.86903 -6.91660 -5.75433 -3.04698
0.63370 1.44020 1.72095 2.24240 2.59153 2.86637 3.22767 3.43492
3.48055 3.50261 3.94233 4.11112 4.29099 4.43363 4.54781 4.68356
4.70147 4.83421 4.93681 5.05574 5.06583 5.13032 5.16685 5.29820
5.33343 5.45623 5.46797 5.53642 5.57027 5.64339 5.70174 5.87155
5.95632 6.01016 6.03490 6.14874 6.30932 6.32244 6.38261 6.83913
6.86357 6.87068 7.15985 7.22413 7.60501 7.69641 7.87020 8.43281
9.53981 10.12967 10.46993 11.47370
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012900 B = 0.002313 C = 0.002017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.059874 B =12103.894014 C =13875.745249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.141 3.859
3 H 0.089 0.911
4 C -0.123 4.123
5 C -0.126 4.126
6 C 0.153 3.847
7 N -0.735 5.735
8 C -0.241 4.241
9 H 0.070 0.930
10 C -0.015 4.015
11 N -0.933 5.933
12 Si 0.907 3.093
13 H -0.290 1.290
14 H -0.291 1.291
15 H -0.282 1.282
16 N -0.714 5.714
17 C 0.499 3.501
18 O -0.529 6.529
19 C 0.088 3.912
20 N -0.518 5.518
21 C 0.184 3.816
22 C -0.297 4.297
23 C 0.548 3.452
24 O -0.520 6.520
25 N -0.555 5.555
26 C 0.079 3.921
27 C 0.697 3.303
28 O -0.526 6.526
29 H 0.067 0.933
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.068 0.932
33 H 0.080 0.920
34 H 0.062 0.938
35 H 0.061 0.939
36 H 0.016 0.984
37 H 0.017 0.983
38 H 0.384 0.616
39 H 0.255 0.745
40 H 0.404 0.596
41 H 0.136 0.864
42 H 0.129 0.871
43 H 0.177 0.823
44 H 0.172 0.828
45 H 0.074 0.926
46 H 0.093 0.907
47 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.481 -0.757 18.884 27.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.037 3.963
3 H 0.107 0.893
4 C -0.161 4.161
5 C -0.164 4.164
6 C 0.026 3.974
7 N -0.379 5.379
8 C -0.372 4.372
9 H 0.088 0.912
10 C -0.211 4.211
11 N -0.581 5.581
12 Si 0.738 3.262
13 H -0.217 1.217
14 H -0.217 1.217
15 H -0.208 1.208
16 N -0.366 5.366
17 C 0.283 3.717
18 O -0.405 6.405
19 C -0.037 4.037
20 N -0.238 5.238
21 C 0.060 3.940
22 C -0.324 4.324
23 C 0.345 3.655
24 O -0.396 6.396
25 N -0.299 5.299
26 C -0.062 4.062
27 C 0.400 3.600
28 O -0.398 6.398
29 H 0.086 0.914
30 H 0.076 0.924
31 H 0.076 0.924
32 H 0.087 0.913
33 H 0.098 0.902
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.034 0.966
37 H 0.034 0.966
38 H 0.217 0.783
39 H 0.065 0.935
40 H 0.238 0.762
41 H 0.154 0.846
42 H 0.147 0.853
43 H 0.194 0.806
44 H 0.189 0.811
45 H 0.093 0.907
46 H 0.111 0.889
47 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -18.943 0.352 18.779 26.676
hybrid contribution 0.753 -0.698 -0.703 1.244
sum -18.190 -0.347 18.076 25.647
Atomic orbital electron populations
1.22163 0.95228 1.02035 1.02505 1.21097 0.93637 0.97881 0.83646
0.89283 1.21858 0.97000 1.00756 0.96479 1.21741 0.93503 1.01558
0.99611 1.20637 0.86264 0.96380 0.94144 1.42387 1.00170 1.66315
1.29013 1.19229 0.89437 1.27284 1.01272 0.91226 1.24765 0.96480
1.01234 0.98619 1.69664 1.07225 1.46957 1.34274 0.86186 0.79394
0.78793 0.81794 1.21710 1.21745 1.20779 1.46002 1.66903 1.14281
1.09411 1.20679 0.78204 0.87804 0.85006 1.90764 1.49472 1.15470
1.84821 1.21782 1.07252 0.90826 0.83877 1.44261 1.12057 1.39423
1.28019 1.22299 0.89960 0.94197 0.87534 1.21878 1.00970 1.04753
1.04837 1.17377 0.83337 0.83149 0.81656 1.90875 1.82583 1.36193
1.29940 1.46319 1.17393 1.38626 1.27576 1.21930 0.84174 0.96270
1.03837 1.15804 0.83260 0.79349 0.81634 1.91085 1.34935 1.67031
1.46748 0.91409 0.92400 0.92420 0.91290 0.90164 0.91963 0.92012
0.96598 0.96558 0.78293 0.93477 0.76170 0.84611 0.85310 0.80590
0.81091 0.90737 0.88875 0.88851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16
2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16
3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16
4 C -0.12 -1.30 4.75 -26.73 -0.13 -1.43 16
5 C -0.13 -1.92 5.22 -26.73 -0.14 -2.05 16
6 C 0.15 3.01 6.26 -4.04 -0.03 2.99 16
7 N -0.73 -18.94 5.60 -59.91 -0.34 -19.28 16
8 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16
9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16
10 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16
11 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16
12 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16
13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
16 N -0.71 -6.06 4.53 -53.80 -0.24 -6.30 16
17 C 0.50 4.94 7.86 -10.98 -0.09 4.85 16
18 O -0.53 -7.55 16.09 5.56 0.09 -7.46 16
19 C 0.09 0.57 5.82 -5.20 -0.03 0.54 16
20 N -0.52 -4.45 2.10 -122.83 -0.26 -4.71 16
21 C 0.18 1.06 10.38 -16.46 -0.17 0.89 16
22 C -0.30 -2.26 10.00 -39.45 -0.39 -2.65 16
23 C 0.55 6.29 7.44 -14.96 -0.11 6.18 16
24 O -0.52 -7.38 16.70 5.11 0.09 -7.29 16
25 N -0.55 -6.48 2.96 -131.50 -0.39 -6.87 16
26 C 0.08 0.80 10.12 59.84 0.61 1.41 16
27 C 0.70 8.50 8.11 -87.29 -0.71 7.79 16
28 O -0.53 -8.06 15.35 5.29 0.08 -7.98 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
35 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16
36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16
37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
38 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16
39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
40 H 0.40 2.42 8.60 -40.82 -0.35 2.07 16
41 H 0.14 0.94 7.38 -51.92 -0.38 0.56 16
42 H 0.13 0.16 8.03 -51.93 -0.42 -0.26 16
43 H 0.18 0.20 8.06 -52.49 -0.42 -0.22 16
44 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16
45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
46 H 0.09 0.84 7.43 -51.93 -0.39 0.46 16
47 H 0.09 0.92 7.39 -51.93 -0.38 0.53 16
LS Contribution 398.15 15.07 6.00 6.00
Total: -1.00 -40.07 398.15 -7.75 -47.82
By element:
Atomic # 1 Polarization: 12.53 SS G_CDS: -7.23 Total: 5.30 kcal
Atomic # 6 Polarization: 12.51 SS G_CDS: -1.26 Total: 11.25 kcal
Atomic # 7 Polarization: -64.70 SS G_CDS: -0.50 Total: -65.20 kcal
Atomic # 8 Polarization: -22.99 SS G_CDS: 0.26 Total: -22.73 kcal
Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -40.07 -7.75 -47.82 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277200290.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.165 kcal
(2) G-P(sol) polarization free energy of solvation -40.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.818 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds