Wall clock time and date at job start Tue Mar 31 2020 22:19:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08993 * 109.47227 * 2 1
4 4 C 1.53006 * 109.46802 * 239.99925 * 2 1 3
5 5 C 1.53003 * 109.46753 * 175.00419 * 4 2 1
6 6 C 1.53001 * 109.47042 * 180.02562 * 5 4 2
7 7 N 1.46495 * 109.47340 * 180.02562 * 6 5 4
8 8 C 1.36937 * 120.00070 * 180.02562 * 7 6 5
9 9 H 1.08001 * 120.00142 * 359.97438 * 8 7 6
10 10 C 1.38809 * 119.99743 * 180.02562 * 8 7 6
11 11 N 1.31617 * 120.00446 * 359.97438 * 10 8 7
12 12 Si 1.86804 * 119.99883 * 180.02562 * 10 8 7
13 13 H 1.48492 * 109.47168 * 89.99830 * 12 10 8
14 14 H 1.48498 * 109.47090 * 209.99946 * 12 10 8
15 15 H 1.48505 * 109.46993 * 329.99744 * 12 10 8
16 16 N 1.46497 * 109.46902 * 120.00636 * 2 1 3
17 17 C 1.34785 * 119.99775 * 274.99337 * 16 2 1
18 18 O 1.21281 * 119.99896 * 0.02562 * 17 16 2
19 19 C 1.50695 * 120.00388 * 179.97438 * 17 16 2
20 20 N 1.46497 * 109.47389 * 180.02562 * 19 17 16
21 21 C 1.36831 * 119.68826 * 90.00457 * 20 19 17
22 22 C 1.35028 * 119.68141 * 179.97438 * 21 20 19
23 23 C 1.41570 * 119.11275 * 0.28010 * 22 21 20
24 24 O 1.21784 * 120.30658 * 179.72201 * 23 22 21
25 25 N 1.34839 * 119.38870 * 359.40796 * 23 22 21
26 26 C 1.46494 * 119.87137 * 180.30098 * 25 23 22
27 27 C 1.34544 * 119.68761 * 269.98022 * 20 19 17
28 28 O 1.21586 * 119.53485 * 0.02562 * 27 20 19
29 29 H 1.09004 * 109.46926 * 59.99346 * 1 2 3
30 30 H 1.08993 * 109.47227 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47182 * 300.00241 * 1 2 3
32 32 H 1.09001 * 109.46970 * 295.00089 * 4 2 1
33 33 H 1.09000 * 109.46934 * 55.00411 * 4 2 1
34 34 H 1.09000 * 109.46689 * 299.99906 * 5 4 2
35 35 H 1.09001 * 109.46937 * 60.00043 * 5 4 2
36 36 H 1.09002 * 109.47052 * 300.00418 * 6 5 4
37 37 H 1.09004 * 109.47132 * 59.99405 * 6 5 4
38 38 H 0.97003 * 119.99903 * 359.97438 * 7 6 5
39 39 H 0.96997 * 120.00235 * 179.97438 * 11 10 8
40 40 H 0.96996 * 120.01048 * 94.99282 * 16 2 1
41 41 H 1.09011 * 109.46804 * 60.00009 * 19 17 16
42 42 H 1.09005 * 109.47486 * 300.00938 * 19 17 16
43 43 H 1.07994 * 120.16126 * 359.95571 * 21 20 19
44 44 H 1.08002 * 120.43848 * 179.97438 * 22 21 20
45 45 H 1.09001 * 109.47005 * 270.31830 * 26 25 23
46 46 H 1.09005 * 109.47424 * 30.31596 * 26 25 23
47 47 H 1.09000 * 109.47321 * 150.31830 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2493
5 6 3.5648 -0.6134 -1.3137
6 6 4.0748 -1.3341 -2.5633
7 7 5.5348 -1.2314 -2.6247
8 6 6.2185 -1.8049 -3.6634
9 1 5.6814 -2.3333 -4.4371
10 6 7.6020 -1.7079 -3.7212
11 7 8.2567 -1.0645 -2.7780
12 14 8.5346 -2.4896 -5.1385
13 1 8.6679 -1.5079 -6.2446
14 1 9.8846 -2.9005 -4.6760
15 1 7.7927 -3.6819 -5.6215
16 7 2.0183 -0.6907 1.1961
17 6 2.1471 -0.0184 2.3571
18 8 1.8583 1.1583 2.4117
19 6 2.6488 -0.7289 3.5877
20 7 2.6977 0.2123 4.7093
21 6 1.6038 0.3606 5.5177
22 6 1.6492 1.2278 6.5518
23 6 2.8322 1.9729 6.7744
24 8 2.8952 2.7647 7.6975
25 7 3.8908 1.7931 5.9587
26 6 5.1224 2.5538 6.1834
27 6 3.8181 0.9223 4.9350
28 8 4.7785 0.7748 4.2042
29 1 -0.3633 0.5140 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.7516 -1.7716 -1.2056
33 1 1.6054 -0.2617 -2.1370
34 1 3.8532 0.4368 -1.3573
35 1 3.9994 -1.0730 -0.4259
36 1 3.7863 -2.3844 -2.5201
37 1 3.6401 -0.8742 -3.4508
38 1 6.0173 -0.7565 -1.9299
39 1 9.2235 -0.9971 -2.8182
40 1 2.2489 -1.6319 1.1526
41 1 3.6480 -1.1216 3.3985
42 1 1.9759 -1.5508 3.8326
43 1 0.7083 -0.2129 5.3295
44 1 0.7927 1.3548 7.1973
45 1 5.0775 3.4904 5.6277
46 1 5.2288 2.7672 7.2471
47 1 5.9774 1.9698 5.8427
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001277200290.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:19:13
Heat of formation + Delta-G solvation = -89.882712 kcal
Electronic energy + Delta-G solvation = -29178.231707 eV
Core-core repulsion = 24975.142976 eV
Total energy + Delta-G solvation = -4203.088730 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.46272 -41.06281 -40.01705 -38.46867 -37.79730 -36.53900 -36.34141 -34.23539
-33.27742 -32.44674 -30.91871 -29.44892 -28.44834 -27.21620 -25.00180 -24.83666
-24.56613 -22.62821 -22.15272 -21.56008 -20.34523 -19.15867 -18.99079 -18.78930
-18.16664 -17.74055 -17.33112 -16.67122 -16.57529 -16.31920 -16.16706 -15.75779
-15.58915 -15.39718 -15.20811 -14.84627 -14.82591 -14.48347 -14.45605 -14.25307
-13.89241 -13.44138 -13.36310 -13.26595 -13.08156 -13.00561 -12.93638 -12.78162
-12.38316 -12.23908 -12.11856 -12.06101 -11.86126 -11.72395 -11.49023 -11.46190
-11.08717 -10.94819 -10.93982 -10.10167 -9.63654 -9.01718 -7.96443 -5.26249
0.03019 0.69232 0.86979 1.46035 1.48546 1.51576 1.57035 1.85325
2.17010 2.47459 2.55078 3.37238 3.46990 3.56508 3.64573 3.77300
3.94841 4.00431 4.11766 4.13486 4.24370 4.27310 4.30300 4.31441
4.42035 4.55772 4.58836 4.59478 4.67457 4.70279 4.84844 4.86990
4.95467 5.02421 5.10631 5.14958 5.34451 5.35667 5.37915 5.43470
5.50273 5.57431 6.07270 6.25740 6.35190 6.50527 6.75788 7.19097
7.30985 8.08878 8.29992 9.27339
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012900 B = 0.002313 C = 0.002017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.059874 B =12103.894014 C =13875.745249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.144 3.856
3 H 0.053 0.947
4 C -0.109 4.109
5 C -0.114 4.114
6 C 0.150 3.850
7 N -0.752 5.752
8 C -0.246 4.246
9 H 0.079 0.921
10 C -0.081 4.081
11 N -0.973 5.973
12 Si 0.976 3.024
13 H -0.288 1.288
14 H -0.296 1.296
15 H -0.265 1.265
16 N -0.704 5.704
17 C 0.495 3.505
18 O -0.580 6.580
19 C 0.089 3.911
20 N -0.515 5.515
21 C 0.206 3.794
22 C -0.314 4.314
23 C 0.535 3.465
24 O -0.561 6.561
25 N -0.562 5.562
26 C 0.075 3.925
27 C 0.687 3.313
28 O -0.570 6.570
29 H 0.071 0.929
30 H 0.080 0.920
31 H 0.048 0.952
32 H 0.096 0.904
33 H 0.086 0.914
34 H 0.037 0.963
35 H 0.060 0.940
36 H 0.030 0.970
37 H 0.018 0.982
38 H 0.370 0.630
39 H 0.251 0.749
40 H 0.419 0.581
41 H 0.131 0.869
42 H 0.196 0.804
43 H 0.237 0.763
44 H 0.196 0.804
45 H 0.071 0.929
46 H 0.100 0.900
47 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.423 -3.589 18.368 29.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.040 3.960
3 H 0.072 0.928
4 C -0.147 4.147
5 C -0.152 4.152
6 C 0.024 3.976
7 N -0.395 5.395
8 C -0.378 4.378
9 H 0.097 0.903
10 C -0.273 4.273
11 N -0.624 5.624
12 Si 0.805 3.195
13 H -0.215 1.215
14 H -0.222 1.222
15 H -0.189 1.189
16 N -0.357 5.357
17 C 0.281 3.719
18 O -0.459 6.459
19 C -0.035 4.035
20 N -0.234 5.234
21 C 0.084 3.916
22 C -0.339 4.339
23 C 0.335 3.665
24 O -0.441 6.441
25 N -0.305 5.305
26 C -0.066 4.066
27 C 0.390 3.610
28 O -0.445 6.445
29 H 0.090 0.910
30 H 0.099 0.901
31 H 0.067 0.933
32 H 0.114 0.886
33 H 0.105 0.895
34 H 0.056 0.944
35 H 0.078 0.922
36 H 0.048 0.952
37 H 0.036 0.964
38 H 0.201 0.799
39 H 0.060 0.940
40 H 0.256 0.744
41 H 0.149 0.851
42 H 0.213 0.787
43 H 0.254 0.746
44 H 0.213 0.787
45 H 0.090 0.910
46 H 0.118 0.882
47 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -21.961 -2.543 18.242 28.662
hybrid contribution 1.616 0.180 -0.595 1.732
sum -20.344 -2.363 17.647 27.035
Atomic orbital electron populations
1.22063 0.93138 1.03422 1.02284 1.20935 0.95123 0.96077 0.83887
0.92820 1.21761 0.93100 1.02639 0.97200 1.21606 0.96885 0.99270
0.97417 1.20876 0.83010 0.97599 0.96161 1.42691 1.02688 1.65968
1.28111 1.19688 0.89981 1.26383 1.01730 0.90315 1.25656 0.97627
1.02526 1.01455 1.69837 1.07055 1.48987 1.36494 0.85095 0.77647
0.78297 0.78465 1.21505 1.22218 1.18940 1.45930 1.66176 1.14932
1.08686 1.21280 0.77269 0.87287 0.86095 1.90753 1.51838 1.17686
1.85673 1.22134 1.08487 0.91145 0.81742 1.44454 1.11637 1.38692
1.28569 1.23144 0.90172 0.93035 0.85291 1.22074 1.00077 1.05243
1.06554 1.18118 0.84179 0.83172 0.81031 1.90846 1.83284 1.38282
1.31638 1.46514 1.17871 1.38490 1.27623 1.21963 0.84219 0.96142
1.04248 1.16128 0.84047 0.79541 0.81234 1.91049 1.36799 1.68487
1.48140 0.91029 0.90088 0.93329 0.88566 0.89499 0.94416 0.92163
0.95182 0.96447 0.79854 0.94045 0.74377 0.85117 0.78690 0.74634
0.78691 0.91005 0.88162 0.88966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.02 9.48 71.98 0.68 -1.33 16
2 C 0.14 2.62 2.57 45.00 0.12 2.73 16
3 H 0.05 1.38 7.58 -2.39 -0.02 1.36 16
4 C -0.11 -2.04 4.75 30.60 0.15 -1.89 16
5 C -0.11 -3.37 5.22 30.60 0.16 -3.21 16
6 C 0.15 5.71 6.26 86.38 0.54 6.25 16
7 N -0.75 -38.96 5.60 -343.46 -1.92 -40.88 16
8 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16
9 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16
10 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16
11 N -0.97 -61.18 13.06 21.65 0.28 -60.89 16
12 Si 0.98 46.45 29.55 68.60 2.03 48.48 16
13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16
14 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16
15 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16
16 N -0.70 -10.22 4.53 -442.52 -2.00 -12.23 16
17 C 0.50 8.82 7.86 87.65 0.69 9.51 16
18 O -0.58 -16.23 16.09 -3.03 -0.05 -16.28 16
19 C 0.09 0.86 5.82 85.63 0.50 1.36 16
20 N -0.52 -7.74 2.10 -660.90 -1.39 -9.13 16
21 C 0.21 1.62 10.38 83.17 0.86 2.48 16
22 C -0.31 -4.16 10.00 22.35 0.22 -3.93 16
23 C 0.54 12.47 7.44 85.05 0.63 13.11 16
24 O -0.56 -16.60 16.70 -4.62 -0.08 -16.67 16
25 N -0.56 -13.68 2.96 -806.45 -2.39 -16.07 16
26 C 0.08 1.68 10.12 127.77 1.29 2.97 16
27 C 0.69 16.95 8.11 179.18 1.45 18.40 16
28 O -0.57 -18.20 15.35 -3.99 -0.06 -18.26 16
29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16
30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
35 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16
36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16
39 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16
40 H 0.42 3.53 8.60 -92.71 -0.80 2.73 16
41 H 0.13 1.54 7.38 -2.38 -0.02 1.53 16
42 H 0.20 -0.75 8.03 -2.38 -0.02 -0.77 16
43 H 0.24 -1.04 8.06 -2.91 -0.02 -1.07 16
44 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16
45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
46 H 0.10 2.02 7.43 -2.38 -0.02 2.00 16
47 H 0.09 2.02 7.39 -2.39 -0.02 2.00 16
Total: -1.00 -92.96 398.15 2.51 -90.45
By element:
Atomic # 1 Polarization: 22.87 SS G_CDS: -0.51 Total: 22.36 kcal
Atomic # 6 Polarization: 20.52 SS G_CDS: 8.61 Total: 29.13 kcal
Atomic # 7 Polarization: -131.78 SS G_CDS: -7.42 Total: -139.20 kcal
Atomic # 8 Polarization: -51.02 SS G_CDS: -0.19 Total: -51.21 kcal
Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal
Total: -92.96 2.51 -90.45 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277200290.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.563 kcal
(2) G-P(sol) polarization free energy of solvation -92.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds