Wall clock time and date at job start Tue Mar 31 2020 22:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46900 * 2 1 4 4 N 1.46498 * 109.46899 * 119.99556 * 2 1 3 5 5 C 1.36937 * 120.00079 * 274.99771 * 4 2 1 6 6 H 1.07996 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99657 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00160 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00120 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47463 * 89.99931 * 9 7 5 11 11 H 1.48509 * 109.46887 * 210.00031 * 9 7 5 12 12 H 1.48504 * 109.47124 * 329.99196 * 9 7 5 13 13 C 1.52999 * 109.47304 * 239.99980 * 2 1 3 14 14 H 1.09000 * 110.88012 * 302.42909 * 13 2 1 15 15 C 1.55155 * 111.00508 * 178.54395 * 13 2 1 16 16 C 1.54322 * 102.94098 * 206.38334 * 15 13 2 17 17 N 1.47019 * 107.27213 * 22.19401 * 16 15 13 18 18 C 1.34779 * 125.64958 * 181.01878 * 17 16 15 19 19 O 1.21275 * 120.00185 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99603 * 0.02707 * 18 17 16 21 21 N 1.46501 * 109.46802 * 179.97438 * 20 18 17 22 22 C 1.47319 * 126.69082 * 269.99950 * 21 20 18 23 23 C 1.51581 * 103.59290 * 179.97438 * 22 21 20 24 24 O 1.21233 * 127.15808 * 180.02562 * 23 22 21 25 25 N 1.34769 * 105.68369 * 359.74872 * 23 22 21 26 26 C 1.46506 * 124.17557 * 180.27291 * 25 23 22 27 27 C 1.33787 * 111.64565 * 0.42848 * 25 23 22 28 28 O 1.21543 * 123.77176 * 179.80520 * 27 25 23 29 29 C 1.47428 * 108.70376 * 1.28958 * 17 16 15 30 30 H 1.09009 * 109.47086 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47132 * 59.99664 * 1 2 3 32 32 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99368 * 95.00446 * 4 2 1 34 34 H 0.96994 * 120.00711 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.71471 * 88.02270 * 15 13 2 36 36 H 1.08996 * 110.72205 * 324.75371 * 15 13 2 37 37 H 1.08998 * 109.88438 * 262.77782 * 16 15 13 38 38 H 1.09000 * 110.00869 * 141.68739 * 16 15 13 39 39 H 1.09003 * 109.47263 * 60.00334 * 20 18 17 40 40 H 1.08997 * 109.47705 * 299.99638 * 20 18 17 41 41 H 1.08993 * 110.59808 * 298.50833 * 22 21 20 42 42 H 1.08997 * 110.59610 * 61.29868 * 22 21 20 43 43 H 1.08995 * 109.46865 * 270.17675 * 26 25 23 44 44 H 1.09001 * 109.47034 * 30.17505 * 26 25 23 45 45 H 1.09001 * 109.46722 * 150.17279 * 26 25 23 46 46 H 1.08997 * 110.36724 * 94.47569 * 29 17 16 47 47 H 1.08997 * 110.36503 * 216.80508 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3757 6 1 1.8919 1.0405 2.4243 7 6 2.6123 -0.6616 3.5090 8 7 2.7375 -0.0051 4.6429 9 14 3.0578 -2.4737 3.4249 10 1 4.4905 -2.6149 3.0610 11 1 2.8186 -3.1042 4.7481 12 1 2.2181 -3.1427 2.3989 13 6 2.0400 -0.7212 -1.2492 14 1 1.6547 -1.7398 -1.2943 15 6 3.5906 -0.7102 -1.3037 16 6 3.8841 -0.8160 -2.8150 17 7 2.6859 -0.3470 -3.5263 18 6 2.5343 -0.3018 -4.8647 19 8 1.4976 0.1061 -5.3441 20 6 3.6529 -0.7580 -5.7655 21 7 3.2438 -0.6115 -7.1646 22 6 2.5608 -1.6209 -7.9923 23 6 2.3909 -0.9288 -9.3301 24 8 1.8738 -1.3820 -10.3286 25 7 2.9287 0.2974 -9.1769 26 6 2.9751 1.3133 -10.2315 27 6 3.4180 0.4711 -7.9439 28 8 3.9553 1.4945 -7.5682 29 6 1.6802 0.0719 -2.5330 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0615 -0.4621 5.4347 35 1 4.0013 -1.5674 -0.7701 36 1 3.9841 0.2221 -0.8987 37 1 4.0909 -1.8526 -3.0808 38 1 4.7378 -0.1897 -3.0739 39 1 3.8799 -1.8045 -5.5615 40 1 4.5391 -0.1512 -5.5804 41 1 3.1787 -2.5125 -8.0974 42 1 1.5914 -1.8758 -7.5640 43 1 3.8966 1.2020 -10.8029 44 1 2.1190 1.1881 -10.8945 45 1 2.9442 2.3056 -9.7815 46 1 1.7502 1.1443 -2.3513 47 1 0.6787 -0.1917 -2.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279038386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:12 Heat of formation + Delta-G solvation = -44.731295 kcal Electronic energy + Delta-G solvation = -29534.053850 eV Core-core repulsion = 25332.923032 eV Total energy + Delta-G solvation = -4201.130818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70832 -40.25399 -39.01149 -38.03794 -36.50018 -35.58235 -35.42051 -32.57823 -31.26628 -30.39535 -29.73168 -27.99722 -27.58291 -26.76040 -24.48568 -23.15922 -22.68414 -21.50301 -20.87972 -19.93070 -19.51427 -18.09515 -17.85334 -17.58814 -17.13551 -17.05540 -16.35744 -16.07110 -15.67380 -15.09348 -14.98962 -14.60081 -14.51084 -14.32228 -14.13326 -13.83983 -13.71662 -13.32547 -13.16616 -13.02783 -12.90911 -12.71837 -12.62807 -12.45003 -12.25167 -11.96368 -11.62273 -11.33225 -11.05276 -10.88142 -10.68937 -10.65622 -10.59130 -10.46266 -10.30750 -10.22728 -10.00693 -9.63020 -9.36975 -8.99096 -8.80458 -7.33050 -5.81163 -3.17126 1.19734 1.54212 2.32541 2.39620 2.57096 2.91896 3.31698 3.33474 3.40800 3.57965 4.12295 4.16733 4.51822 4.53777 4.59221 4.61932 4.68339 4.75462 4.78992 4.88579 4.91438 5.08040 5.11448 5.20077 5.28929 5.34397 5.41284 5.51313 5.57256 5.73463 5.77720 5.81192 5.89114 6.04082 6.06271 6.15645 6.27669 6.37198 6.43990 6.64417 6.73640 6.90015 6.95818 7.30118 7.64056 7.89650 7.94780 8.37566 9.15763 9.87998 10.07593 11.37158 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.002086 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.007320 B =13422.735934 C =13519.214758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.884 3.116 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.081 0.919 15 C -0.119 4.119 16 C 0.093 3.907 17 N -0.614 5.614 18 C 0.506 3.494 19 O -0.534 6.534 20 C 0.139 3.861 21 N -0.610 5.610 22 C 0.065 3.935 23 C 0.527 3.473 24 O -0.472 6.472 25 N -0.579 5.579 26 C 0.088 3.912 27 C 0.706 3.294 28 O -0.536 6.536 29 C 0.115 3.885 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.643 -4.634 -27.598 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.581 5.581 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.030 4.030 17 N -0.349 5.349 18 C 0.293 3.707 19 O -0.411 6.411 20 C 0.013 3.987 21 N -0.348 5.348 22 C -0.061 4.061 23 C 0.314 3.686 24 O -0.342 6.342 25 N -0.325 5.325 26 C -0.052 4.052 27 C 0.409 3.591 28 O -0.409 6.409 29 C -0.007 4.007 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.150 -3.864 -28.043 28.483 hybrid contribution 0.269 -1.354 0.276 1.407 sum 3.419 -5.217 -27.767 28.459 Atomic orbital electron populations 1.22461 0.98732 1.00964 1.00658 1.20105 0.91988 0.95499 0.84407 0.92326 1.42728 1.79861 1.09280 1.07003 1.19047 1.36854 0.95517 0.85669 0.89212 1.24674 1.01535 0.97404 0.95569 1.69692 1.52564 1.35586 1.00280 0.86568 0.78330 0.86850 0.76838 1.21109 1.21861 1.20386 1.22757 0.95394 1.00034 0.94454 0.90105 1.22607 0.96186 1.04419 0.92480 1.22254 0.87515 0.99296 0.93902 1.48573 1.17911 1.63734 1.04650 1.20707 0.89389 0.79087 0.81546 1.90728 1.29287 1.46751 1.74293 1.21135 0.96598 1.04562 0.76372 1.46968 1.61920 1.14957 1.10970 1.22544 1.01807 0.93484 0.88278 1.20819 0.76344 0.81591 0.89822 1.90825 1.40854 1.69511 1.32997 1.46229 1.55511 1.16928 1.13808 1.21848 1.03652 0.90963 0.88787 1.15744 0.79176 0.83902 0.80323 1.91000 1.46720 1.27880 1.75326 1.22361 0.92202 0.99246 0.86884 0.92212 0.94074 0.93579 0.80726 0.93060 0.89766 0.89597 0.91318 0.91089 0.86250 0.86050 0.85681 0.85592 0.90836 0.89329 0.89087 0.90914 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.34 37.16 0.35 -2.40 16 2 C 0.19 3.23 2.41 -67.93 -0.16 3.07 16 3 H 0.06 1.05 8.04 -51.92 -0.42 0.64 16 4 N -0.75 -15.97 4.62 -53.42 -0.25 -16.22 16 5 C -0.24 -6.39 10.41 -15.06 -0.16 -6.54 16 6 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 9 Si 0.88 21.00 27.74 -169.99 -4.71 16.29 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 13 C -0.11 -1.40 2.64 -88.35 -0.23 -1.64 16 14 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.39 6.13 -24.90 -0.15 -1.55 16 16 C 0.09 0.81 6.48 -3.07 -0.02 0.79 16 17 N -0.61 -6.72 3.32 -170.38 -0.57 -7.28 16 18 C 0.51 5.79 7.92 -10.98 -0.09 5.71 16 19 O -0.53 -8.26 16.68 5.56 0.09 -8.17 16 20 C 0.14 1.02 5.82 -5.19 -0.03 0.99 16 21 N -0.61 -5.24 2.51 -181.40 -0.45 -5.69 16 22 C 0.06 0.39 7.66 -4.31 -0.03 0.36 16 23 C 0.53 4.52 8.32 -10.56 -0.09 4.43 16 24 O -0.47 -5.12 17.76 5.60 0.10 -5.03 16 25 N -0.58 -5.32 3.00 -128.16 -0.39 -5.70 16 26 C 0.09 0.60 10.73 59.85 0.64 1.24 16 27 C 0.71 7.81 8.31 -88.02 -0.73 7.08 16 28 O -0.54 -7.70 17.15 5.33 0.09 -7.61 16 29 C 0.12 1.44 5.57 -2.41 -0.01 1.43 16 30 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 31 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.36 7.57 5.66 -40.82 -0.23 7.34 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.12 0.82 8.03 -51.93 -0.42 0.40 16 41 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.51 8.01 -51.93 -0.42 0.10 16 45 H 0.09 0.63 7.86 -51.93 -0.41 0.23 16 46 H 0.07 0.95 8.01 -51.93 -0.42 0.54 16 47 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -36.86 391.56 -7.57 -44.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.34 Total: 3.77 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.82 Total: 12.98 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.88 Total: -62.55 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.28 Total: -20.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.29 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.86 -7.57 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279038386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.307 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds