Wall clock time and date at job start Tue Mar 31 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.46900 * 2 1 4 4 N 1.46498 * 109.46899 * 119.99556 * 2 1 3 5 5 C 1.36937 * 120.00079 * 274.99771 * 4 2 1 6 6 H 1.07996 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99657 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00160 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00120 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47463 * 89.99931 * 9 7 5 11 11 H 1.48509 * 109.46887 * 210.00031 * 9 7 5 12 12 H 1.48504 * 109.47124 * 329.99196 * 9 7 5 13 13 C 1.52999 * 109.47304 * 239.99980 * 2 1 3 14 14 H 1.09000 * 110.88012 * 302.42909 * 13 2 1 15 15 C 1.55155 * 111.00508 * 178.54395 * 13 2 1 16 16 C 1.54322 * 102.94098 * 206.38334 * 15 13 2 17 17 N 1.47019 * 107.27213 * 22.19401 * 16 15 13 18 18 C 1.34779 * 125.64958 * 181.01878 * 17 16 15 19 19 O 1.21275 * 120.00185 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99603 * 0.02707 * 18 17 16 21 21 N 1.46501 * 109.46802 * 179.97438 * 20 18 17 22 22 C 1.47319 * 126.69082 * 269.99950 * 21 20 18 23 23 C 1.51581 * 103.59290 * 179.97438 * 22 21 20 24 24 O 1.21233 * 127.15808 * 180.02562 * 23 22 21 25 25 N 1.34769 * 105.68369 * 359.74872 * 23 22 21 26 26 C 1.46506 * 124.17557 * 180.27291 * 25 23 22 27 27 C 1.33787 * 111.64565 * 0.42848 * 25 23 22 28 28 O 1.21543 * 123.77176 * 179.80520 * 27 25 23 29 29 C 1.47428 * 108.70376 * 1.28958 * 17 16 15 30 30 H 1.09009 * 109.47086 * 300.00275 * 1 2 3 31 31 H 1.08998 * 109.47132 * 59.99664 * 1 2 3 32 32 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 33 33 H 0.97004 * 119.99368 * 95.00446 * 4 2 1 34 34 H 0.96994 * 120.00711 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.71471 * 88.02270 * 15 13 2 36 36 H 1.08996 * 110.72205 * 324.75371 * 15 13 2 37 37 H 1.08998 * 109.88438 * 262.77782 * 16 15 13 38 38 H 1.09000 * 110.00869 * 141.68739 * 16 15 13 39 39 H 1.09003 * 109.47263 * 60.00334 * 20 18 17 40 40 H 1.08997 * 109.47705 * 299.99638 * 20 18 17 41 41 H 1.08993 * 110.59808 * 298.50833 * 22 21 20 42 42 H 1.08997 * 110.59610 * 61.29868 * 22 21 20 43 43 H 1.08995 * 109.46865 * 270.17675 * 26 25 23 44 44 H 1.09001 * 109.47034 * 30.17505 * 26 25 23 45 45 H 1.09001 * 109.46722 * 150.17279 * 26 25 23 46 46 H 1.08997 * 110.36724 * 94.47569 * 29 17 16 47 47 H 1.08997 * 110.36503 * 216.80508 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3757 6 1 1.8919 1.0405 2.4243 7 6 2.6123 -0.6616 3.5090 8 7 2.7375 -0.0051 4.6429 9 14 3.0578 -2.4737 3.4249 10 1 4.4905 -2.6149 3.0610 11 1 2.8186 -3.1042 4.7481 12 1 2.2181 -3.1427 2.3989 13 6 2.0400 -0.7212 -1.2492 14 1 1.6547 -1.7398 -1.2943 15 6 3.5906 -0.7102 -1.3037 16 6 3.8841 -0.8160 -2.8150 17 7 2.6859 -0.3470 -3.5263 18 6 2.5343 -0.3018 -4.8647 19 8 1.4976 0.1061 -5.3441 20 6 3.6529 -0.7580 -5.7655 21 7 3.2438 -0.6115 -7.1646 22 6 2.5608 -1.6209 -7.9923 23 6 2.3909 -0.9288 -9.3301 24 8 1.8738 -1.3820 -10.3286 25 7 2.9287 0.2974 -9.1769 26 6 2.9751 1.3133 -10.2315 27 6 3.4180 0.4711 -7.9439 28 8 3.9553 1.4945 -7.5682 29 6 1.6802 0.0719 -2.5330 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0615 -0.4621 5.4347 35 1 4.0013 -1.5674 -0.7701 36 1 3.9841 0.2221 -0.8987 37 1 4.0909 -1.8526 -3.0808 38 1 4.7378 -0.1897 -3.0739 39 1 3.8799 -1.8045 -5.5615 40 1 4.5391 -0.1512 -5.5804 41 1 3.1787 -2.5125 -8.0974 42 1 1.5914 -1.8758 -7.5640 43 1 3.8966 1.2020 -10.8029 44 1 2.1190 1.1881 -10.8945 45 1 2.9442 2.3056 -9.7815 46 1 1.7502 1.1443 -2.3513 47 1 0.6787 -0.1917 -2.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279038386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:11 Heat of formation + Delta-G solvation = -71.558856 kcal Electronic energy + Delta-G solvation = -29535.217180 eV Core-core repulsion = 25332.923032 eV Total energy + Delta-G solvation = -4202.294148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38749 -41.14468 -39.79056 -39.09183 -37.31132 -36.88636 -36.20727 -34.29021 -32.48478 -31.22607 -31.07088 -29.06273 -28.16824 -27.52209 -25.96392 -24.35587 -23.45288 -22.72408 -21.62086 -21.29379 -20.30271 -19.56090 -18.73891 -18.50433 -17.85292 -17.82663 -17.35943 -16.89873 -16.49662 -16.47028 -15.87502 -15.71269 -15.29987 -15.22457 -15.06219 -14.92630 -14.73818 -14.63188 -14.21605 -13.97592 -13.82816 -13.66657 -13.58528 -13.51912 -13.44298 -13.07815 -12.90833 -12.81062 -12.34143 -12.11209 -12.01196 -11.87990 -11.68881 -11.64089 -11.43792 -11.38880 -11.30494 -10.94820 -10.93276 -10.06722 -9.66894 -9.27403 -7.96338 -5.29582 0.52130 0.92192 1.41910 1.46790 1.52696 1.54063 1.72267 1.88864 2.16071 2.54233 2.99630 3.30203 3.35145 3.57159 3.64422 3.69211 3.87335 4.09639 4.14569 4.21874 4.32939 4.33918 4.36553 4.39115 4.41670 4.46294 4.50750 4.57620 4.68425 4.69126 4.76816 4.81949 4.90545 4.97780 5.06085 5.12142 5.20010 5.24181 5.34349 5.39518 5.58908 5.83278 5.96344 6.25710 6.27030 6.49096 6.88901 7.06784 7.14390 7.89659 8.10540 9.25450 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.002086 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.007320 B =13422.735934 C =13519.214758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.041 0.959 4 N -0.744 5.744 5 C -0.222 4.222 6 H 0.051 0.949 7 C -0.070 4.070 8 N -0.989 5.989 9 Si 0.957 3.043 10 H -0.272 1.272 11 H -0.305 1.305 12 H -0.248 1.248 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.122 4.122 16 C 0.098 3.902 17 N -0.613 5.613 18 C 0.501 3.499 19 O -0.583 6.583 20 C 0.141 3.859 21 N -0.607 5.607 22 C 0.071 3.929 23 C 0.525 3.475 24 O -0.499 6.499 25 N -0.584 5.584 26 C 0.082 3.918 27 C 0.699 3.301 28 O -0.579 6.579 29 C 0.119 3.881 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.367 0.633 34 H 0.255 0.745 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.173 0.827 40 H 0.131 0.869 41 H 0.171 0.829 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -8.036 -29.849 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.076 3.924 3 H 0.059 0.941 4 N -0.387 5.387 5 C -0.353 4.353 6 H 0.069 0.931 7 C -0.261 4.261 8 N -0.640 5.640 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.233 1.233 12 H -0.172 1.172 13 C -0.115 4.115 14 H 0.112 0.888 15 C -0.160 4.160 16 C -0.023 4.023 17 N -0.347 5.347 18 C 0.290 3.710 19 O -0.463 6.463 20 C 0.017 3.983 21 N -0.344 5.344 22 C -0.053 4.053 23 C 0.315 3.685 24 O -0.371 6.371 25 N -0.329 5.329 26 C -0.058 4.058 27 C 0.401 3.599 28 O -0.456 6.456 29 C -0.004 4.004 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.201 0.799 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.190 0.810 40 H 0.149 0.851 41 H 0.189 0.811 42 H 0.151 0.849 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.363 -7.299 -30.356 31.525 hybrid contribution -0.188 -0.142 0.948 0.977 sum 4.175 -7.441 -29.408 30.620 Atomic orbital electron populations 1.22349 0.97991 1.01352 1.00417 1.20266 0.92387 0.94952 0.84784 0.94065 1.42643 1.79974 1.09487 1.06623 1.18956 1.34655 0.94154 0.87529 0.93114 1.25541 1.02629 1.02813 0.95097 1.69900 1.54923 1.37870 1.01263 0.85374 0.78909 0.80415 0.76826 1.19813 1.23264 1.17232 1.22530 0.96725 0.99894 0.92318 0.88834 1.22599 0.94611 1.03632 0.95142 1.22388 0.86840 1.02038 0.91064 1.48623 1.18084 1.63399 1.04582 1.21509 0.89758 0.78062 0.81680 1.90713 1.31569 1.48965 1.75063 1.21433 0.94638 1.07635 0.74602 1.47150 1.61206 1.14615 1.11381 1.22784 1.02909 0.93724 0.85930 1.21236 0.75437 0.81327 0.90510 1.90815 1.42051 1.69940 1.34296 1.46386 1.55129 1.17635 1.13733 1.21998 1.04875 0.90366 0.88595 1.16008 0.78975 0.83988 0.80945 1.90963 1.48791 1.29609 1.76218 1.22142 0.92695 0.98401 0.87176 0.95141 0.91650 0.92793 0.79927 0.93586 0.89213 0.91691 0.87347 0.89216 0.80991 0.85133 0.81149 0.84852 0.89267 0.88553 0.89782 0.92287 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 9.34 71.98 0.67 -4.52 16 2 C 0.18 6.19 2.41 44.99 0.11 6.30 16 3 H 0.04 1.53 8.04 -2.38 -0.02 1.51 16 4 N -0.74 -31.26 4.62 -322.94 -1.49 -32.75 16 5 C -0.22 -12.00 10.41 84.03 0.87 -11.13 16 6 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.99 -62.23 13.97 21.65 0.30 -61.93 16 9 Si 0.96 42.92 27.74 68.60 1.90 44.82 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.31 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.25 -9.77 6.52 99.48 0.65 -9.12 16 13 C -0.09 -2.28 2.64 -9.32 -0.02 -2.31 16 14 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.12 -2.51 6.13 31.78 0.19 -2.31 16 16 C 0.10 1.26 6.48 86.73 0.56 1.82 16 17 N -0.61 -11.49 3.32 -811.37 -2.70 -14.19 16 18 C 0.50 10.02 7.92 87.66 0.69 10.71 16 19 O -0.58 -17.25 16.68 -3.01 -0.05 -17.30 16 20 C 0.14 1.46 5.82 85.63 0.50 1.95 16 21 N -0.61 -8.51 2.51 -846.23 -2.12 -10.63 16 22 C 0.07 0.60 7.66 85.76 0.66 1.26 16 23 C 0.53 8.05 8.32 87.94 0.73 8.78 16 24 O -0.50 -10.17 17.76 -2.88 -0.05 -10.22 16 25 N -0.58 -10.10 3.00 -796.65 -2.39 -12.50 16 26 C 0.08 1.08 10.73 127.77 1.37 2.45 16 27 C 0.70 14.52 8.31 179.44 1.49 16.01 16 28 O -0.58 -16.44 17.15 -3.85 -0.07 -16.51 16 29 C 0.12 2.79 5.57 86.93 0.48 3.27 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.37 14.47 5.66 -92.71 -0.52 13.94 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.13 1.22 8.03 -2.39 -0.02 1.20 16 41 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 1.08 8.01 -2.39 -0.02 1.07 16 45 H 0.08 1.21 7.86 -2.39 -0.02 1.19 16 46 H 0.06 1.53 8.01 -2.39 -0.02 1.51 16 47 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 Total: -1.00 -85.50 391.56 2.51 -82.98 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.40 Total: 19.43 kcal Atomic # 6 Polarization: 20.01 SS G_CDS: 8.78 Total: 28.79 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -8.40 Total: -132.00 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.17 Total: -44.03 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.90 Total: 44.82 kcal Total: -85.50 2.51 -82.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279038386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.425 kcal (2) G-P(sol) polarization free energy of solvation -85.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds