Wall clock time and date at job start Tue Mar 31 2020 21:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.87576 * 2 1 4 4 C 1.54329 * 109.88360 * 238.98450 * 2 1 3 5 5 H 1.08998 * 110.71739 * 99.84955 * 4 2 1 6 6 N 1.46499 * 110.71762 * 336.75436 * 4 2 1 7 7 C 1.36939 * 119.99547 * 157.44060 * 6 4 2 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55157 * 103.10158 * 218.29951 * 4 2 1 16 16 C 1.55386 * 101.36485 * 35.49745 * 15 4 2 17 17 N 1.47028 * 109.88389 * 121.17652 * 2 1 3 18 18 C 1.34767 * 125.64942 * 298.32310 * 17 2 1 19 19 O 1.21289 * 120.00042 * 0.02562 * 18 17 2 20 20 C 1.50702 * 120.00391 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.47544 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47014 * 180.02562 * 21 20 18 23 23 N 1.46500 * 109.46788 * 179.97438 * 22 21 20 24 24 C 1.34770 * 124.17876 * 90.00399 * 23 22 21 25 25 O 1.21240 * 127.15642 * 359.97438 * 24 23 22 26 26 C 1.51581 * 105.68921 * 179.97438 * 24 23 22 27 27 N 1.47312 * 103.59116 * 359.97438 * 26 24 23 28 28 C 1.33786 * 124.18039 * 269.69717 * 23 22 21 29 29 O 1.21540 * 123.77068 * 0.04235 * 28 23 22 30 30 H 1.09009 * 109.47047 * 181.01467 * 1 2 3 31 31 H 1.09001 * 109.47122 * 301.01388 * 1 2 3 32 32 H 1.08999 * 109.47341 * 61.01533 * 1 2 3 33 33 H 0.96998 * 120.00185 * 337.43443 * 6 4 2 34 34 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 35 35 H 1.08999 * 111.00114 * 153.66495 * 15 4 2 36 36 H 1.08999 * 111.00438 * 277.51490 * 15 4 2 37 37 H 1.08998 * 110.33735 * 204.16137 * 16 15 4 38 38 H 1.08999 * 110.44317 * 81.91777 * 16 15 4 39 39 H 1.09000 * 109.46691 * 300.00539 * 20 18 17 40 40 H 1.09006 * 109.46616 * 59.99756 * 20 18 17 41 41 H 1.09004 * 109.46940 * 300.00371 * 21 20 18 42 42 H 1.09005 * 109.46818 * 59.99680 * 21 20 18 43 43 H 1.09004 * 109.47504 * 299.99945 * 22 21 20 44 44 H 1.09000 * 109.47208 * 60.00205 * 22 21 20 45 45 H 1.08996 * 110.60130 * 118.52121 * 26 24 23 46 46 H 1.08994 * 110.59951 * 241.31859 * 26 24 23 47 47 H 0.96994 * 126.69311 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 2.3500 -0.0432 -2.0213 6 7 1.0471 -1.6831 -1.7498 7 6 1.0905 -2.0962 -3.0546 8 1 1.8673 -1.7324 -3.7108 9 6 0.1360 -2.9828 -3.5340 10 7 -0.8104 -3.4267 -2.7342 11 14 0.1947 -3.5459 -5.3141 12 1 -0.6055 -2.6183 -6.1534 13 1 -0.3665 -4.9168 -5.4184 14 1 1.6028 -3.5504 -5.7857 15 6 3.2897 -1.5131 -0.6990 16 6 2.8145 -1.8805 0.7341 17 7 2.0300 -0.7158 1.1829 18 6 1.8085 -0.3648 2.4651 19 8 1.1451 0.6183 2.7189 20 6 2.3843 -1.1945 3.5837 21 6 1.9878 -0.5827 4.9289 22 6 2.5729 -1.4247 6.0644 23 7 2.1937 -0.8384 7.3523 24 6 1.0744 -1.1603 8.0305 25 8 0.2233 -1.9589 7.7021 26 6 1.1007 -0.3161 9.2892 27 7 2.3493 0.4554 9.1625 28 6 2.9187 0.0782 8.0034 29 8 3.9723 0.5231 7.5922 30 1 -0.3633 -1.0276 0.0182 31 1 -0.3633 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 0.3493 -2.0097 -1.1606 34 1 -0.8411 -3.1340 -1.8100 35 1 3.4870 -2.4074 -1.2900 36 1 4.1668 -0.8668 -0.6665 37 1 3.6716 -2.0358 1.3893 38 1 2.1891 -2.7729 0.7107 39 1 1.9970 -2.2113 3.5183 40 1 3.4709 -1.2135 3.4998 41 1 2.3754 0.4341 4.9939 42 1 0.9012 -0.5633 5.0130 43 1 2.1856 -2.4415 5.9995 44 1 3.6594 -1.4436 5.9800 45 1 0.2392 0.3508 9.3218 46 1 1.1275 -0.9499 10.1755 47 1 2.6952 1.1058 9.7935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283928291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:28 Heat of formation + Delta-G solvation = -58.615183 kcal Electronic energy + Delta-G solvation = -29507.542443 eV Core-core repulsion = 25305.809575 eV Total energy + Delta-G solvation = -4201.732869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70782 -40.04799 -38.95703 -37.73388 -36.49292 -35.96607 -34.26523 -33.13049 -31.60109 -30.85800 -28.93964 -28.28002 -27.24553 -25.20176 -23.67816 -23.38596 -23.19681 -21.92692 -20.73162 -19.79097 -18.64465 -18.36192 -17.61881 -17.47969 -17.18038 -16.70446 -16.28566 -15.88430 -15.65736 -15.53147 -14.85804 -14.61297 -14.58711 -14.39968 -14.04671 -13.92944 -13.66064 -13.36926 -12.99123 -12.79546 -12.73732 -12.33843 -12.26971 -11.95281 -11.75125 -11.33342 -11.29900 -11.20969 -11.04741 -11.01983 -10.69527 -10.65525 -10.29009 -10.22456 -10.20605 -10.00336 -9.97360 -9.54990 -9.22856 -8.97094 -8.37476 -7.10839 -6.15307 -3.16458 1.20926 1.76327 2.58047 2.67907 2.81656 3.19910 3.49276 3.53522 3.54047 3.67468 4.30488 4.44649 4.48238 4.61985 4.62571 4.69335 4.92398 4.96103 5.01062 5.08185 5.19522 5.25017 5.35814 5.36701 5.41722 5.52349 5.62824 5.66527 5.75564 5.82340 5.86445 6.01230 6.05816 6.25318 6.26652 6.32152 6.41276 6.53514 6.61112 6.65829 6.76529 6.87642 6.94443 7.68241 7.76706 7.79890 8.36809 8.69968 9.15507 10.01933 10.16610 11.32320 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.002078 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.334680 B =13470.311368 C =13868.355701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 H 0.071 0.929 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.725 5.725 7 C -0.334 4.334 8 H 0.066 0.934 9 C -0.043 4.043 10 N -0.941 5.941 11 Si 1.083 2.917 12 H -0.295 1.295 13 H -0.288 1.288 14 H -0.295 1.295 15 C -0.158 4.158 16 C 0.104 3.896 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.547 6.547 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.118 3.882 23 N -0.575 5.575 24 C 0.518 3.482 25 O -0.464 6.464 26 C 0.062 3.938 27 N -0.730 5.730 28 C 0.701 3.299 29 O -0.539 6.539 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.371 0.629 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 5.220 24.796 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.089 0.911 4 C 0.065 3.935 5 H 0.087 0.913 6 N -0.369 5.369 7 C -0.465 4.465 8 H 0.084 0.916 9 C -0.241 4.241 10 N -0.586 5.586 11 Si 0.914 3.086 12 H -0.223 1.223 13 H -0.214 1.214 14 H -0.221 1.221 15 C -0.200 4.200 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.315 3.685 19 O -0.425 6.425 20 C -0.173 4.173 21 C -0.157 4.157 22 C -0.003 4.003 23 N -0.321 5.321 24 C 0.305 3.695 25 O -0.333 6.333 26 C -0.065 4.065 27 N -0.396 5.396 28 C 0.401 3.599 29 O -0.413 6.413 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.207 0.793 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 7.539 4.596 23.184 24.809 hybrid contribution 0.752 1.058 1.591 2.053 sum 8.291 5.654 24.775 26.730 Atomic orbital electron populations 1.21911 0.94504 1.02370 1.01848 1.21978 0.95242 0.95750 0.84838 0.91102 1.21127 0.88947 0.91449 0.92003 0.91340 1.42568 1.31242 1.52655 1.10450 1.20064 1.13274 1.25581 0.87571 0.91577 1.25773 0.94487 0.97374 1.06430 1.70858 1.34386 1.46740 1.06646 0.83194 0.74909 0.76496 0.74045 1.22316 1.21433 1.22129 1.23569 0.99192 1.02402 0.94804 1.22384 0.94430 0.88663 0.96363 1.48671 1.52070 1.28558 1.04991 1.20122 0.80558 0.85338 0.82443 1.90676 1.40433 1.28107 1.83323 1.21515 1.02591 1.00474 0.92736 1.21648 1.02389 1.00082 0.91623 1.21777 1.02126 0.97524 0.78828 1.46378 1.23248 1.40014 1.22500 1.20927 0.80743 0.82209 0.85581 1.90864 1.37663 1.32735 1.72020 1.22472 0.89753 0.95944 0.98380 1.45426 1.24371 1.46299 1.23477 1.15889 0.83447 0.79464 0.81078 1.91040 1.21391 1.58703 1.70117 0.92242 0.92500 0.91497 0.79272 0.93390 0.89372 0.91933 0.91543 0.91215 0.88569 0.88658 0.90342 0.90501 0.88423 0.88309 0.85791 0.85857 0.71437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.47 37.15 0.31 -2.52 16 2 C 0.13 2.23 3.43 -66.95 -0.23 2.00 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.18 3.37 3.46 -66.09 -0.23 3.14 16 5 H 0.07 1.33 8.11 -51.93 -0.42 0.90 16 6 N -0.73 -17.11 4.60 -51.65 -0.24 -17.35 16 7 C -0.33 -8.93 9.97 -15.06 -0.15 -9.08 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 10 N -0.94 -28.47 13.70 55.49 0.76 -27.71 16 11 Si 1.08 25.36 29.92 -169.99 -5.09 20.27 16 12 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.16 -2.54 6.81 -24.32 -0.17 -2.71 16 16 C 0.10 1.51 6.68 -2.27 -0.02 1.49 16 17 N -0.61 -9.73 3.07 -162.71 -0.50 -10.23 16 18 C 0.53 8.28 7.64 -10.99 -0.08 8.20 16 19 O -0.55 -10.41 15.03 5.55 0.08 -10.32 16 20 C -0.13 -1.47 4.71 -27.88 -0.13 -1.60 16 21 C -0.12 -1.31 4.83 -26.73 -0.13 -1.44 16 22 C 0.12 1.04 5.70 -4.05 -0.02 1.01 16 23 N -0.58 -5.08 2.60 -120.73 -0.31 -5.40 16 24 C 0.52 4.17 8.32 -10.55 -0.09 4.08 16 25 O -0.46 -5.26 17.76 5.59 0.10 -5.16 16 26 C 0.06 0.21 7.97 -4.32 -0.03 0.18 16 27 N -0.73 -3.49 6.58 -65.74 -0.43 -3.92 16 28 C 0.70 6.42 8.62 -88.02 -0.76 5.66 16 29 O -0.54 -6.95 17.48 5.33 0.09 -6.86 16 30 H 0.06 1.23 6.21 -51.92 -0.32 0.91 16 31 H 0.06 1.09 6.91 -51.93 -0.36 0.73 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.37 9.20 4.41 -40.82 -0.18 9.02 16 34 H 0.25 7.63 6.77 -40.82 -0.28 7.35 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.86 7.85 -51.93 -0.41 0.45 16 41 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.10 0.76 8.01 -51.93 -0.42 0.35 16 44 H 0.10 0.79 7.85 -51.93 -0.41 0.39 16 45 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.44 1.04 8.96 -40.82 -0.37 0.68 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -36.65 385.88 -8.51 -45.16 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.97 Total: 8.58 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.82 Total: 7.11 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.72 Total: -64.61 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.28 Total: -22.34 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.65 -8.51 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283928291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds