Wall clock time and date at job start Tue Mar 31 2020 21:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.99586 * 2 1 4 4 C 1.54329 * 109.99319 * 238.96337 * 2 1 3 5 5 H 1.09009 * 110.66844 * 337.04199 * 4 2 1 6 6 N 1.46503 * 110.85206 * 100.19629 * 4 2 1 7 7 C 1.36935 * 119.99678 * 200.14880 * 6 4 2 8 8 H 1.08005 * 120.00215 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99771 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00125 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46981 * 90.00140 * 11 9 7 13 13 H 1.48502 * 109.47297 * 209.99686 * 11 9 7 14 14 H 1.48493 * 109.47133 * 330.00288 * 11 9 7 15 15 C 1.55159 * 103.02245 * 218.66600 * 4 2 1 16 16 C 1.54910 * 101.58155 * 35.30330 * 15 4 2 17 17 N 1.47019 * 109.88341 * 121.09391 * 2 1 3 18 18 C 1.34784 * 125.64840 * 298.39513 * 17 2 1 19 19 O 1.21283 * 119.99667 * 359.71499 * 18 17 2 20 20 C 1.50693 * 119.99987 * 179.71833 * 18 17 2 21 21 C 1.53001 * 109.47176 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47362 * 179.97438 * 21 20 18 23 23 N 1.46497 * 109.47305 * 179.97438 * 22 21 20 24 24 C 1.34765 * 124.17678 * 89.99902 * 23 22 21 25 25 O 1.21227 * 127.16016 * 0.02562 * 24 23 22 26 26 C 1.51592 * 105.68374 * 179.97438 * 24 23 22 27 27 N 1.47310 * 103.59043 * 359.97438 * 26 24 23 28 28 C 1.33794 * 124.17925 * 269.70095 * 23 22 21 29 29 O 1.21543 * 123.76855 * 0.03773 * 28 23 22 30 30 H 1.09002 * 109.46871 * 300.36166 * 1 2 3 31 31 H 1.08998 * 109.47010 * 60.35868 * 1 2 3 32 32 H 1.08994 * 109.46849 * 180.35839 * 1 2 3 33 33 H 0.96998 * 120.00116 * 20.14829 * 6 4 2 34 34 H 0.97000 * 119.99994 * 179.97438 * 10 9 7 35 35 H 1.08997 * 111.00081 * 277.23050 * 15 4 2 36 36 H 1.08998 * 111.03932 * 153.39244 * 15 4 2 37 37 H 1.09002 * 110.36832 * 204.15743 * 16 15 4 38 38 H 1.08998 * 110.46009 * 81.87490 * 16 15 4 39 39 H 1.09002 * 109.47106 * 299.99491 * 20 18 17 40 40 H 1.09003 * 109.47551 * 59.99749 * 20 18 17 41 41 H 1.09004 * 109.46992 * 299.99543 * 21 20 18 42 42 H 1.09003 * 109.47284 * 59.99343 * 21 20 18 43 43 H 1.08996 * 109.47024 * 300.00117 * 22 21 20 44 44 H 1.08997 * 109.46885 * 59.99795 * 22 21 20 45 45 H 1.09003 * 110.59790 * 118.52562 * 26 24 23 46 46 H 1.09005 * 110.59711 * 241.31931 * 26 24 23 47 47 H 0.97005 * 126.68392 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 1.3067 -1.4406 -1.6225 6 7 2.4637 0.1969 -2.2863 7 6 2.5655 -0.2213 -3.5862 8 1 2.3468 -1.2476 -3.8421 9 6 2.9507 0.6735 -4.5750 10 7 3.2177 1.9241 -4.2631 11 14 3.0902 0.1030 -6.3483 12 1 1.7860 0.2917 -7.0331 13 1 4.1339 0.8982 -7.0436 14 1 3.4613 -1.3345 -6.3780 15 6 3.2864 -1.5183 -0.6914 16 6 2.8100 -1.8825 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4658 19 8 1.1475 0.6239 2.7179 20 6 2.3785 -1.1932 3.5855 21 6 1.9805 -0.5804 4.9297 22 6 2.5597 -1.4246 6.0667 23 7 2.1791 -0.8375 7.3538 24 6 1.0569 -1.1557 8.0288 25 8 0.2045 -1.9519 7.6983 26 6 1.0829 -0.3120 9.2879 27 7 2.3345 0.4552 9.1647 28 6 2.9055 0.0766 8.0071 29 8 3.9617 0.5180 7.5986 30 1 -0.3633 0.5195 0.8868 31 1 -0.3633 0.5082 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 2.6605 1.1184 -2.0564 34 1 3.4873 2.5493 -4.9540 35 1 4.1670 -0.8768 -0.6579 36 1 3.4814 -2.4155 -1.2788 37 1 3.6656 -2.0411 1.3933 38 1 2.1807 -2.7721 0.7134 39 1 1.9879 -2.2087 3.5198 40 1 3.4652 -1.2158 3.5036 41 1 2.3707 0.4353 4.9958 42 1 0.8937 -0.5581 5.0114 43 1 2.1692 -2.4401 6.0004 44 1 3.6464 -1.4472 5.9851 45 1 0.2235 0.3578 9.3185 46 1 1.1052 -0.9463 10.1741 47 1 2.6809 1.1042 9.7969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283928292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:31 Heat of formation + Delta-G solvation = -92.959228 kcal Electronic energy + Delta-G solvation = -29131.147170 eV Core-core repulsion = 24927.925031 eV Total energy + Delta-G solvation = -4203.222138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.29432 -41.26253 -39.64471 -38.94117 -37.17899 -36.67496 -35.90996 -34.02149 -33.22048 -32.22951 -30.86924 -28.92938 -28.04725 -26.85425 -24.98131 -24.37704 -23.84528 -22.99256 -21.54280 -21.33706 -20.01193 -19.14273 -19.00766 -18.17111 -17.98841 -17.63658 -17.41454 -16.67355 -16.62833 -16.33291 -16.25297 -15.66743 -15.41434 -15.28447 -15.16528 -14.97477 -14.73503 -14.57163 -14.38216 -14.05088 -13.70147 -13.45433 -13.35885 -13.13103 -12.98446 -12.90395 -12.84036 -12.62854 -12.51303 -12.17879 -12.07961 -12.03693 -11.87855 -11.71221 -11.53295 -11.31282 -10.99252 -10.91843 -10.76819 -10.40368 -9.65045 -9.03092 -7.94308 -5.24520 0.62936 1.20306 1.48809 1.50536 1.58804 1.64726 1.90587 2.01198 2.30505 2.57286 3.07337 3.36027 3.46416 3.74483 3.76389 3.78926 3.86524 3.99761 4.11625 4.18425 4.25991 4.32915 4.36694 4.41491 4.43068 4.45825 4.52742 4.60279 4.62162 4.66739 4.71376 4.79949 4.93916 5.01840 5.04843 5.17586 5.21230 5.24940 5.36207 5.48049 5.54953 5.84733 6.04400 6.25883 6.39535 6.60957 7.11018 7.17436 7.31956 8.04387 8.28087 9.29307 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.001892 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.250218 B =14793.092152 C =14967.478043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 H 0.039 0.961 4 C 0.169 3.831 5 H 0.070 0.930 6 N -0.731 5.731 7 C -0.235 4.235 8 H 0.085 0.915 9 C -0.079 4.079 10 N -0.973 5.973 11 Si 0.975 3.025 12 H -0.290 1.290 13 H -0.300 1.300 14 H -0.264 1.264 15 C -0.149 4.149 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.518 3.482 19 O -0.591 6.591 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.120 3.880 23 N -0.581 5.581 24 C 0.514 3.486 25 O -0.501 6.501 26 C 0.072 3.928 27 N -0.712 5.712 28 C 0.693 3.307 29 O -0.586 6.586 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.152 0.848 46 H 0.162 0.838 47 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 -12.103 31.086 33.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.370 5.370 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.217 1.217 13 H -0.227 1.227 14 H -0.188 1.188 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.309 3.691 19 O -0.472 6.472 20 C -0.161 4.161 21 C -0.149 4.149 22 C -0.001 4.001 23 N -0.327 5.327 24 C 0.303 3.697 25 O -0.372 6.372 26 C -0.054 4.054 27 N -0.377 5.377 28 C 0.393 3.607 29 O -0.463 6.463 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.169 0.831 46 H 0.179 0.821 47 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -3.037 -11.950 30.677 33.062 hybrid contribution 0.344 1.247 -1.202 1.766 sum -2.692 -10.702 29.475 31.473 Atomic orbital electron populations 1.21915 0.94377 1.02398 1.01396 1.21579 0.94738 0.95341 0.85683 0.94264 1.21451 0.95088 0.91052 0.86432 0.91242 1.42541 1.81161 1.09502 1.03803 1.19625 1.36675 0.95500 0.84812 0.89762 1.25618 1.03262 0.95907 1.02330 1.69844 1.54683 1.04423 1.33380 0.85115 0.76738 0.77769 0.79971 1.21686 1.22689 1.18824 1.23378 0.98782 1.01177 0.95603 1.22576 0.96099 0.87770 0.95244 1.48686 1.52380 1.28960 1.04422 1.21101 0.79759 0.85224 0.83057 1.90671 1.42643 1.29956 1.83934 1.21558 1.03979 1.00629 0.89884 1.21514 1.01016 0.99241 0.93135 1.21762 1.02543 0.97614 0.78210 1.46490 1.23448 1.40097 1.22637 1.21604 0.79666 0.81836 0.86557 1.90829 1.38651 1.34667 1.73099 1.22726 0.89475 0.96026 0.97159 1.45419 1.24074 1.46038 1.22144 1.16114 0.83141 0.79426 0.81995 1.91017 1.23332 1.60369 1.71533 0.93156 0.92594 0.91074 0.79870 0.94161 0.92789 0.89180 0.87670 0.88501 0.85135 0.86087 0.93284 0.92431 0.86607 0.87644 0.83098 0.82110 0.69960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.11 71.98 0.66 -4.26 16 2 C 0.13 4.77 3.21 45.34 0.15 4.91 16 3 H 0.04 1.71 7.69 -2.38 -0.02 1.69 16 4 C 0.17 6.39 3.12 46.18 0.14 6.54 16 5 H 0.07 2.56 7.83 -2.38 -0.02 2.54 16 6 N -0.73 -36.34 5.25 -317.30 -1.67 -38.01 16 7 C -0.23 -12.60 9.98 84.03 0.84 -11.77 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 10 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 11 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 C -0.15 -4.49 6.77 31.99 0.22 -4.28 16 16 C 0.10 2.25 6.69 86.86 0.58 2.83 16 17 N -0.61 -17.73 3.06 -788.03 -2.41 -20.14 16 18 C 0.52 15.14 7.64 87.65 0.67 15.80 16 19 O -0.59 -22.82 15.03 -3.04 -0.05 -22.86 16 20 C -0.12 -2.13 4.71 29.85 0.14 -1.99 16 21 C -0.11 -2.22 4.83 30.59 0.15 -2.07 16 22 C 0.12 1.76 5.70 86.38 0.49 2.25 16 23 N -0.58 -9.00 2.60 -773.14 -2.01 -11.01 16 24 C 0.51 6.65 8.32 87.94 0.73 7.38 16 25 O -0.50 -9.71 17.76 -2.86 -0.05 -9.76 16 26 C 0.07 0.19 7.97 85.76 0.68 0.87 16 27 N -0.71 -4.91 6.58 -480.29 -3.16 -8.08 16 28 C 0.69 11.75 8.62 179.44 1.55 13.30 16 29 O -0.59 -15.17 17.48 -3.85 -0.07 -15.24 16 30 H 0.05 1.83 6.89 -2.39 -0.02 1.82 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.37 20.49 7.51 -92.71 -0.70 19.79 16 34 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.11 1.59 7.48 -2.39 -0.02 1.57 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 1.62 7.85 -2.39 -0.02 1.60 16 41 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 42 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 43 H 0.12 1.26 8.00 -2.39 -0.02 1.24 16 44 H 0.11 1.43 7.85 -2.39 -0.02 1.41 16 45 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.16 -0.62 8.14 -2.38 -0.02 -0.64 16 47 H 0.45 1.00 8.96 -92.70 -0.83 0.17 16 Total: -1.00 -85.16 391.40 -0.17 -85.33 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.52 Total: 26.40 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 7.46 Total: 25.48 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -8.97 Total: -136.97 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.16 Total: -47.86 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -85.16 -0.17 -85.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283928292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.633 kcal (2) G-P(sol) polarization free energy of solvation -85.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds