Wall clock time and date at job start Tue Mar 31 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.08995 * 110.72434 * 23.22722 * 4 2 1 6 6 N 1.46503 * 110.71976 * 260.12148 * 4 2 1 7 7 C 1.36937 * 119.99998 * 154.99834 * 6 4 2 8 8 H 1.08003 * 119.99660 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00249 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00342 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99751 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47271 * 89.99745 * 11 9 7 13 13 H 1.48502 * 109.47074 * 209.99879 * 11 9 7 14 14 H 1.48505 * 109.47369 * 329.99937 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21287 * 119.99819 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00034 * 180.02562 * 18 17 2 21 21 C 1.53002 * 109.46986 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47137 * 179.97438 * 21 20 18 23 23 N 1.46498 * 109.47360 * 179.97438 * 22 21 20 24 24 C 1.34770 * 124.17933 * 269.73257 * 23 22 21 25 25 O 1.21231 * 127.15405 * 359.97438 * 24 23 22 26 26 C 1.51579 * 105.68781 * 179.97438 * 24 23 22 27 27 N 1.47314 * 103.59132 * 0.31974 * 26 24 23 28 28 C 1.33786 * 124.18096 * 90.02450 * 23 22 21 29 29 O 1.21545 * 123.76793 * 359.96554 * 28 23 22 30 30 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 31 31 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 32 32 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 33 33 H 0.97005 * 120.00146 * 335.01097 * 6 4 2 34 34 H 0.96998 * 120.00145 * 180.02562 * 10 9 7 35 35 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 36 36 H 1.09002 * 111.00099 * 206.42557 * 15 4 2 37 37 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 38 38 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 39 39 H 1.09000 * 109.47168 * 300.00165 * 20 18 17 40 40 H 1.08993 * 109.47196 * 60.00454 * 20 18 17 41 41 H 1.08997 * 109.47276 * 300.00397 * 21 20 18 42 42 H 1.09003 * 109.47087 * 60.00579 * 21 20 18 43 43 H 1.08997 * 109.47559 * 300.00465 * 22 21 20 44 44 H 1.09003 * 109.46947 * 60.00225 * 22 21 20 45 45 H 1.08999 * 110.76768 * 241.71363 * 26 24 23 46 46 H 1.09001 * 110.56430 * 118.82597 * 26 24 23 47 47 H 0.97002 * 126.69571 * 179.84626 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 1.3050 -1.4434 1.6204 6 7 2.4522 0.1991 2.2886 7 6 2.4540 -0.1908 3.6013 8 1 2.1630 -1.1965 3.8662 9 6 2.8300 0.7066 4.5914 10 7 2.8323 0.3317 5.8530 11 14 3.3327 2.4463 4.1330 12 1 2.1356 3.3251 4.1381 13 1 4.3219 2.9516 5.1187 14 1 3.9403 2.4454 2.7780 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1461 0.6193 -2.7188 20 6 2.3907 -1.1898 -3.5837 21 6 1.9933 -0.5784 -4.9288 22 6 2.5818 -1.4180 -6.0644 23 7 2.2008 -0.8329 -7.3524 24 6 1.0855 -1.1624 -8.0334 25 8 0.2405 -1.9686 -7.7083 26 6 1.1074 -0.3154 -9.2902 27 7 2.3531 0.4607 -9.1630 28 6 2.9200 0.0904 -8.0005 29 8 3.9692 0.5429 -7.5863 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 2.7138 1.1024 2.0506 34 1 3.0946 0.9589 6.5448 35 1 4.1665 -0.8628 0.6642 36 1 3.4888 -2.4062 1.2832 37 1 3.6778 -2.0299 -1.3885 38 1 2.1972 -2.7715 -0.7109 39 1 3.4773 -1.2057 -3.4990 40 1 2.0064 -2.2077 -3.5193 41 1 0.9068 -0.5622 -5.0137 42 1 2.3781 0.4395 -4.9930 43 1 3.6683 -1.4338 -5.9793 44 1 2.1975 -2.4360 -6.0004 45 1 0.2437 0.3486 -9.3239 46 1 1.1385 -0.9476 -10.1775 47 1 2.6968 1.1126 -9.7936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283928293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:36 Heat of formation + Delta-G solvation = -60.801671 kcal Electronic energy + Delta-G solvation = -29212.438600 eV Core-core repulsion = 25010.610918 eV Total energy + Delta-G solvation = -4201.827682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75946 -40.10618 -39.01251 -37.73032 -36.53967 -36.02613 -34.27740 -33.19741 -31.69224 -30.99221 -29.75524 -28.41967 -27.40531 -25.37329 -23.72327 -23.29590 -22.67953 -21.94661 -20.78311 -20.24434 -18.89013 -18.45809 -17.63060 -17.54871 -17.25469 -16.79809 -16.39203 -15.95007 -15.71038 -15.52487 -14.79258 -14.65387 -14.48513 -14.42267 -14.22986 -13.99881 -13.70420 -13.42499 -12.89687 -12.84995 -12.76273 -12.48623 -12.20942 -12.03377 -12.00423 -11.79905 -11.37594 -11.31661 -11.20141 -11.12516 -10.90447 -10.71430 -10.65046 -10.37943 -10.26305 -10.07507 -10.01781 -9.69040 -9.60189 -8.98825 -8.48677 -7.35871 -5.83321 -3.20557 1.15134 1.71158 2.53351 2.63157 2.72428 3.07173 3.35491 3.39170 3.43737 3.48889 4.24761 4.35927 4.42886 4.54234 4.56012 4.61543 4.84809 4.88354 4.93091 5.00977 5.08507 5.17461 5.18927 5.29175 5.32763 5.41322 5.51744 5.58677 5.67308 5.75028 5.80405 5.88674 5.95889 6.00926 6.19182 6.22879 6.34158 6.50212 6.52053 6.55981 6.61654 6.78771 6.88271 7.64017 7.68639 7.90696 8.27445 8.35125 9.11791 9.84512 10.02830 11.34326 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.002034 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.691088 B =13759.975049 C =14073.667955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.072 0.928 4 C 0.181 3.819 5 H 0.077 0.923 6 N -0.739 5.739 7 C -0.248 4.248 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.544 6.544 20 C -0.132 4.132 21 C -0.120 4.120 22 C 0.118 3.882 23 N -0.575 5.575 24 C 0.520 3.480 25 O -0.466 6.466 26 C 0.062 3.938 27 N -0.730 5.730 28 C 0.700 3.300 29 O -0.538 6.538 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.124 0.876 47 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -5.650 -32.778 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.090 0.910 4 C 0.070 3.930 5 H 0.095 0.905 6 N -0.380 5.380 7 C -0.378 4.378 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.203 1.203 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.422 6.422 20 C -0.173 4.173 21 C -0.158 4.158 22 C -0.002 4.002 23 N -0.321 5.321 24 C 0.307 3.693 25 O -0.335 6.335 26 C -0.066 4.066 27 N -0.396 5.396 28 C 0.401 3.599 29 O -0.411 6.411 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.948 -5.481 -32.228 32.749 hybrid contribution 0.613 1.512 -0.440 1.690 sum -1.335 -3.969 -32.668 32.935 Atomic orbital electron populations 1.22045 0.94672 1.01861 1.02698 1.21950 0.94675 0.96691 0.84815 0.90950 1.21228 0.93909 0.91322 0.86564 0.90548 1.42711 1.80887 1.11075 1.03341 1.19029 1.39000 0.98999 0.80725 0.88985 1.24663 1.01249 0.97786 0.95081 1.69691 1.53934 1.35179 0.98887 0.86591 0.78478 0.86213 0.77473 1.20934 1.21640 1.20297 1.23534 1.00968 1.01998 0.93188 1.22404 0.94663 0.88397 0.97095 1.48591 1.52053 1.28796 1.05003 1.20155 0.80596 0.85329 0.82395 1.90689 1.40319 1.27953 1.83263 1.21509 1.02726 1.00326 0.92698 1.21659 1.02311 1.00254 0.91621 1.21771 1.02158 0.97463 0.78847 1.46374 1.23677 1.39583 1.22507 1.20913 0.80637 0.82250 0.85536 1.90849 1.37978 1.32507 1.72173 1.22477 0.89862 0.95834 0.98398 1.45435 1.24706 1.46226 1.23215 1.15897 0.83425 0.79527 0.81101 1.91052 1.21599 1.58431 1.69993 0.91142 0.91991 0.92846 0.80377 0.92938 0.90776 0.90051 0.91132 0.91413 0.88531 0.88583 0.90518 0.90271 0.88277 0.88456 0.85776 0.85861 0.71393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.11 37.16 0.34 -2.16 16 2 C 0.12 2.07 3.20 -66.95 -0.21 1.85 16 3 H 0.07 1.36 7.72 -51.93 -0.40 0.96 16 4 C 0.18 3.29 3.14 -66.09 -0.21 3.08 16 5 H 0.08 1.41 7.80 -51.93 -0.40 1.01 16 6 N -0.74 -16.81 5.03 -51.65 -0.26 -17.07 16 7 C -0.25 -6.72 10.44 -15.06 -0.16 -6.87 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.58 13.97 55.49 0.78 -27.81 16 11 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 15 C -0.16 -2.37 6.77 -24.58 -0.17 -2.54 16 16 C 0.10 1.15 6.69 -2.53 -0.02 1.13 16 17 N -0.61 -8.77 3.07 -163.02 -0.50 -9.27 16 18 C 0.53 7.53 7.64 -10.99 -0.08 7.45 16 19 O -0.54 -9.77 15.03 5.55 0.08 -9.69 16 20 C -0.13 -1.25 4.71 -27.88 -0.13 -1.38 16 21 C -0.12 -1.18 4.83 -26.73 -0.13 -1.31 16 22 C 0.12 0.91 5.70 -4.04 -0.02 0.89 16 23 N -0.58 -4.60 2.60 -120.73 -0.31 -4.91 16 24 C 0.52 3.68 8.31 -10.56 -0.09 3.59 16 25 O -0.47 -4.71 17.75 5.60 0.10 -4.61 16 26 C 0.06 0.17 7.97 -4.32 -0.03 0.13 16 27 N -0.73 -3.12 6.58 -65.74 -0.43 -3.55 16 28 C 0.70 6.03 8.62 -88.03 -0.76 5.27 16 29 O -0.54 -6.74 17.48 5.33 0.09 -6.65 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.36 8.33 5.42 -40.82 -0.22 8.11 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.76 7.85 -51.93 -0.41 0.35 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.10 0.71 7.86 -51.93 -0.41 0.30 16 44 H 0.10 0.62 8.00 -51.93 -0.42 0.20 16 45 H 0.12 0.11 8.14 -51.93 -0.42 -0.32 16 46 H 0.12 0.02 8.14 -51.93 -0.42 -0.41 16 47 H 0.44 0.87 8.96 -40.82 -0.37 0.51 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -37.22 388.31 -8.27 -45.49 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.18 Total: 5.75 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.77 Total: 9.28 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.73 Total: -62.61 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.28 Total: -20.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.22 -8.27 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283928293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.313 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds