Wall clock time and date at job start Tue Mar 31 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.08995 * 110.72434 * 23.22722 * 4 2 1 6 6 N 1.46503 * 110.71976 * 260.12148 * 4 2 1 7 7 C 1.36937 * 119.99998 * 154.99834 * 6 4 2 8 8 H 1.08003 * 119.99660 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00249 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00342 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99751 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47271 * 89.99745 * 11 9 7 13 13 H 1.48502 * 109.47074 * 209.99879 * 11 9 7 14 14 H 1.48505 * 109.47369 * 329.99937 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21287 * 119.99819 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00034 * 180.02562 * 18 17 2 21 21 C 1.53002 * 109.46986 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47137 * 179.97438 * 21 20 18 23 23 N 1.46498 * 109.47360 * 179.97438 * 22 21 20 24 24 C 1.34770 * 124.17933 * 269.73257 * 23 22 21 25 25 O 1.21231 * 127.15405 * 359.97438 * 24 23 22 26 26 C 1.51579 * 105.68781 * 179.97438 * 24 23 22 27 27 N 1.47314 * 103.59132 * 0.31974 * 26 24 23 28 28 C 1.33786 * 124.18096 * 90.02450 * 23 22 21 29 29 O 1.21545 * 123.76793 * 359.96554 * 28 23 22 30 30 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 31 31 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 32 32 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 33 33 H 0.97005 * 120.00146 * 335.01097 * 6 4 2 34 34 H 0.96998 * 120.00145 * 180.02562 * 10 9 7 35 35 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 36 36 H 1.09002 * 111.00099 * 206.42557 * 15 4 2 37 37 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 38 38 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 39 39 H 1.09000 * 109.47168 * 300.00165 * 20 18 17 40 40 H 1.08993 * 109.47196 * 60.00454 * 20 18 17 41 41 H 1.08997 * 109.47276 * 300.00397 * 21 20 18 42 42 H 1.09003 * 109.47087 * 60.00579 * 21 20 18 43 43 H 1.08997 * 109.47559 * 300.00465 * 22 21 20 44 44 H 1.09003 * 109.46947 * 60.00225 * 22 21 20 45 45 H 1.08999 * 110.76768 * 241.71363 * 26 24 23 46 46 H 1.09001 * 110.56430 * 118.82597 * 26 24 23 47 47 H 0.97002 * 126.69571 * 179.84626 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 1.3050 -1.4434 1.6204 6 7 2.4522 0.1991 2.2886 7 6 2.4540 -0.1908 3.6013 8 1 2.1630 -1.1965 3.8662 9 6 2.8300 0.7066 4.5914 10 7 2.8323 0.3317 5.8530 11 14 3.3327 2.4463 4.1330 12 1 2.1356 3.3251 4.1381 13 1 4.3219 2.9516 5.1187 14 1 3.9403 2.4454 2.7780 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1461 0.6193 -2.7188 20 6 2.3907 -1.1898 -3.5837 21 6 1.9933 -0.5784 -4.9288 22 6 2.5818 -1.4180 -6.0644 23 7 2.2008 -0.8329 -7.3524 24 6 1.0855 -1.1624 -8.0334 25 8 0.2405 -1.9686 -7.7083 26 6 1.1074 -0.3154 -9.2902 27 7 2.3531 0.4607 -9.1630 28 6 2.9200 0.0904 -8.0005 29 8 3.9692 0.5429 -7.5863 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 2.7138 1.1024 2.0506 34 1 3.0946 0.9589 6.5448 35 1 4.1665 -0.8628 0.6642 36 1 3.4888 -2.4062 1.2832 37 1 3.6778 -2.0299 -1.3885 38 1 2.1972 -2.7715 -0.7109 39 1 3.4773 -1.2057 -3.4990 40 1 2.0064 -2.2077 -3.5193 41 1 0.9068 -0.5622 -5.0137 42 1 2.3781 0.4395 -4.9930 43 1 3.6683 -1.4338 -5.9793 44 1 2.1975 -2.4360 -6.0004 45 1 0.2437 0.3486 -9.3239 46 1 1.1385 -0.9476 -10.1775 47 1 2.6968 1.1126 -9.7936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283928293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:36 Heat of formation + Delta-G solvation = -89.834310 kcal Electronic energy + Delta-G solvation = -29213.697550 eV Core-core repulsion = 25010.610918 eV Total energy + Delta-G solvation = -4203.086632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30112 -41.29230 -39.65096 -39.00361 -37.18462 -36.68394 -36.02573 -34.04120 -33.44430 -32.25996 -31.26362 -28.95120 -28.06988 -26.90564 -24.80145 -24.25841 -23.85220 -22.98689 -21.72679 -21.34871 -20.11009 -19.46670 -19.03956 -18.20137 -18.00306 -17.65651 -17.47459 -16.69630 -16.62672 -16.26281 -16.21757 -15.96002 -15.50110 -15.28819 -15.00617 -14.96422 -14.75230 -14.63264 -14.44891 -14.08931 -13.76609 -13.60273 -13.44401 -13.31206 -13.11362 -12.93756 -12.86426 -12.67557 -12.53863 -12.16090 -12.06668 -12.04047 -11.88383 -11.83201 -11.54829 -11.32032 -11.02117 -10.96048 -10.78237 -10.41020 -9.67192 -9.33425 -8.03577 -5.37302 0.62177 1.19810 1.36669 1.38244 1.44596 1.63723 1.89243 1.99614 2.29683 2.45917 3.06802 3.25902 3.43261 3.52927 3.71883 3.74645 3.86088 3.93014 4.10192 4.12747 4.24575 4.32139 4.34750 4.37039 4.41702 4.45144 4.46713 4.59304 4.62300 4.66003 4.70833 4.79461 4.90966 5.00323 5.02983 5.17156 5.20717 5.23770 5.33634 5.43293 5.76240 5.84072 6.03604 6.20174 6.38822 6.58532 7.04027 7.10355 7.16188 7.79587 7.97151 9.17199 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024118 B = 0.002034 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.691088 B =13759.975049 C =14073.667955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.128 3.872 3 H 0.049 0.951 4 C 0.172 3.828 5 H 0.073 0.927 6 N -0.745 5.745 7 C -0.224 4.224 8 H 0.068 0.932 9 C -0.058 4.058 10 N -0.979 5.979 11 Si 0.945 3.055 12 H -0.283 1.283 13 H -0.295 1.295 14 H -0.258 1.258 15 C -0.150 4.150 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.519 3.481 19 O -0.589 6.589 20 C -0.122 4.122 21 C -0.110 4.110 22 C 0.119 3.881 23 N -0.581 5.581 24 C 0.514 3.486 25 O -0.501 6.501 26 C 0.072 3.928 27 N -0.712 5.712 28 C 0.693 3.307 29 O -0.586 6.586 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.362 0.638 34 H 0.257 0.743 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.152 0.848 46 H 0.161 0.839 47 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -6.743 -36.318 36.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 H 0.067 0.933 4 C 0.063 3.937 5 H 0.091 0.909 6 N -0.387 5.387 7 C -0.354 4.354 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.629 5.629 11 Si 0.774 3.226 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.183 1.183 15 C -0.191 4.191 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.310 3.690 19 O -0.470 6.470 20 C -0.161 4.161 21 C -0.149 4.149 22 C -0.002 4.002 23 N -0.327 5.327 24 C 0.303 3.697 25 O -0.372 6.372 26 C -0.054 4.054 27 N -0.377 5.377 28 C 0.393 3.607 29 O -0.462 6.462 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.195 0.805 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.169 0.831 46 H 0.178 0.822 47 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -1.602 -6.603 -35.878 36.516 hybrid contribution 0.412 1.782 0.590 1.921 sum -1.190 -4.822 -35.288 35.636 Atomic orbital electron populations 1.21948 0.94373 1.02454 1.01642 1.21653 0.94860 0.95640 0.85577 0.93292 1.21432 0.95430 0.90853 0.85993 0.90903 1.42720 1.81245 1.11963 1.02778 1.18999 1.36256 0.97639 0.82546 0.91450 1.25373 1.02760 1.01850 0.95056 1.69846 1.56473 1.36542 1.00037 0.85556 0.77899 0.81372 0.77788 1.20940 1.22189 1.18311 1.23374 0.98735 1.01391 0.95566 1.22565 0.96078 0.87931 0.95135 1.48662 1.52157 1.29237 1.04414 1.21061 0.79819 0.85112 0.82971 1.90674 1.42368 1.30096 1.83860 1.21562 1.03992 1.00672 0.89924 1.21512 1.00968 0.99292 0.93115 1.21771 1.02506 0.97687 0.78226 1.46491 1.24080 1.39491 1.22617 1.21597 0.79585 0.81967 0.86514 1.90833 1.38913 1.34217 1.73279 1.22726 0.89680 0.95808 0.97205 1.45428 1.24682 1.45794 1.21801 1.16109 0.83067 0.79475 0.82005 1.91015 1.23718 1.60120 1.71383 0.92241 0.92937 0.91390 0.80452 0.93362 0.91907 0.89481 0.87405 0.88767 0.85966 0.85282 0.92467 0.93151 0.87611 0.86718 0.83060 0.82171 0.69959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.11 71.98 0.66 -4.03 16 2 C 0.13 4.22 3.20 45.34 0.15 4.36 16 3 H 0.05 1.85 7.72 -2.39 -0.02 1.83 16 4 C 0.17 6.11 3.14 46.18 0.15 6.26 16 5 H 0.07 2.65 7.80 -2.39 -0.02 2.63 16 6 N -0.74 -33.80 5.03 -317.32 -1.60 -35.39 16 7 C -0.22 -12.27 10.44 84.03 0.88 -11.39 16 8 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 9 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 10 N -0.98 -61.76 13.97 21.65 0.30 -61.46 16 11 Si 0.95 45.90 27.74 68.60 1.90 47.80 16 12 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 15 C -0.15 -4.24 6.77 31.99 0.22 -4.02 16 16 C 0.10 2.06 6.69 86.85 0.58 2.64 16 17 N -0.61 -16.22 3.07 -788.06 -2.42 -18.63 16 18 C 0.52 13.98 7.64 87.66 0.67 14.65 16 19 O -0.59 -21.20 15.03 -3.05 -0.05 -21.24 16 20 C -0.12 -1.94 4.71 29.85 0.14 -1.80 16 21 C -0.11 -2.06 4.83 30.60 0.15 -1.91 16 22 C 0.12 1.63 5.70 86.38 0.49 2.12 16 23 N -0.58 -8.49 2.60 -773.13 -2.01 -10.50 16 24 C 0.51 6.29 8.31 87.94 0.73 7.02 16 25 O -0.50 -9.40 17.75 -2.88 -0.05 -9.45 16 26 C 0.07 0.14 7.97 85.76 0.68 0.83 16 27 N -0.71 -4.36 6.58 -480.31 -3.16 -7.53 16 28 C 0.69 11.12 8.62 179.44 1.55 12.66 16 29 O -0.59 -14.54 17.48 -3.86 -0.07 -14.61 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.78 6.90 -2.39 -0.02 1.76 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.36 16.47 5.42 -92.70 -0.50 15.96 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.11 1.42 7.48 -2.39 -0.02 1.40 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.40 7.85 -2.39 -0.02 1.38 16 40 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.11 1.31 7.86 -2.39 -0.02 1.30 16 44 H 0.11 1.17 8.00 -2.39 -0.02 1.15 16 45 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.16 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.45 0.66 8.96 -92.71 -0.83 -0.17 16 Total: -1.00 -85.86 388.31 -0.04 -85.90 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.39 Total: 20.66 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 7.50 Total: 24.46 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -8.89 Total: -133.51 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.16 Total: -45.30 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -85.86 -0.04 -85.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283928293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.935 kcal (2) G-P(sol) polarization free energy of solvation -85.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds