Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00226 * 2 1 4 4 C 1.53002 * 109.46887 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46523 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.46609 * 179.97438 * 5 4 3 7 7 C 1.34995 * 125.97024 * 124.99983 * 6 5 4 8 8 C 1.35215 * 107.87535 * 179.73557 * 7 6 5 9 9 C 1.40455 * 107.86593 * 0.22522 * 8 7 6 10 10 N 1.39943 * 125.97679 * 179.97438 * 9 8 7 11 11 C 1.34771 * 119.99883 * 0.02562 * 10 9 8 12 12 O 1.21389 * 120.00236 * 359.97438 * 11 10 9 13 13 C 1.49346 * 119.99761 * 179.97438 * 11 10 9 14 14 O 1.21360 * 119.99829 * 354.16815 * 13 11 10 15 15 N 1.34772 * 119.99840 * 174.16754 * 13 11 10 16 16 C 1.46504 * 120.00113 * 3.63509 * 15 13 11 17 17 C 1.46497 * 120.00142 * 183.63253 * 15 13 11 18 18 H 1.08995 * 109.47080 * 0.02562 * 17 15 13 19 19 C 1.53002 * 109.47378 * 240.00421 * 17 15 13 20 20 C 1.50696 * 109.47281 * 120.00028 * 17 15 13 21 21 H 1.08004 * 120.00087 * 0.02562 * 20 17 15 22 22 C 1.37881 * 120.00063 * 180.02562 * 20 17 15 23 23 N 1.31514 * 119.99932 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 119.99789 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47471 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47465 * 119.99858 * 24 22 20 27 27 H 1.48505 * 109.46699 * 239.99779 * 24 22 20 28 28 N 1.31269 * 108.04283 * 0.02562 * 9 8 7 29 29 H 1.08998 * 109.47739 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47082 * 299.99985 * 1 2 3 31 31 H 1.09008 * 109.47341 * 59.99855 * 1 2 3 32 32 H 1.08997 * 109.46537 * 60.00008 * 3 2 1 33 33 H 1.09003 * 109.46958 * 300.00125 * 3 2 1 34 34 H 1.08994 * 109.47043 * 60.00422 * 4 3 2 35 35 H 1.08992 * 109.46938 * 299.99977 * 4 3 2 36 36 H 1.08994 * 109.47169 * 60.00435 * 5 4 3 37 37 H 1.08992 * 109.47442 * 299.99604 * 5 4 3 38 38 H 1.08003 * 126.05944 * 359.97438 * 7 6 5 39 39 H 1.08000 * 126.06140 * 180.25435 * 8 7 6 40 40 H 0.96999 * 119.99668 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47243 * 83.99444 * 16 15 13 42 42 H 1.08998 * 109.47084 * 203.99268 * 16 15 13 43 43 H 1.08998 * 109.47151 * 323.99500 * 16 15 13 44 44 H 1.09001 * 109.47000 * 299.99528 * 19 17 15 45 45 H 1.09001 * 109.47325 * 59.99759 * 19 17 15 46 46 H 1.09001 * 109.47424 * 180.02562 * 19 17 15 47 47 H 0.96996 * 119.99894 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4665 0.0025 7 6 6.4589 3.0286 -0.8917 8 6 7.7212 2.6917 -0.5432 9 6 7.6509 1.8878 0.6064 10 7 8.7388 1.3293 1.2868 11 6 9.9935 1.5483 0.8463 12 8 10.1800 2.2295 -0.1410 13 6 11.1545 0.9527 1.5728 14 8 10.9778 0.3611 2.6176 15 7 12.3984 1.0723 1.0681 16 6 12.6225 1.8539 -0.1506 17 6 13.5266 0.4208 1.7382 18 1 13.1680 -0.1104 2.6198 19 6 14.5490 1.4780 2.1599 20 6 14.1757 -0.5570 0.7929 21 1 13.7871 -0.6804 -0.2073 22 6 15.2658 -1.2940 1.2047 23 7 15.7393 -1.1434 2.4223 24 14 16.0708 -2.5054 0.0326 25 1 15.3541 -2.4870 -1.2678 26 1 17.4898 -2.1218 -0.1783 27 1 16.0083 -3.8712 0.6125 28 7 6.3861 1.7511 0.9301 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8567 0.6437 0.8908 36 1 3.8358 3.1229 0.8913 37 1 3.8366 3.1234 -0.8886 38 1 6.1740 3.6421 -1.7336 39 1 8.6234 2.9886 -1.0573 40 1 8.5898 0.7853 2.0759 41 1 12.7217 2.9083 0.1071 42 1 13.5350 1.5119 -0.6389 43 1 11.7776 1.7230 -0.8267 44 1 14.9077 2.0087 1.2780 45 1 14.0795 2.1852 2.8437 46 1 15.3886 0.9931 2.6580 47 1 16.5064 -1.6616 2.7119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326082359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = -11.910572 kcal Electronic energy + Delta-G solvation = -28631.269077 eV Core-core repulsion = 24431.561472 eV Total energy + Delta-G solvation = -4199.707605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51636 -40.22114 -38.49088 -38.07852 -36.00586 -35.28511 -34.09954 -32.75917 -30.74971 -30.06553 -29.52003 -27.38399 -26.34521 -25.62901 -25.26195 -24.39034 -22.36854 -21.93783 -21.00667 -20.08650 -19.07745 -17.65491 -17.21402 -16.90436 -16.72064 -16.35211 -16.29241 -15.96904 -15.48081 -15.39128 -15.12452 -14.98460 -14.46293 -14.40341 -13.75373 -13.60003 -13.21095 -13.10804 -12.79888 -12.69307 -12.50627 -12.36173 -12.23834 -11.78368 -11.63216 -11.61259 -11.48477 -11.11165 -10.94179 -10.86447 -10.77512 -10.72388 -10.53279 -10.27551 -10.20640 -10.17970 -9.22669 -8.94528 -8.81145 -8.47061 -8.33163 -7.73794 -6.12074 -4.20404 1.44577 1.93505 1.97227 2.80319 2.90235 3.25394 3.28388 3.33650 3.37506 3.74088 3.99842 4.20950 4.36829 4.48547 4.55443 4.63553 4.66980 4.79958 4.81388 4.87066 4.90085 4.96097 5.19719 5.20108 5.22093 5.53035 5.58518 5.68281 5.76318 5.97874 6.14117 6.23587 6.57598 6.64003 6.68780 6.75861 6.77506 6.89995 6.93473 6.99897 7.22761 7.38520 7.65503 7.71883 7.88178 7.99279 8.08867 8.33925 8.58618 8.85373 9.45872 10.93446 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.001920 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.979392 B =14583.301169 C =15157.466727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.135 4.135 5 C 0.146 3.854 6 N -0.371 5.371 7 C 0.061 3.939 8 C -0.264 4.264 9 C 0.303 3.697 10 N -0.615 5.615 11 C 0.519 3.481 12 O -0.494 6.494 13 C 0.498 3.502 14 O -0.534 6.534 15 N -0.549 5.549 16 C 0.068 3.932 17 C 0.254 3.746 18 H 0.067 0.933 19 C -0.146 4.146 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.901 3.099 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 N -0.317 5.317 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.427 0.573 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.033 0.967 45 H 0.013 0.987 46 H 0.096 0.904 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.759 9.863 -7.159 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.173 4.173 5 C 0.024 3.976 6 N -0.155 5.155 7 C -0.085 4.085 8 C -0.294 4.294 9 C 0.047 3.953 10 N -0.265 5.265 11 C 0.302 3.698 12 O -0.366 6.366 13 C 0.278 3.722 14 O -0.413 6.413 15 N -0.279 5.279 16 C -0.075 4.075 17 C 0.154 3.846 18 H 0.085 0.915 19 C -0.205 4.205 20 C -0.567 4.567 21 H 0.081 0.919 22 C -0.137 4.137 23 N -0.524 5.524 24 Si 0.729 3.271 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.209 1.209 28 N -0.147 5.147 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.194 0.806 39 H 0.192 0.808 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.115 0.885 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.277 9.305 -6.397 28.600 hybrid contribution 0.675 -0.287 -0.825 1.104 sum -25.602 9.018 -7.221 28.088 Atomic orbital electron populations 1.22765 0.80698 1.03031 1.00008 1.87906 1.19936 1.27622 1.95418 1.22396 0.93298 0.85138 1.00411 1.21783 0.93199 0.96837 1.05457 1.21477 0.74425 0.97773 1.03934 1.48094 1.05756 1.40177 1.21471 1.22600 0.89918 0.99840 0.96093 1.21920 0.98652 1.08109 1.00713 1.19169 0.86998 0.95747 0.93378 1.42428 1.02731 1.50680 1.30694 1.20933 0.83579 0.80790 0.84524 1.90571 1.84266 1.36751 1.25003 1.19423 0.84031 0.82772 0.86011 1.90738 1.84406 1.43244 1.22877 1.48257 1.06485 1.47297 1.25873 1.22202 1.03910 0.94265 0.87156 1.19202 0.80736 0.90495 0.94124 0.91493 1.22086 1.01727 0.97542 0.99111 1.21325 1.13819 1.21980 0.99570 0.91859 1.24890 0.96582 0.96864 0.95367 1.69885 1.24738 1.40864 1.16909 0.86389 0.79053 0.80790 0.80885 1.19705 1.20861 1.20874 1.77376 1.00786 1.21276 1.15298 0.89439 0.93930 0.94005 0.92884 0.93060 0.90342 0.89269 0.89640 0.88346 0.80587 0.80827 0.73521 0.93371 0.90379 0.89215 0.94799 0.96755 0.88523 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.36 10.70 -35.23 -0.38 -3.73 16 3 C 0.06 0.39 5.94 37.16 0.22 0.61 16 4 C -0.13 -1.01 5.77 -26.73 -0.15 -1.16 16 5 C 0.15 0.92 6.51 -4.04 -0.03 0.90 16 6 N -0.37 -3.92 3.68 -61.38 -0.23 -4.15 16 7 C 0.06 0.61 11.43 -17.24 -0.20 0.41 16 8 C -0.26 -3.55 9.60 -39.82 -0.38 -3.93 16 9 C 0.30 4.58 8.10 -154.54 -1.25 3.33 16 10 N -0.62 -9.77 5.43 -11.58 -0.06 -9.83 16 11 C 0.52 9.19 7.74 -11.64 -0.09 9.10 16 12 O -0.49 -8.62 10.26 5.46 0.06 -8.56 16 13 C 0.50 10.43 7.73 -11.64 -0.09 10.34 16 14 O -0.53 -12.40 15.82 5.49 0.09 -12.31 16 15 N -0.55 -11.99 2.75 -175.82 -0.48 -12.47 16 16 C 0.07 1.25 8.49 59.85 0.51 1.76 16 17 C 0.25 6.41 2.63 -69.08 -0.18 6.23 16 18 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 19 C -0.15 -3.47 8.97 37.16 0.33 -3.13 16 20 C -0.53 -14.10 7.95 -34.44 -0.27 -14.38 16 21 H 0.06 1.67 7.44 -52.48 -0.39 1.28 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.62 11.32 55.43 0.63 -24.00 16 24 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 N -0.32 -4.48 12.43 31.41 0.39 -4.09 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.17 8.14 -51.92 -0.42 -0.26 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.31 8.07 -51.93 -0.42 -0.11 16 38 H 0.18 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.17 2.45 5.91 -52.49 -0.31 2.14 16 40 H 0.43 6.43 8.31 -40.82 -0.34 6.09 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 43 H 0.09 1.58 5.35 -51.94 -0.28 1.31 16 44 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 47 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -32.58 391.05 -6.65 -39.22 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.96 Total: 5.16 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -0.57 Total: 13.03 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.25 Total: -54.53 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.23 Total: -24.60 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.58 -6.65 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326082359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.312 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds