Wall clock time and date at job start Tue Mar 31 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 11 11 C 1.34768 * 120.00311 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00261 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99847 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47052 * 180.02562 * 14 13 11 16 16 C 1.34511 * 125.79248 * 89.99684 * 15 14 13 17 17 C 1.41389 * 106.84360 * 180.02562 * 16 15 14 18 18 C 1.34514 * 106.83841 * 0.02562 * 17 16 15 19 19 O 1.34307 * 125.78626 * 269.69780 * 15 14 13 20 20 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 21 21 C 1.36941 * 120.00103 * 84.99785 * 20 2 1 22 22 H 1.08000 * 119.99734 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99814 * 180.02562 * 21 20 2 24 24 N 1.31613 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47202 * 59.99527 * 25 23 21 27 27 H 1.48499 * 109.46834 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46977 * 299.99495 * 25 23 21 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 38 38 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 39 39 H 0.97006 * 119.99455 * 0.02562 * 10 9 7 40 40 H 0.96998 * 119.99726 * 0.02562 * 13 11 10 41 41 H 1.09005 * 109.47439 * 300.00272 * 14 13 11 42 42 H 1.09000 * 109.46939 * 60.00744 * 14 13 11 43 43 H 1.07998 * 126.57793 * 0.04556 * 16 15 14 44 44 H 1.08000 * 126.58124 * 179.97438 * 17 16 15 45 45 H 1.07998 * 125.79107 * 180.02562 * 18 17 16 46 46 H 0.97003 * 120.00235 * 265.00555 * 20 2 1 47 47 H 0.96996 * 120.00501 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 7 7.3364 -1.9462 4.0677 11 6 8.0092 -2.5102 5.0902 12 8 7.4046 -3.1052 5.9613 13 7 9.3525 -2.4157 5.1466 14 6 10.0840 -3.0293 6.2578 15 6 11.5603 -2.7805 6.0856 16 6 12.2414 -1.7247 6.5659 17 6 13.5890 -1.8933 6.1727 18 6 13.6507 -3.0417 5.4751 19 8 12.4201 -3.5783 5.4313 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9242 -1.9386 -3.4505 25 14 2.7902 0.2706 -5.1183 26 1 3.7461 1.3924 -4.9367 27 1 3.2990 -0.6478 -6.1685 28 1 1.4682 0.8084 -5.5285 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 5.4421 -1.5889 4.8935 38 1 5.5874 -3.0996 3.9633 39 1 7.8187 -1.4712 3.3729 40 1 9.8349 -1.9414 4.4514 41 1 9.7494 -2.5920 7.1985 42 1 9.8949 -4.1027 6.2684 43 1 11.8367 -0.9056 7.1417 44 1 14.4110 -1.2273 6.3899 45 1 14.5399 -3.4640 5.0309 46 1 2.2489 -1.6317 -1.1529 47 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328458192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:19 Heat of formation + Delta-G solvation = -41.058745 kcal Electronic energy + Delta-G solvation = -27563.685093 eV Core-core repulsion = 23362.713529 eV Total energy + Delta-G solvation = -4200.971564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.04028 -40.44501 -39.42333 -36.69041 -35.52840 -34.68385 -34.35484 -33.41638 -32.30200 -30.98422 -29.67186 -28.48218 -27.42483 -25.75027 -23.83760 -22.58056 -22.22271 -21.22612 -21.06203 -20.74055 -19.78638 -19.10491 -17.96905 -17.24569 -16.93693 -16.54181 -16.31498 -16.26488 -15.60157 -15.47669 -15.05667 -14.85869 -14.39454 -14.32151 -14.10413 -13.73314 -13.49262 -13.29792 -13.25018 -13.21657 -13.09512 -12.60363 -12.50854 -12.31978 -12.06167 -11.56966 -11.11552 -10.93727 -10.76109 -10.67563 -10.61938 -10.38981 -10.32643 -10.09019 -9.82151 -9.66632 -9.63994 -9.20440 -9.05980 -8.96638 -8.87441 -6.95922 -5.75336 -3.04199 1.09707 2.03668 2.35842 2.55464 2.59093 2.92242 3.25230 3.45326 3.49921 3.50609 4.01694 4.10906 4.55109 4.58441 4.60042 4.61282 4.92343 5.06989 5.14420 5.18238 5.25295 5.32926 5.37117 5.46118 5.54942 5.59193 5.65293 5.85170 5.97268 6.01313 6.04227 6.09135 6.15375 6.30978 6.36851 6.41350 6.55212 6.62560 6.64975 6.67518 6.84999 7.05061 7.47313 7.69022 7.71145 8.16099 8.27456 8.42958 9.54279 10.10758 10.45252 11.47142 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.001660 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.934165 B =16860.836285 C =18306.882460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.122 3.878 6 N -0.721 5.721 7 C 0.503 3.497 8 O -0.536 6.536 9 C 0.120 3.880 10 N -0.731 5.731 11 C 0.711 3.289 12 O -0.592 6.592 13 N -0.745 5.745 14 C 0.224 3.776 15 C -0.039 4.039 16 C -0.182 4.182 17 C -0.219 4.219 18 C -0.028 4.028 19 O -0.171 6.171 20 N -0.723 5.723 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.410 0.590 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.205 0.795 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.573 -1.167 23.452 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C -0.001 4.001 6 N -0.373 5.373 7 C 0.288 3.712 8 O -0.413 6.413 9 C -0.008 4.008 10 N -0.390 5.390 11 C 0.411 3.589 12 O -0.470 6.470 13 N -0.402 5.402 14 C 0.100 3.900 15 C -0.089 4.089 16 C -0.202 4.202 17 C -0.238 4.238 18 C -0.096 4.096 19 O -0.066 6.066 20 N -0.365 5.365 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.169 0.831 44 H 0.168 0.832 45 H 0.222 0.778 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.483 -1.478 23.406 28.103 hybrid contribution 0.493 0.587 -1.297 1.507 sum 15.976 -0.891 22.109 27.291 Atomic orbital electron populations 1.22425 0.99098 1.00858 0.99974 1.20153 0.91917 0.95571 0.86008 0.93289 1.22066 0.93722 1.01935 0.99432 1.21511 0.94586 0.97173 0.86814 1.46010 1.06795 1.56734 1.27711 1.20433 0.83118 0.80751 0.86885 1.90733 1.55134 1.45945 1.49474 1.20908 0.80676 1.02199 0.97032 1.44714 1.06733 1.60086 1.27454 1.15685 0.81324 0.79677 0.82197 1.90945 1.67727 1.48026 1.40342 1.45086 1.05190 1.61066 1.28838 1.19377 0.80526 0.99975 0.90106 1.22300 0.92574 0.92754 1.01281 1.21745 0.93772 0.99926 1.04773 1.21910 0.97952 0.99717 1.04233 1.24179 0.86554 0.95668 1.03226 1.84065 1.17585 1.45299 1.59679 1.42446 1.78118 1.10636 1.05343 1.19177 1.36681 0.93817 0.87363 0.91257 1.24727 1.02143 0.95957 0.98047 1.69636 1.50814 1.08656 1.28977 0.86292 0.77726 0.78651 0.83657 1.21275 1.21758 1.21345 0.93503 0.94559 0.92730 0.91487 0.91818 0.91653 0.89529 0.76625 0.88468 0.88356 0.75273 0.76398 0.88265 0.89657 0.83075 0.83154 0.77823 0.78294 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.23 2.89 -67.93 -0.20 3.03 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.91 4.87 -26.74 -0.13 -2.04 16 5 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 6 N -0.72 -8.66 5.56 -60.29 -0.33 -8.99 16 7 C 0.50 6.58 7.90 -10.99 -0.09 6.49 16 8 O -0.54 -9.19 15.67 5.56 0.09 -9.10 16 9 C 0.12 1.23 6.15 -5.19 -0.03 1.20 16 10 N -0.73 -7.83 5.53 -66.41 -0.37 -8.20 16 11 C 0.71 8.05 8.57 -86.92 -0.74 7.30 16 12 O -0.59 -8.49 16.34 5.29 0.09 -8.40 16 13 N -0.74 -6.38 5.55 -66.41 -0.37 -6.75 16 14 C 0.22 1.73 6.20 -5.19 -0.03 1.69 16 15 C -0.04 -0.30 6.69 -35.63 -0.24 -0.54 16 16 C -0.18 -1.25 10.81 -39.70 -0.43 -1.68 16 17 C -0.22 -1.36 10.91 -39.70 -0.43 -1.79 16 18 C -0.03 -0.17 12.09 29.42 0.36 0.19 16 19 O -0.17 -1.42 10.65 5.68 0.06 -1.36 16 20 N -0.72 -17.37 4.57 -53.43 -0.24 -17.61 16 21 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 25 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.71 7.75 -51.93 -0.40 1.31 16 36 H 0.40 3.44 8.47 -40.82 -0.35 3.09 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.41 4.32 7.45 -40.82 -0.30 4.02 16 40 H 0.40 2.86 8.48 -40.82 -0.35 2.51 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.38 9.83 7.80 -40.82 -0.32 9.52 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -35.49 405.13 -8.34 -43.83 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.18 Total: 14.19 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.88 Total: 6.16 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.59 Total: -68.86 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.23 Total: -18.87 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.49 -8.34 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328458192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.772 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds