Wall clock time and date at job start Tue Mar 31 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.47396 * 180.02562 * 9 7 6 11 11 C 1.34768 * 120.00311 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00261 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99847 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47052 * 180.02562 * 14 13 11 16 16 C 1.34511 * 125.79248 * 89.99684 * 15 14 13 17 17 C 1.41389 * 106.84360 * 180.02562 * 16 15 14 18 18 C 1.34514 * 106.83841 * 0.02562 * 17 16 15 19 19 O 1.34307 * 125.78626 * 269.69780 * 15 14 13 20 20 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 21 21 C 1.36941 * 120.00103 * 84.99785 * 20 2 1 22 22 H 1.08000 * 119.99734 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99814 * 180.02562 * 21 20 2 24 24 N 1.31613 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99795 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47202 * 59.99527 * 25 23 21 27 27 H 1.48499 * 109.46834 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46977 * 299.99495 * 25 23 21 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 31 31 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 37 37 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 38 38 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 39 39 H 0.97006 * 119.99455 * 0.02562 * 10 9 7 40 40 H 0.96998 * 119.99726 * 0.02562 * 13 11 10 41 41 H 1.09005 * 109.47439 * 300.00272 * 14 13 11 42 42 H 1.09000 * 109.46939 * 60.00744 * 14 13 11 43 43 H 1.07998 * 126.57793 * 0.04556 * 16 15 14 44 44 H 1.08000 * 126.58124 * 179.97438 * 17 16 15 45 45 H 1.07998 * 125.79107 * 180.02562 * 18 17 16 46 46 H 0.97003 * 120.00235 * 265.00555 * 20 2 1 47 47 H 0.96996 * 120.00501 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 7 7.3364 -1.9462 4.0677 11 6 8.0092 -2.5102 5.0902 12 8 7.4046 -3.1052 5.9613 13 7 9.3525 -2.4157 5.1466 14 6 10.0840 -3.0293 6.2578 15 6 11.5603 -2.7805 6.0856 16 6 12.2414 -1.7247 6.5659 17 6 13.5890 -1.8933 6.1727 18 6 13.6507 -3.0417 5.4751 19 8 12.4201 -3.5783 5.4313 20 7 2.0183 -0.6905 -1.1963 21 6 2.1490 -0.0072 -2.3758 22 1 1.8925 1.0408 -2.4241 23 6 2.6112 -0.6616 -3.5094 24 7 2.9242 -1.9386 -3.4505 25 14 2.7902 0.2706 -5.1183 26 1 3.7461 1.3924 -4.9367 27 1 3.2990 -0.6478 -6.1685 28 1 1.4682 0.8084 -5.5285 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.7516 -1.7716 1.2053 33 1 1.6054 -0.2620 2.1368 34 1 3.8532 0.4368 1.3572 35 1 3.9994 -1.0729 0.4257 36 1 3.4258 -1.7353 3.1108 37 1 5.4421 -1.5889 4.8935 38 1 5.5874 -3.0996 3.9633 39 1 7.8187 -1.4712 3.3729 40 1 9.8349 -1.9414 4.4514 41 1 9.7494 -2.5920 7.1985 42 1 9.8949 -4.1027 6.2684 43 1 11.8367 -0.9056 7.1417 44 1 14.4110 -1.2273 6.3899 45 1 14.5399 -3.4640 5.0309 46 1 2.2489 -1.6317 -1.1529 47 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328458192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:19 Heat of formation + Delta-G solvation = -69.339371 kcal Electronic energy + Delta-G solvation = -27564.911433 eV Core-core repulsion = 23362.713529 eV Total energy + Delta-G solvation = -4202.197904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.55340 -41.38761 -40.46774 -38.16118 -36.29449 -35.92505 -35.44037 -34.14558 -33.93142 -31.71255 -31.10200 -29.95355 -28.38376 -26.45838 -25.77222 -23.89761 -22.71939 -22.11763 -21.87887 -21.57764 -21.16555 -19.97049 -19.24786 -18.59839 -17.67898 -17.49097 -17.22089 -17.11442 -16.83448 -16.45784 -16.36503 -15.76640 -15.66639 -15.39575 -15.20069 -15.07560 -14.75139 -14.38006 -14.22979 -14.07067 -13.77567 -13.56291 -13.55255 -13.53086 -13.22439 -12.96130 -12.78523 -12.61373 -12.30933 -12.22558 -12.10973 -11.65785 -11.59190 -11.56999 -11.06344 -10.90884 -10.90192 -10.53422 -10.14843 -9.92586 -9.56230 -8.96240 -7.91513 -5.17995 0.55466 1.43920 1.46576 1.49168 1.50141 1.54727 1.73308 2.00718 2.05664 2.29427 2.57941 3.24936 3.42495 3.60038 3.65179 3.94184 4.03016 4.09877 4.13988 4.24820 4.33642 4.35973 4.38250 4.42243 4.50977 4.69251 4.80265 4.87840 4.90153 4.99255 5.04980 5.12118 5.13146 5.21501 5.25417 5.29457 5.41804 5.42841 5.55355 5.55497 5.63757 5.81026 6.15082 6.31462 6.48520 6.88686 7.16721 7.37549 7.41669 8.16204 8.37078 9.31671 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.001660 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.934165 B =16860.836285 C =18306.882460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.117 4.117 5 C 0.133 3.867 6 N -0.706 5.706 7 C 0.504 3.496 8 O -0.581 6.581 9 C 0.128 3.872 10 N -0.732 5.732 11 C 0.711 3.289 12 O -0.623 6.623 13 N -0.735 5.735 14 C 0.226 3.774 15 C -0.056 4.056 16 C -0.184 4.184 17 C -0.231 4.231 18 C -0.029 4.029 19 O -0.191 6.191 20 N -0.734 5.734 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.282 1.282 27 H -0.298 1.298 28 H -0.278 1.278 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.420 0.580 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.410 0.590 40 H 0.409 0.591 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.163 0.837 44 H 0.169 0.831 45 H 0.236 0.764 46 H 0.372 0.628 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.453 -0.324 25.247 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.009 3.991 6 N -0.358 5.358 7 C 0.291 3.709 8 O -0.461 6.461 9 C 0.000 4.000 10 N -0.390 5.390 11 C 0.411 3.589 12 O -0.504 6.504 13 N -0.391 5.391 14 C 0.103 3.897 15 C -0.105 4.105 16 C -0.204 4.204 17 C -0.250 4.250 18 C -0.097 4.097 19 O -0.088 6.088 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.208 1.208 27 H -0.225 1.225 28 H -0.204 1.204 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.258 0.742 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.248 0.752 40 H 0.244 0.756 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.181 0.819 44 H 0.187 0.813 45 H 0.252 0.748 46 H 0.204 0.796 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.329 -0.600 25.254 29.549 hybrid contribution 0.565 0.380 -1.764 1.891 sum 15.894 -0.221 23.490 28.363 Atomic orbital electron populations 1.22268 0.97250 1.01005 1.00814 1.20471 0.93086 0.95273 0.85738 0.93871 1.21919 0.92549 1.02153 0.98890 1.21133 0.95318 0.96274 0.86364 1.45768 1.07067 1.56176 1.26820 1.20930 0.82896 0.79980 0.87132 1.90718 1.56294 1.47932 1.51165 1.20937 0.80519 1.02528 0.95989 1.44737 1.07021 1.59939 1.27307 1.15764 0.81924 0.79402 0.81836 1.90920 1.68527 1.49477 1.41459 1.45056 1.04403 1.60504 1.29167 1.19377 0.80830 0.99470 0.90016 1.22264 0.92457 0.93364 1.02442 1.22018 0.94244 0.99826 1.04279 1.22235 0.98198 1.00245 1.04316 1.24887 0.86578 0.95595 1.02618 1.84051 1.18534 1.46021 1.60162 1.42645 1.78375 1.10227 1.06281 1.19570 1.34410 0.94081 0.88505 0.90824 1.25481 1.03405 0.96868 1.01305 1.69792 1.52897 1.10121 1.29237 0.85315 0.77892 0.77319 0.79897 1.20797 1.22491 1.20370 0.93681 0.90566 0.95020 0.90923 0.87512 0.92715 0.94386 0.74180 0.86295 0.87172 0.75214 0.75554 0.87553 0.90444 0.81914 0.81302 0.74813 0.79636 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.83 2.89 44.99 0.13 5.96 16 3 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 4 C -0.12 -3.09 4.87 30.59 0.15 -2.95 16 5 C 0.13 4.06 5.56 86.38 0.48 4.54 16 6 N -0.71 -15.86 5.56 -463.06 -2.57 -18.44 16 7 C 0.50 12.78 7.90 87.66 0.69 13.47 16 8 O -0.58 -20.19 15.67 -3.03 -0.05 -20.24 16 9 C 0.13 2.42 6.15 85.63 0.53 2.95 16 10 N -0.73 -15.12 5.53 -482.29 -2.67 -17.79 16 11 C 0.71 15.61 8.57 179.06 1.53 17.14 16 12 O -0.62 -17.38 16.34 -4.00 -0.07 -17.45 16 13 N -0.73 -12.27 5.55 -482.29 -2.68 -14.95 16 14 C 0.23 3.44 6.20 85.63 0.53 3.97 16 15 C -0.06 -0.83 6.69 24.83 0.17 -0.66 16 16 C -0.18 -2.34 10.81 22.19 0.24 -2.10 16 17 C -0.23 -2.52 10.91 22.19 0.24 -2.28 16 18 C -0.03 -0.31 12.09 66.97 0.81 0.50 16 19 O -0.19 -3.09 10.65 -2.61 -0.03 -3.12 16 20 N -0.73 -35.58 4.57 -322.95 -1.48 -37.06 16 21 C -0.23 -12.85 9.93 84.03 0.83 -12.01 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 24 N -0.97 -59.84 13.06 21.65 0.28 -59.55 16 25 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 36 H 0.42 6.00 8.47 -92.71 -0.79 5.22 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.41 8.57 7.45 -92.70 -0.69 7.88 16 40 H 0.41 5.67 8.48 -92.71 -0.79 4.88 16 41 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.24 0.68 8.06 -2.91 -0.02 0.65 16 46 H 0.37 19.52 7.80 -92.71 -0.72 18.80 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -78.91 405.13 -1.70 -80.61 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -1.96 Total: 38.83 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 7.49 Total: 20.26 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -9.11 Total: -147.79 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.14 Total: -40.80 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -78.91 -1.70 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328458192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.272 kcal (2) G-P(sol) polarization free energy of solvation -78.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds