Wall clock time and date at job start Tue Mar 31 2020 22:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35851 * 116.99700 * 2 1 4 4 N 1.30815 * 126.05815 * 359.97438 * 3 2 1 5 5 N 1.39925 * 108.87659 * 180.02562 * 4 3 2 6 6 C 1.46497 * 125.68274 * 179.97438 * 5 4 3 7 7 C 1.34156 * 108.62373 * 359.72297 * 5 4 3 8 8 C 1.38133 * 107.51078 * 0.43161 * 7 5 4 9 9 C 1.47250 * 126.44902 * 179.83486 * 8 7 5 10 10 O 1.21624 * 120.00341 * 132.13338 * 9 8 7 11 11 N 1.34778 * 119.99788 * 312.40541 * 9 8 7 12 12 C 1.47147 * 120.98348 * 4.00668 * 11 9 8 13 13 C 1.53296 * 108.38908 * 230.51170 * 12 11 9 14 14 O 1.42967 * 109.21963 * 307.70041 * 13 12 11 15 15 C 1.42958 * 114.16793 * 62.57568 * 14 13 12 16 16 H 1.09000 * 109.51618 * 57.39394 * 15 14 13 17 17 C 1.53004 * 109.51069 * 177.49547 * 15 14 13 18 18 H 1.09005 * 109.46707 * 175.00353 * 17 15 14 19 19 C 1.52993 * 109.47069 * 55.00466 * 17 15 14 20 20 N 1.46496 * 109.47166 * 294.99559 * 17 15 14 21 21 C 1.36936 * 120.00379 * 204.99839 * 20 17 15 22 22 H 1.07997 * 119.99686 * 0.02562 * 21 20 17 23 23 C 1.38812 * 120.00127 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99945 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 59.99622 * 25 23 21 27 27 H 1.48493 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46958 * 299.99738 * 25 23 21 29 29 C 1.47154 * 120.98307 * 183.72193 * 11 9 8 30 30 H 1.08997 * 109.47253 * 60.00260 * 1 2 3 31 31 H 1.09002 * 109.46554 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47552 * 299.99895 * 1 2 3 33 33 H 1.09002 * 109.47308 * 90.02351 * 6 5 4 34 34 H 1.09000 * 109.46889 * 210.02376 * 6 5 4 35 35 H 1.08999 * 109.47359 * 330.02120 * 6 5 4 36 36 H 1.08007 * 126.24465 * 180.28769 * 7 5 4 37 37 H 1.09005 * 109.68138 * 350.23501 * 12 11 9 38 38 H 1.09004 * 109.68506 * 110.78585 * 12 11 9 39 39 H 1.09003 * 109.51316 * 67.61534 * 13 12 11 40 40 H 1.08990 * 109.51925 * 187.72492 * 13 12 11 41 41 H 1.09001 * 109.46807 * 299.99346 * 19 17 15 42 42 H 1.08994 * 109.47614 * 59.99629 * 19 17 15 43 43 H 1.09001 * 109.47130 * 180.02562 * 19 17 15 44 44 H 0.97006 * 119.99821 * 25.00503 * 20 17 15 45 45 H 0.97003 * 119.99740 * 180.02562 * 24 23 21 46 46 H 1.08990 * 109.68261 * 249.21500 * 29 11 9 47 47 H 1.09005 * 109.67753 * 9.76873 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4529 2.3766 -0.0005 5 7 2.4281 3.3801 -0.0009 6 6 2.1702 4.8222 -0.0020 7 6 3.6384 2.8014 0.0055 8 6 3.4451 1.4337 0.0001 9 6 4.4955 0.4017 0.0006 10 8 4.4312 -0.5312 0.7782 11 7 5.5312 0.4940 -0.8570 12 6 5.6803 1.6601 -1.7420 13 6 5.8958 1.1562 -3.1736 14 8 6.9679 0.2105 -3.1834 15 6 6.7197 -0.9636 -2.4065 16 1 5.8120 -1.4508 -2.7626 17 6 7.9023 -1.9250 -2.5414 18 1 7.7535 -2.7790 -1.8805 19 6 9.1943 -1.2015 -2.1567 20 7 7.9973 -2.3908 -3.9271 21 6 8.5972 -3.5896 -4.2069 22 1 8.9998 -4.1918 -3.4060 23 6 8.6877 -4.0307 -5.5200 24 7 8.1974 -3.2964 -6.4961 25 14 9.5053 -5.6663 -5.9016 26 1 8.7775 -6.7578 -5.2058 27 1 9.4730 -5.9059 -7.3667 28 1 10.9150 -5.6357 -5.4355 29 6 6.5496 -0.5656 -0.9316 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.1063 5.1807 1.0254 34 1 2.9823 5.3361 -0.5163 35 1 1.2301 5.0228 -0.5159 36 1 4.5902 3.3118 0.0112 37 1 4.7785 2.2708 -1.6996 38 1 6.5401 2.2519 -1.4278 39 1 4.9846 0.6772 -3.5320 40 1 6.1446 1.9964 -3.8218 41 1 9.3430 -0.3476 -2.8176 42 1 9.1235 -0.8549 -1.1257 43 1 10.0368 -1.8863 -2.2532 44 1 7.6354 -1.8500 -4.6464 45 1 8.2603 -3.6048 -7.4136 46 1 7.4953 -0.1942 -0.5372 47 1 6.2236 -1.4295 -0.3522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330403684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:20 Heat of formation + Delta-G solvation = -0.151677 kcal Electronic energy + Delta-G solvation = -30259.973106 eV Core-core repulsion = 26060.775405 eV Total energy + Delta-G solvation = -4199.197701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87946 -39.95668 -38.54389 -38.09484 -35.44393 -34.42633 -33.27270 -32.46666 -31.02935 -30.02884 -28.44936 -28.20892 -27.32733 -26.28343 -24.69846 -23.47330 -23.11453 -21.64008 -21.31560 -19.74151 -19.52876 -17.78355 -17.39996 -17.08375 -16.66794 -16.25505 -16.06542 -15.68233 -15.43114 -15.29813 -15.10412 -14.96521 -14.43495 -14.37095 -13.95980 -13.47635 -13.28600 -13.22797 -13.15564 -12.90594 -12.69443 -12.46303 -12.20376 -12.11490 -11.92472 -11.48588 -11.26967 -11.16362 -11.06487 -10.78144 -10.67555 -10.46115 -10.24385 -10.02793 -9.77897 -9.75104 -9.58972 -9.40787 -8.83697 -8.78868 -8.35861 -6.87659 -5.68224 -2.96628 1.19772 1.81390 2.07645 2.73191 3.01649 3.16154 3.49614 3.53687 3.54745 4.01748 4.04549 4.28023 4.59077 4.63474 4.64627 4.81184 4.84455 4.90578 4.97527 5.00408 5.01283 5.15687 5.16667 5.24460 5.28581 5.41853 5.46981 5.53545 5.64890 5.74976 5.78807 5.90744 6.05068 6.08348 6.28626 6.36240 6.49488 6.53505 6.71801 6.88891 6.90374 7.21957 7.25912 7.41166 7.54635 7.76636 8.23704 8.50178 9.61842 10.20083 10.56755 11.54263 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.002604 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.064518 B =10751.198036 C =11226.189135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.276 6.276 3 C 0.312 3.688 4 N -0.348 5.348 5 N -0.350 5.350 6 C 0.100 3.900 7 C 0.116 3.884 8 C -0.283 4.283 9 C 0.598 3.402 10 O -0.530 6.530 11 N -0.610 5.610 12 C 0.069 3.931 13 C 0.046 3.954 14 O -0.358 6.358 15 C 0.076 3.924 16 H 0.064 0.936 17 C 0.185 3.815 18 H 0.060 0.940 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.086 3.914 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.191 0.809 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.081 0.919 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.310 20.566 13.958 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.178 6.178 3 C 0.107 3.893 4 N -0.189 5.189 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.036 4.036 8 C -0.298 4.298 9 C 0.386 3.614 10 O -0.406 6.406 11 N -0.344 5.344 12 C -0.055 4.055 13 C -0.032 4.032 14 O -0.276 6.276 15 C 0.017 3.983 16 H 0.082 0.918 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.037 4.037 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.208 0.792 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.099 0.901 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.184 20.295 14.256 28.571 hybrid contribution 0.576 -0.821 -0.441 1.096 sum -13.608 19.473 13.815 27.481 Atomic orbital electron populations 1.23036 0.77282 1.03981 1.02011 1.86440 1.22260 1.20653 1.88445 1.20332 0.89819 0.85327 0.93853 1.77307 1.13104 0.94514 1.33928 1.47671 1.03048 1.06502 1.55966 1.22014 1.04653 0.73416 1.03962 1.23013 0.91239 0.91773 0.97550 1.19545 0.91801 0.92887 1.25595 1.17126 0.79904 0.84483 0.79879 1.90792 1.76450 1.34353 1.38959 1.48027 1.25516 1.21932 1.38904 1.22630 1.02587 0.88614 0.91646 1.22877 0.91971 0.93698 0.94629 1.88087 1.39500 1.29692 1.70357 1.23063 1.00454 0.86372 0.88444 0.91804 1.20201 0.90524 0.92439 0.89444 0.92270 1.22409 1.00036 1.01148 0.98594 1.42351 1.70156 1.22331 1.01233 1.19211 1.29799 0.95815 0.92064 0.91222 1.24731 1.01798 0.98718 0.95729 1.69671 1.51102 1.38218 0.99028 0.86283 0.79257 0.83843 0.76894 1.21314 1.21788 1.21317 1.22566 0.91016 0.91624 0.98454 0.92355 0.87873 0.92387 0.90212 0.88731 0.88757 0.79181 0.89209 0.90459 0.92923 0.88053 0.92483 0.94612 0.92955 0.77689 0.93574 0.90096 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.28 -3.93 10.57 -19.27 -0.20 -4.13 16 3 C 0.31 4.25 7.89 -16.66 -0.13 4.11 16 4 N -0.35 -4.03 11.90 30.79 0.37 -3.67 16 5 N -0.35 -2.82 3.97 -67.60 -0.27 -3.09 16 6 C 0.10 0.29 11.44 59.85 0.68 0.98 16 7 C 0.12 0.95 9.11 -16.57 -0.15 0.80 16 8 C -0.28 -3.62 5.22 -104.95 -0.55 -4.17 16 9 C 0.60 9.24 7.58 -12.60 -0.10 9.14 16 10 O -0.53 -10.22 16.59 5.26 0.09 -10.14 16 11 N -0.61 -8.39 3.01 -173.35 -0.52 -8.91 16 12 C 0.07 0.71 5.94 -3.54 -0.02 0.68 16 13 C 0.05 0.59 6.99 37.31 0.26 0.85 16 14 O -0.36 -6.15 9.24 -35.23 -0.33 -6.47 16 15 C 0.08 1.35 2.62 -26.36 -0.07 1.28 16 16 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.18 3.78 2.77 -67.93 -0.19 3.59 16 18 H 0.06 1.21 8.08 -51.93 -0.42 0.80 16 19 C -0.16 -3.02 9.06 37.15 0.34 -2.68 16 20 N -0.72 -18.58 5.10 -53.43 -0.27 -18.85 16 21 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 25 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.09 1.31 5.82 -3.32 -0.02 1.29 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.19 0.80 7.47 -52.48 -0.39 0.40 16 37 H 0.09 0.73 4.69 -51.93 -0.24 0.48 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 42 H 0.03 0.55 6.41 -51.93 -0.33 0.22 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.39 10.83 7.58 -40.82 -0.31 10.52 16 45 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.08 1.14 6.28 -51.93 -0.33 0.82 16 47 H 0.10 1.64 7.11 -51.93 -0.37 1.27 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -38.20 385.76 -5.71 -43.91 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.98 Total: 5.84 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 0.89 Total: 9.90 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.03 Total: -62.51 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.44 Total: -20.74 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.20 -5.71 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330403684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.761 kcal (2) G-P(sol) polarization free energy of solvation -38.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds