Wall clock time and date at job start Tue Mar 31 2020 22:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35851 * 117.00317 * 2 1 4 4 N 1.30801 * 126.05758 * 0.02562 * 3 2 1 5 5 N 1.39923 * 108.88012 * 180.02562 * 4 3 2 6 6 C 1.46497 * 125.68594 * 179.97438 * 5 4 3 7 7 C 1.34155 * 108.62077 * 359.74704 * 5 4 3 8 8 C 1.38136 * 107.51294 * 0.39566 * 7 5 4 9 9 C 1.47244 * 126.45074 * 179.86782 * 8 7 5 10 10 O 1.21627 * 120.00012 * 141.62838 * 9 8 7 11 11 N 1.34776 * 120.00181 * 321.62981 * 9 8 7 12 12 C 1.47151 * 120.97869 * 354.34568 * 11 9 8 13 13 C 1.53292 * 108.38130 * 230.55235 * 12 11 9 14 14 O 1.42968 * 109.22556 * 307.70080 * 13 12 11 15 15 C 1.42956 * 114.16626 * 62.57792 * 14 13 12 16 16 H 1.09011 * 109.55408 * 57.37060 * 15 14 13 17 17 C 1.52996 * 109.51425 * 177.49336 * 15 14 13 18 18 H 1.09002 * 109.47426 * 184.74380 * 17 15 14 19 19 C 1.52997 * 109.47493 * 304.75334 * 17 15 14 20 20 N 1.46506 * 109.46685 * 64.74958 * 17 15 14 21 21 C 1.36941 * 120.00066 * 155.00372 * 20 17 15 22 22 H 1.07998 * 119.99680 * 359.97438 * 21 20 17 23 23 C 1.38808 * 119.99827 * 180.27326 * 21 20 17 24 24 N 1.31614 * 120.00422 * 359.72649 * 23 21 20 25 25 Si 1.86802 * 119.99679 * 179.71859 * 23 21 20 26 26 H 1.48507 * 109.47036 * 60.00264 * 25 23 21 27 27 H 1.48500 * 109.47366 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47552 * 300.00501 * 25 23 21 29 29 C 1.47153 * 120.98086 * 174.36502 * 11 9 8 30 30 H 1.09004 * 109.46812 * 59.99786 * 1 2 3 31 31 H 1.09004 * 109.47595 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47435 * 300.00084 * 1 2 3 33 33 H 1.08999 * 109.47247 * 90.02867 * 6 5 4 34 34 H 1.09007 * 109.46727 * 210.01970 * 6 5 4 35 35 H 1.08999 * 109.47440 * 330.01979 * 6 5 4 36 36 H 1.07999 * 126.24480 * 180.27113 * 7 5 4 37 37 H 1.08990 * 109.68279 * 350.27750 * 12 11 9 38 38 H 1.09007 * 109.68084 * 110.83536 * 12 11 9 39 39 H 1.09003 * 109.51461 * 67.62506 * 13 12 11 40 40 H 1.09001 * 109.51583 * 187.77365 * 13 12 11 41 41 H 1.09000 * 109.47344 * 179.97438 * 19 17 15 42 42 H 1.09007 * 109.46551 * 299.99288 * 19 17 15 43 43 H 1.09002 * 109.47564 * 59.99130 * 19 17 15 44 44 H 0.97000 * 120.00236 * 334.99481 * 20 17 15 45 45 H 0.96997 * 120.00490 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.68198 * 9.71953 * 29 11 9 47 47 H 1.08997 * 109.71047 * 249.18614 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3765 0.0005 5 7 2.4283 3.3799 -0.0003 6 6 2.1706 4.8220 -0.0006 7 6 3.6386 2.8011 0.0043 8 6 3.4453 1.4334 -0.0010 9 6 4.4955 0.4014 -0.0014 10 8 4.3485 -0.6161 0.6485 11 7 5.6198 0.5843 -0.7218 12 6 5.7685 1.7468 -1.6116 13 6 6.2147 1.2465 -2.9902 14 8 7.3655 0.4119 -2.8382 15 6 7.1339 -0.7698 -2.0679 16 1 6.3308 -1.3501 -2.5225 17 6 8.4112 -1.6109 -2.0255 18 1 8.2108 -2.5503 -1.5103 19 6 8.8781 -1.9016 -3.4532 20 7 9.4568 -0.8751 -1.3102 21 6 10.4761 -1.5548 -0.6984 22 1 10.5089 -2.6334 -0.7429 23 6 11.4636 -0.8579 -0.0159 24 7 11.4233 0.4565 0.0388 25 14 12.8497 -1.7857 0.8253 26 1 13.6003 -2.5757 -0.1836 27 1 13.7677 -0.8185 1.4787 28 1 12.2835 -2.7004 1.8489 29 6 6.7347 -0.3729 -0.6421 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.1077 5.1801 1.0269 34 1 2.9824 5.3361 -0.5154 35 1 1.2302 5.0230 -0.5138 36 1 4.5904 3.3114 0.0092 37 1 4.8140 2.2654 -1.7006 38 1 6.5193 2.4255 -1.2067 39 1 5.4081 0.6743 -3.4485 40 1 6.4636 2.0980 -3.6236 41 1 9.7884 -2.5004 -3.4230 42 1 8.1001 -2.4492 -3.9854 43 1 9.0784 -0.9622 -3.9685 44 1 9.4272 0.0937 -1.2700 45 1 12.1136 0.9435 0.5154 46 1 6.4199 -1.2578 -0.0890 47 1 7.5828 0.0918 -0.1393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330403690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:33 Heat of formation + Delta-G solvation = -0.354461 kcal Electronic energy + Delta-G solvation = -30502.540869 eV Core-core repulsion = 26303.334375 eV Total energy + Delta-G solvation = -4199.206494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79406 -39.83307 -38.49191 -37.98966 -35.41635 -34.37092 -33.18356 -32.25267 -30.97426 -29.91539 -28.32521 -28.19732 -27.64635 -26.29957 -24.13349 -23.48506 -23.13386 -21.57166 -21.21816 -19.66540 -19.48910 -17.67399 -17.32061 -17.12782 -16.58359 -16.17348 -16.02179 -15.50723 -15.37688 -15.20834 -15.13958 -14.62670 -14.49700 -14.16913 -13.82809 -13.42150 -13.25331 -13.17521 -13.10318 -12.96432 -12.63020 -12.30414 -12.17053 -11.88713 -11.75449 -11.42888 -11.29407 -11.13122 -11.06323 -10.77674 -10.73034 -10.38413 -10.24153 -9.96741 -9.79793 -9.64385 -9.50899 -9.32760 -8.86522 -8.71123 -8.20187 -6.87469 -5.69562 -2.97401 1.27306 1.88569 2.13049 2.89885 3.15963 3.34251 3.49460 3.53751 3.54529 4.06220 4.10380 4.40103 4.65246 4.69818 4.72259 4.88630 4.92404 4.97406 5.02150 5.06368 5.08795 5.21507 5.25212 5.28321 5.43493 5.49056 5.53451 5.59018 5.66518 5.76871 5.85476 5.96849 6.12440 6.30072 6.43972 6.47342 6.52277 6.71611 6.75188 6.86395 6.96593 7.21037 7.33635 7.55324 7.60371 7.76918 8.42020 8.49025 9.61186 10.18219 10.55520 11.52836 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002835 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.778042 B = 9875.433446 C =10026.359582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.273 6.273 3 C 0.312 3.688 4 N -0.351 5.351 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.119 3.881 8 C -0.283 4.283 9 C 0.596 3.404 10 O -0.531 6.531 11 N -0.610 5.610 12 C 0.068 3.932 13 C 0.049 3.951 14 O -0.360 6.360 15 C 0.078 3.922 16 H 0.055 0.945 17 C 0.182 3.818 18 H 0.060 0.940 19 C -0.159 4.159 20 N -0.717 5.717 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.089 3.911 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.193 0.807 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.032 0.968 43 H 0.056 0.944 44 H 0.389 0.611 45 H 0.254 0.746 46 H 0.097 0.903 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.999 10.036 -4.418 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.176 6.176 3 C 0.107 3.893 4 N -0.192 5.192 5 N -0.133 5.133 6 C -0.041 4.041 7 C -0.032 4.032 8 C -0.299 4.299 9 C 0.383 3.617 10 O -0.407 6.407 11 N -0.344 5.344 12 C -0.056 4.056 13 C -0.030 4.030 14 O -0.278 6.278 15 C 0.019 3.981 16 H 0.073 0.927 17 C 0.072 3.928 18 H 0.078 0.922 19 C -0.219 4.219 20 N -0.360 5.360 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.033 4.033 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.210 0.790 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.224 0.776 45 H 0.064 0.936 46 H 0.115 0.885 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.855 9.801 -4.048 25.196 hybrid contribution 1.052 -0.269 0.557 1.220 sum -21.804 9.532 -3.491 24.051 Atomic orbital electron populations 1.23021 0.77562 1.03814 1.01956 1.86455 1.21989 1.20673 1.88459 1.20347 0.89931 0.85248 0.93802 1.77273 1.13213 0.94547 1.34126 1.47677 1.03086 1.06474 1.56015 1.22015 1.04558 0.73459 1.04018 1.23153 0.91232 0.91984 0.96849 1.19623 0.91761 0.92865 1.25609 1.17101 0.80249 0.85297 0.79010 1.90791 1.78233 1.28635 1.43079 1.48044 1.16617 1.25855 1.43930 1.22613 1.02250 0.89048 0.91651 1.22863 0.89658 0.95318 0.95123 1.88093 1.32818 1.34392 1.72493 1.22912 0.98867 0.86459 0.89911 0.92717 1.20265 0.86502 0.93361 0.92707 0.92203 1.22323 1.00048 1.01136 0.98413 1.42400 1.25618 1.06228 1.61744 1.19205 1.01271 0.91125 1.25212 0.91262 1.24695 0.99221 0.95480 1.01419 1.69653 1.35857 1.05073 1.47450 0.86306 0.82204 0.78511 0.79391 1.21395 1.21843 1.21308 1.22426 0.88427 0.94155 0.98294 0.92490 0.87996 0.92418 0.90190 0.88691 0.88846 0.79031 0.89412 0.90165 0.93357 0.88139 0.92869 0.94887 0.92506 0.77618 0.93615 0.88485 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 101.05 1.08 1.38 16 2 O -0.27 -3.96 10.57 -19.27 -0.20 -4.16 16 3 C 0.31 4.44 7.87 -16.66 -0.13 4.31 16 4 N -0.35 -4.28 11.90 30.79 0.37 -3.92 16 5 N -0.35 -3.18 3.97 -67.60 -0.27 -3.44 16 6 C 0.10 0.39 11.44 59.85 0.68 1.08 16 7 C 0.12 1.16 9.11 -16.57 -0.15 1.01 16 8 C -0.28 -3.96 5.28 -104.95 -0.55 -4.51 16 9 C 0.60 10.16 7.59 -12.60 -0.10 10.07 16 10 O -0.53 -11.19 16.55 5.25 0.09 -11.10 16 11 N -0.61 -9.55 3.02 -173.62 -0.52 -10.07 16 12 C 0.07 0.80 5.52 -3.54 -0.02 0.78 16 13 C 0.05 0.61 6.98 37.31 0.26 0.87 16 14 O -0.36 -6.13 9.24 -35.23 -0.33 -6.45 16 15 C 0.08 1.37 2.57 -26.58 -0.07 1.30 16 16 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 17 C 0.18 3.69 2.80 -67.93 -0.19 3.50 16 18 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 19 C -0.16 -3.01 9.30 37.16 0.35 -2.66 16 20 N -0.72 -17.77 4.24 -53.42 -0.23 -18.00 16 21 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.90 22.52 29.55 -169.99 -5.02 17.50 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 C 0.09 1.62 5.84 -3.54 -0.02 1.60 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.19 1.22 7.20 -52.49 -0.38 0.85 16 37 H 0.09 0.81 4.96 -51.93 -0.26 0.55 16 38 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.12 7.57 -51.93 -0.39 0.72 16 44 H 0.39 10.32 7.08 -40.82 -0.29 10.03 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.10 1.90 7.06 -51.93 -0.37 1.54 16 47 H 0.10 2.07 6.94 -51.93 -0.36 1.71 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -36.87 386.60 -5.76 -42.63 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.08 Total: 6.77 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 0.89 Total: 11.61 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.07 Total: -62.62 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.44 Total: -21.72 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.87 -5.76 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330403690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.273 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds