Wall clock time and date at job start Tue Mar 31 2020 22:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 C 1.53002 * 109.46784 * 119.99668 * 2 1 3 5 5 C 1.53004 * 109.46810 * 184.99991 * 4 2 1 6 6 C 1.53002 * 109.46810 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46891 * 180.02562 * 6 5 4 8 8 C 1.36936 * 119.99978 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99840 * 359.97438 * 8 7 6 10 10 C 1.38811 * 120.00026 * 180.02562 * 8 7 6 11 11 N 1.31616 * 120.00199 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99942 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47213 * 0.02562 * 12 10 8 14 14 H 1.48511 * 109.47042 * 119.99889 * 12 10 8 15 15 H 1.48500 * 109.47361 * 239.99796 * 12 10 8 16 16 N 1.46499 * 109.47331 * 239.99690 * 2 1 3 17 17 C 1.34775 * 119.99593 * 85.00273 * 16 2 1 18 18 O 1.21647 * 120.00199 * 354.94353 * 17 16 2 19 19 C 1.47073 * 119.99788 * 174.94669 * 17 16 2 20 20 C 1.38125 * 120.95419 * 185.69626 * 19 17 16 21 21 N 1.35838 * 119.31855 * 179.79935 * 20 19 17 22 22 C 1.46499 * 119.25328 * 180.23380 * 21 20 19 23 23 C 1.34232 * 121.50086 * 0.48829 * 21 20 19 24 24 O 1.21553 * 118.93974 * 179.76378 * 23 21 20 25 25 N 1.34400 * 122.12381 * 359.74123 * 23 21 20 26 26 C 1.46500 * 119.78289 * 180.02562 * 25 23 21 27 27 C 1.34977 * 120.44150 * 0.02562 * 25 23 21 28 28 O 1.21676 * 120.73951 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47155 * 300.00545 * 1 2 3 31 31 H 1.09005 * 109.46662 * 60.00168 * 1 2 3 32 32 H 1.08996 * 109.47682 * 304.99951 * 4 2 1 33 33 H 1.09002 * 109.46824 * 65.00291 * 4 2 1 34 34 H 1.09000 * 109.47448 * 300.00378 * 5 4 2 35 35 H 1.09002 * 109.47183 * 60.00519 * 5 4 2 36 36 H 1.08996 * 109.47682 * 299.99960 * 6 5 4 37 37 H 1.09002 * 109.46824 * 60.00300 * 6 5 4 38 38 H 0.97003 * 120.00076 * 359.97438 * 7 6 5 39 39 H 0.96994 * 120.00325 * 180.02562 * 11 10 8 40 40 H 0.96996 * 120.00074 * 265.00349 * 16 2 1 41 41 H 1.07992 * 120.34113 * 0.02562 * 20 19 17 42 42 H 1.09003 * 109.46662 * 270.25470 * 22 21 20 43 43 H 1.09005 * 109.46753 * 30.24867 * 22 21 20 44 44 H 1.08992 * 109.47359 * 150.25220 * 22 21 20 45 45 H 1.09003 * 109.47614 * 180.02562 * 26 25 23 46 46 H 1.09004 * 109.46860 * 300.02224 * 26 25 23 47 47 H 1.09002 * 109.47327 * 60.01743 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3339 2.5634 7 7 5.5347 -1.2300 2.6255 8 6 6.2184 -1.8041 3.6638 9 1 5.6813 -2.3330 4.4371 10 6 7.6018 -1.7052 3.7229 11 7 8.2563 -1.0601 2.7807 12 14 8.5344 -2.4877 5.1396 13 1 7.5741 -3.1493 6.0590 14 1 9.4860 -3.4967 4.6086 15 1 9.2848 -1.4397 5.8772 16 7 2.0184 -0.6907 -1.1961 17 6 2.1472 -0.0183 -2.3570 18 8 1.7720 1.1362 -2.4362 19 6 2.7412 -0.6804 -3.5283 20 6 2.9899 0.0220 -4.6913 21 7 3.5434 -0.6218 -5.7517 22 6 3.8113 0.1258 -6.9828 23 6 3.8458 -1.9285 -5.6990 24 8 4.3357 -2.4588 -6.6769 25 7 3.6247 -2.6695 -4.5997 26 6 3.9750 -4.0920 -4.5983 27 6 3.0820 -2.1118 -3.4968 28 8 2.8799 -2.7774 -2.4985 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4261 35 1 3.8532 0.4370 1.3575 36 1 3.6401 -0.8740 3.4509 37 1 3.7863 -2.3842 2.5202 38 1 6.0171 -0.7552 1.9307 39 1 9.2229 -0.9913 2.8217 40 1 2.2491 -1.6318 -1.1525 41 1 2.7502 1.0730 -4.7557 42 1 2.9378 0.0798 -7.6331 43 1 4.0268 1.1656 -6.7368 44 1 4.6686 -0.3118 -7.4943 45 1 3.7261 -4.5267 -3.6302 46 1 3.4160 -4.6046 -5.3813 47 1 5.0436 -4.2032 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330934248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:46 Heat of formation + Delta-G solvation = -62.703281 kcal Electronic energy + Delta-G solvation = -29664.438153 eV Core-core repulsion = 25462.528011 eV Total energy + Delta-G solvation = -4201.910142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.76299 -40.08036 -39.20883 -37.77697 -36.62268 -35.77622 -34.72210 -32.65284 -32.15835 -30.81327 -29.29344 -28.78740 -27.48306 -25.63549 -24.90368 -23.97545 -22.96562 -21.56827 -20.73289 -20.58210 -19.66079 -18.47737 -17.78516 -17.68688 -16.95640 -16.42645 -16.11775 -16.07023 -15.39366 -15.34837 -14.93983 -14.61562 -14.46326 -14.31383 -14.03069 -13.83376 -13.62302 -13.40733 -13.31740 -13.12608 -12.91090 -12.73047 -12.60920 -12.08626 -11.98863 -11.90766 -11.42317 -11.22747 -11.08615 -10.82350 -10.72689 -10.67427 -10.37150 -10.29747 -10.24407 -10.04885 -9.91806 -9.62728 -9.17937 -8.85728 -8.80096 -6.84469 -5.70466 -2.98477 0.25761 1.31612 1.35842 2.36051 2.55425 3.18148 3.31804 3.46910 3.52130 3.54735 3.70564 4.15466 4.38394 4.57741 4.63113 4.64405 4.83326 4.90320 4.98298 5.00130 5.01166 5.05758 5.17651 5.29503 5.37283 5.46653 5.54072 5.64173 5.68990 5.71369 5.75049 5.90648 6.07549 6.17840 6.24848 6.33377 6.45715 6.52015 6.62237 6.64171 6.94500 6.97397 7.01017 7.33630 7.68694 7.76034 8.27643 8.48825 9.59508 10.19633 10.54141 11.52808 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.002805 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.415593 B = 9981.193183 C =11577.880818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.235 4.235 9 H 0.070 0.930 10 C -0.017 4.017 11 N -0.935 5.935 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 N -0.706 5.706 17 C 0.591 3.409 18 O -0.555 6.555 19 C -0.315 4.315 20 C 0.245 3.755 21 N -0.528 5.528 22 C 0.072 3.928 23 C 0.693 3.307 24 O -0.530 6.530 25 N -0.551 5.551 26 C 0.077 3.923 27 C 0.561 3.439 28 O -0.496 6.496 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.253 0.747 40 H 0.414 0.586 41 H 0.197 0.803 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.080 0.920 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.738 1.931 -22.217 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.367 4.367 9 H 0.088 0.912 10 C -0.213 4.213 11 N -0.584 5.584 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.364 5.364 17 C 0.378 3.622 18 O -0.435 6.435 19 C -0.328 4.328 20 C 0.116 3.884 21 N -0.245 5.245 22 C -0.068 4.068 23 C 0.396 3.604 24 O -0.402 6.402 25 N -0.294 5.294 26 C -0.063 4.063 27 C 0.355 3.645 28 O -0.369 6.369 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.216 0.784 39 H 0.063 0.937 40 H 0.258 0.742 41 H 0.214 0.786 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.099 0.901 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.709 1.829 -22.204 27.261 hybrid contribution 0.945 -0.702 0.531 1.291 sum -14.764 1.127 -21.674 26.249 Atomic orbital electron populations 1.22167 0.95472 1.02001 1.02332 1.21060 0.93698 0.97566 0.83992 0.89424 1.21842 0.96864 1.00935 0.96467 1.21725 0.93762 1.01261 0.99582 1.20651 0.86072 0.96532 0.94197 1.42397 1.00294 1.66199 1.28963 1.19304 0.89467 1.26764 1.01148 0.91165 1.24746 0.96448 1.01390 0.98699 1.69675 1.07030 1.47239 1.34444 0.86112 0.79894 0.78480 0.81714 1.20568 1.21924 1.21905 1.46421 1.65500 1.15823 1.08688 1.16911 0.77948 0.85334 0.82042 1.90787 1.51467 1.17019 1.84266 1.21612 1.19908 0.93295 0.98010 1.22925 0.82801 0.99107 0.83572 1.44524 1.55498 1.08710 1.15723 1.22292 1.04541 0.96523 0.83479 1.15732 0.79848 0.81051 0.83801 1.91029 1.46248 1.69339 1.33627 1.46179 1.57256 1.13344 1.12655 1.22027 1.02699 0.76110 1.05482 1.18430 0.76237 0.87533 0.82289 1.90670 1.52093 1.63681 1.30475 0.92582 0.91614 0.92213 0.90271 0.91374 0.91997 0.92037 0.96490 0.96515 0.78382 0.93664 0.74173 0.78631 0.89924 0.88453 0.88079 0.87453 0.90135 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.14 1.81 2.54 -67.93 -0.17 1.64 16 3 H 0.09 1.22 7.65 -51.93 -0.40 0.82 16 4 C -0.12 -1.64 4.75 -26.73 -0.13 -1.77 16 5 C -0.13 -2.17 5.22 -26.73 -0.14 -2.31 16 6 C 0.15 3.26 6.26 -4.04 -0.03 3.23 16 7 N -0.73 -19.74 5.60 -59.91 -0.34 -20.08 16 8 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 9 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 10 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 11 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 12 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 N -0.71 -9.52 4.47 -54.99 -0.25 -9.77 16 17 C 0.59 7.86 7.71 -12.68 -0.10 7.77 16 18 O -0.55 -8.21 16.08 5.24 0.08 -8.12 16 19 C -0.32 -3.44 6.05 -102.73 -0.62 -4.06 16 20 C 0.24 1.78 9.96 -15.82 -0.16 1.62 16 21 N -0.53 -3.66 2.97 -128.52 -0.38 -4.05 16 22 C 0.07 0.23 10.31 59.85 0.62 0.85 16 23 C 0.69 6.85 8.09 -87.74 -0.71 6.14 16 24 O -0.53 -6.15 15.61 5.32 0.08 -6.07 16 25 N -0.55 -5.79 2.96 -129.64 -0.38 -6.18 16 26 C 0.08 0.68 9.96 59.85 0.60 1.27 16 27 C 0.56 6.71 7.63 -12.54 -0.10 6.61 16 28 O -0.50 -6.95 13.38 5.21 0.07 -6.88 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.13 7.75 -51.93 -0.40 0.73 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.81 7.67 -40.82 -0.31 10.50 16 39 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.41 5.83 5.37 -40.82 -0.22 5.61 16 41 H 0.20 0.88 7.69 -52.49 -0.40 0.48 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.10 0.05 8.01 -51.93 -0.42 -0.36 16 44 H 0.10 0.41 7.31 -51.93 -0.38 0.03 16 45 H 0.11 0.96 6.92 -51.93 -0.36 0.60 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -37.28 392.49 -7.41 -44.68 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.08 Total: 9.08 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -0.83 Total: 11.93 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -0.62 Total: -68.56 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.24 Total: -21.07 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.28 -7.41 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330934248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.019 kcal (2) G-P(sol) polarization free energy of solvation -37.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds