Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47028 * 2 1 4 4 C 1.53002 * 109.46784 * 119.99668 * 2 1 3 5 5 C 1.53004 * 109.46810 * 184.99991 * 4 2 1 6 6 C 1.53002 * 109.46810 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.46891 * 180.02562 * 6 5 4 8 8 C 1.36936 * 119.99978 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99840 * 359.97438 * 8 7 6 10 10 C 1.38811 * 120.00026 * 180.02562 * 8 7 6 11 11 N 1.31616 * 120.00199 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99942 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47213 * 0.02562 * 12 10 8 14 14 H 1.48511 * 109.47042 * 119.99889 * 12 10 8 15 15 H 1.48500 * 109.47361 * 239.99796 * 12 10 8 16 16 N 1.46499 * 109.47331 * 239.99690 * 2 1 3 17 17 C 1.34775 * 119.99593 * 85.00273 * 16 2 1 18 18 O 1.21647 * 120.00199 * 354.94353 * 17 16 2 19 19 C 1.47073 * 119.99788 * 174.94669 * 17 16 2 20 20 C 1.38125 * 120.95419 * 185.69626 * 19 17 16 21 21 N 1.35838 * 119.31855 * 179.79935 * 20 19 17 22 22 C 1.46499 * 119.25328 * 180.23380 * 21 20 19 23 23 C 1.34232 * 121.50086 * 0.48829 * 21 20 19 24 24 O 1.21553 * 118.93974 * 179.76378 * 23 21 20 25 25 N 1.34400 * 122.12381 * 359.74123 * 23 21 20 26 26 C 1.46500 * 119.78289 * 180.02562 * 25 23 21 27 27 C 1.34977 * 120.44150 * 0.02562 * 25 23 21 28 28 O 1.21676 * 120.73951 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47155 * 300.00545 * 1 2 3 31 31 H 1.09005 * 109.46662 * 60.00168 * 1 2 3 32 32 H 1.08996 * 109.47682 * 304.99951 * 4 2 1 33 33 H 1.09002 * 109.46824 * 65.00291 * 4 2 1 34 34 H 1.09000 * 109.47448 * 300.00378 * 5 4 2 35 35 H 1.09002 * 109.47183 * 60.00519 * 5 4 2 36 36 H 1.08996 * 109.47682 * 299.99960 * 6 5 4 37 37 H 1.09002 * 109.46824 * 60.00300 * 6 5 4 38 38 H 0.97003 * 120.00076 * 359.97438 * 7 6 5 39 39 H 0.96994 * 120.00325 * 180.02562 * 11 10 8 40 40 H 0.96996 * 120.00074 * 265.00349 * 16 2 1 41 41 H 1.07992 * 120.34113 * 0.02562 * 20 19 17 42 42 H 1.09003 * 109.46662 * 270.25470 * 22 21 20 43 43 H 1.09005 * 109.46753 * 30.24867 * 22 21 20 44 44 H 1.08992 * 109.47359 * 150.25220 * 22 21 20 45 45 H 1.09003 * 109.47614 * 180.02562 * 26 25 23 46 46 H 1.09004 * 109.46860 * 300.02224 * 26 25 23 47 47 H 1.09002 * 109.47327 * 60.01743 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0747 -1.3339 2.5634 7 7 5.5347 -1.2300 2.6255 8 6 6.2184 -1.8041 3.6638 9 1 5.6813 -2.3330 4.4371 10 6 7.6018 -1.7052 3.7229 11 7 8.2563 -1.0601 2.7807 12 14 8.5344 -2.4877 5.1396 13 1 7.5741 -3.1493 6.0590 14 1 9.4860 -3.4967 4.6086 15 1 9.2848 -1.4397 5.8772 16 7 2.0184 -0.6907 -1.1961 17 6 2.1472 -0.0183 -2.3570 18 8 1.7720 1.1362 -2.4362 19 6 2.7412 -0.6804 -3.5283 20 6 2.9899 0.0220 -4.6913 21 7 3.5434 -0.6218 -5.7517 22 6 3.8113 0.1258 -6.9828 23 6 3.8458 -1.9285 -5.6990 24 8 4.3357 -2.4588 -6.6769 25 7 3.6247 -2.6695 -4.5997 26 6 3.9750 -4.0920 -4.5983 27 6 3.0820 -2.1118 -3.4968 28 8 2.8799 -2.7774 -2.4985 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4261 35 1 3.8532 0.4370 1.3575 36 1 3.6401 -0.8740 3.4509 37 1 3.7863 -2.3842 2.5202 38 1 6.0171 -0.7552 1.9307 39 1 9.2229 -0.9913 2.8217 40 1 2.2491 -1.6318 -1.1525 41 1 2.7502 1.0730 -4.7557 42 1 2.9378 0.0798 -7.6331 43 1 4.0268 1.1656 -6.7368 44 1 4.6686 -0.3118 -7.4943 45 1 3.7261 -4.5267 -3.6302 46 1 3.4160 -4.6046 -5.3813 47 1 5.0436 -4.2032 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330934248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = -89.060759 kcal Electronic energy + Delta-G solvation = -29665.581099 eV Core-core repulsion = 25462.528011 eV Total energy + Delta-G solvation = -4203.053088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53134 -41.00968 -40.10188 -38.56774 -37.84090 -36.68040 -36.40289 -34.14246 -33.22245 -32.16533 -30.74513 -29.47534 -28.03032 -27.23260 -25.79257 -24.75990 -24.71224 -22.68890 -22.22523 -21.59365 -20.45485 -19.29973 -19.10824 -18.60532 -18.44040 -17.39173 -17.02973 -16.82825 -16.62676 -16.12682 -16.08486 -15.91903 -15.75970 -15.38917 -15.31989 -15.14194 -14.81991 -14.66418 -14.36234 -13.96303 -13.81247 -13.48053 -13.43511 -13.35878 -13.16655 -12.97879 -12.80720 -12.46579 -12.38225 -12.22979 -12.20084 -12.05403 -11.87634 -11.72476 -11.64557 -11.42941 -11.07167 -11.05250 -10.95496 -10.08946 -9.71375 -9.02081 -7.96670 -5.26307 -0.45515 0.51463 0.65462 1.45803 1.47479 1.57820 1.60081 1.69049 2.28827 2.43419 2.54900 2.98493 3.36783 3.56413 3.65793 3.78335 3.97368 4.01660 4.12432 4.15557 4.24577 4.30882 4.32582 4.36222 4.43654 4.46553 4.60435 4.68324 4.71607 4.80938 4.83792 4.87119 4.87614 4.95685 5.00640 5.03819 5.14184 5.35069 5.39068 5.42279 5.49217 5.65785 5.86143 6.12766 6.25765 6.51505 6.68846 7.27278 7.30962 8.07348 8.30716 9.27494 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.002805 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.415593 B = 9981.193183 C =11577.880818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.151 3.849 7 N -0.750 5.750 8 C -0.247 4.247 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.978 3.022 13 H -0.265 1.265 14 H -0.292 1.292 15 H -0.291 1.291 16 N -0.714 5.714 17 C 0.589 3.411 18 O -0.576 6.576 19 C -0.354 4.354 20 C 0.287 3.713 21 N -0.518 5.518 22 C 0.062 3.938 23 C 0.688 3.312 24 O -0.548 6.548 25 N -0.555 5.555 26 C 0.074 3.926 27 C 0.556 3.444 28 O -0.528 6.528 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.018 0.982 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.411 0.589 41 H 0.233 0.767 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.725 2.542 -22.748 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.149 4.149 6 C 0.025 3.975 7 N -0.393 5.393 8 C -0.378 4.378 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.806 3.194 13 H -0.189 1.189 14 H -0.219 1.219 15 H -0.218 1.218 16 N -0.371 5.371 17 C 0.377 3.623 18 O -0.459 6.459 19 C -0.366 4.366 20 C 0.156 3.844 21 N -0.232 5.232 22 C -0.076 4.076 23 C 0.391 3.609 24 O -0.422 6.422 25 N -0.297 5.297 26 C -0.066 4.066 27 C 0.352 3.648 28 O -0.404 6.404 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.203 0.797 39 H 0.060 0.940 40 H 0.254 0.746 41 H 0.249 0.751 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.732 2.433 -22.762 28.354 hybrid contribution 1.243 -0.870 0.561 1.618 sum -15.488 1.563 -22.201 27.114 Atomic orbital electron populations 1.22087 0.93675 1.02540 1.02796 1.21045 0.95035 0.96632 0.83557 0.90652 1.21763 0.93709 1.01752 0.97722 1.21564 0.96478 0.99915 0.96930 1.20842 0.83279 0.97116 0.96301 1.42660 1.02495 1.65940 1.28184 1.19721 0.90105 1.26358 1.01659 0.90546 1.25645 0.97461 1.02452 1.01564 1.69838 1.07041 1.48880 1.36497 0.85013 0.78395 0.77376 0.78612 1.18906 1.21925 1.21784 1.46528 1.65720 1.15720 1.09137 1.17168 0.77513 0.85136 0.82459 1.90758 1.52651 1.17712 1.84730 1.21359 1.23270 0.93075 0.98923 1.23358 0.79197 0.99865 0.81951 1.44814 1.53803 1.07865 1.16720 1.22706 1.05169 0.97665 0.82078 1.15931 0.79735 0.81961 0.83277 1.91020 1.47093 1.69977 1.34080 1.46284 1.56833 1.14001 1.12600 1.22117 1.03094 0.75722 1.05710 1.18642 0.75965 0.88003 0.82141 1.90637 1.53785 1.64454 1.31550 0.91978 0.89874 0.92982 0.88417 0.90717 0.93498 0.92751 0.95686 0.96360 0.79737 0.93980 0.74573 0.75078 0.87973 0.84997 0.88927 0.88046 0.88673 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.48 71.98 0.68 -2.44 16 2 C 0.14 3.55 2.54 44.99 0.11 3.67 16 3 H 0.08 2.08 7.65 -2.39 -0.02 2.06 16 4 C -0.11 -2.87 4.75 30.60 0.15 -2.72 16 5 C -0.11 -3.85 5.22 30.60 0.16 -3.69 16 6 C 0.15 6.40 6.26 86.38 0.54 6.95 16 7 N -0.75 -40.87 5.60 -343.45 -1.92 -42.80 16 8 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 9 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 10 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 11 N -0.97 -61.65 13.06 21.65 0.28 -61.36 16 12 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 13 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 16 N -0.71 -19.42 4.47 -446.13 -2.00 -21.41 16 17 C 0.59 15.59 7.71 86.56 0.67 16.26 16 18 O -0.58 -16.65 16.08 -4.18 -0.07 -16.72 16 19 C -0.35 -7.54 6.05 -18.64 -0.11 -7.65 16 20 C 0.29 3.53 9.96 84.05 0.84 4.37 16 21 N -0.52 -6.04 2.97 -679.10 -2.02 -8.06 16 22 C 0.06 0.20 10.31 127.77 1.32 1.52 16 23 C 0.69 12.95 8.09 179.34 1.45 14.40 16 24 O -0.55 -12.25 15.61 -3.88 -0.06 -12.31 16 25 N -0.55 -11.70 2.96 -800.67 -2.37 -14.06 16 26 C 0.07 1.33 9.96 127.77 1.27 2.60 16 27 C 0.56 13.59 7.63 86.56 0.66 14.26 16 28 O -0.53 -15.50 13.38 -4.27 -0.06 -15.56 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.16 8.09 -2.38 -0.02 1.14 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.37 21.55 7.67 -92.71 -0.71 20.84 16 39 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.41 11.89 5.37 -92.71 -0.50 11.39 16 41 H 0.23 1.20 7.69 -2.91 -0.02 1.17 16 42 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.13 -0.44 8.01 -2.38 -0.02 -0.45 16 44 H 0.09 0.55 7.31 -2.39 -0.02 0.53 16 45 H 0.10 1.93 6.92 -2.39 -0.02 1.92 16 46 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -81.63 392.49 2.65 -78.98 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.21 Total: 34.21 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 9.04 Total: 29.60 kcal Atomic # 7 Polarization: -139.67 SS G_CDS: -8.03 Total: -147.70 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.18 Total: -44.59 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -81.63 2.65 -78.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330934248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.084 kcal (2) G-P(sol) polarization free energy of solvation -81.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds