Wall clock time and date at job start Tue Mar 31 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.34778 * 119.99951 * 274.99836 * 4 2 1 6 6 O 1.21349 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00249 * 179.97438 * 5 4 2 8 8 O 1.21349 * 119.99868 * 0.02562 * 7 5 4 9 9 N 1.34778 * 120.00249 * 180.02562 * 7 5 4 10 10 C 1.46496 * 119.99951 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47206 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00270 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00352 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99876 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47392 * 89.99944 * 16 14 12 18 18 H 1.48506 * 109.46925 * 209.99761 * 16 14 12 19 19 H 1.48498 * 109.46986 * 329.99439 * 16 14 12 20 20 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 21 21 N 1.31128 * 126.55294 * 104.70919 * 20 2 1 22 22 C 1.34496 * 105.61150 * 179.91440 * 21 20 2 23 23 C 1.50701 * 126.28604 * 180.12672 * 22 21 20 24 24 C 1.53000 * 109.47206 * 180.24311 * 23 22 21 25 25 C 1.53004 * 109.47079 * 300.24875 * 23 22 21 26 26 C 1.52998 * 109.46940 * 60.24014 * 23 22 21 27 27 N 1.29941 * 107.42777 * 0.35635 * 22 21 20 28 28 O 1.21302 * 110.25244 * 359.77196 * 27 22 21 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 32 32 H 0.96995 * 120.00444 * 95.00053 * 4 2 1 33 33 H 0.97001 * 119.99515 * 359.97438 * 9 7 5 34 34 H 1.09005 * 109.47129 * 299.99778 * 10 9 7 35 35 H 1.09000 * 109.47426 * 60.00454 * 10 9 7 36 36 H 1.09005 * 109.46885 * 299.99737 * 11 10 9 37 37 H 1.08997 * 109.47739 * 59.99761 * 11 10 9 38 38 H 0.96993 * 120.00431 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.46909 * 60.00622 * 24 23 22 40 40 H 1.09004 * 109.46914 * 180.02562 * 24 23 22 41 41 H 1.08992 * 109.46712 * 300.00034 * 24 23 22 42 42 H 1.08997 * 109.47390 * 59.99802 * 25 23 22 43 43 H 1.08999 * 109.47014 * 180.02562 * 25 23 22 44 44 H 1.09007 * 109.46966 * 299.99522 * 25 23 22 45 45 H 1.09004 * 109.46843 * 60.00438 * 26 23 22 46 46 H 1.09004 * 109.47208 * 180.02562 * 26 23 22 47 47 H 1.08997 * 109.47620 * 300.00254 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8580 1.1591 2.4117 7 6 2.6447 -0.7228 3.5775 8 8 2.9333 -1.9002 3.5231 9 7 2.7730 -0.0506 4.7386 10 6 3.2613 -0.7412 5.9347 11 6 3.3116 0.2417 7.1062 12 6 3.8145 -0.4685 8.3366 13 1 4.0721 -1.5163 8.2879 14 6 3.9458 0.2192 9.5243 15 7 4.3843 -0.4007 10.5982 16 14 3.4996 2.0311 9.6087 17 1 2.0669 2.1717 9.9730 18 1 4.3392 2.7004 10.6346 19 1 3.7382 2.6618 8.2856 20 6 2.0323 -0.7104 -1.2305 21 7 2.5448 -0.1516 -2.3004 22 6 2.8502 -1.1669 -3.1280 23 6 3.4710 -1.0466 -4.4959 24 6 3.6456 -2.4409 -5.1012 25 6 2.5610 -0.2095 -5.3971 26 6 4.8367 -0.3670 -4.3781 27 7 2.5071 -2.2702 -2.5335 28 8 2.0352 -2.0300 -1.4422 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 1.1526 33 1 2.5426 0.8907 4.7820 34 1 2.5889 -1.5635 6.1795 35 1 4.2607 -1.1329 5.7456 36 1 3.9837 1.0643 6.8618 37 1 2.3121 0.6332 7.2954 38 1 4.4763 0.0830 11.4338 39 1 2.6726 -2.9249 -5.1852 40 1 4.0951 -2.3538 -6.0904 41 1 4.2939 -3.0370 -4.4591 42 1 2.4367 0.7838 -4.9659 43 1 3.0099 -0.1229 -6.3866 44 1 1.5880 -0.6936 -5.4811 45 1 5.4851 -0.9633 -3.7360 46 1 5.2856 -0.2796 -5.3675 47 1 4.7124 0.6263 -3.9469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346988430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:44 Heat of formation + Delta-G solvation = -17.677245 kcal Electronic energy + Delta-G solvation = -28576.476140 eV Core-core repulsion = 24376.518474 eV Total energy + Delta-G solvation = -4199.957666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.07924 -40.75508 -38.69830 -38.20798 -36.70695 -35.40471 -35.00866 -32.88492 -32.47245 -30.80854 -30.31608 -27.89145 -27.82447 -26.31690 -25.21065 -25.03784 -23.65553 -22.24727 -20.94829 -20.49981 -20.04675 -18.72943 -18.53939 -17.70008 -17.12596 -16.72907 -16.15042 -15.92842 -15.60611 -15.42553 -14.78146 -14.71231 -14.64441 -14.39591 -14.20283 -13.81704 -13.67107 -13.09731 -13.05819 -13.01465 -12.79544 -12.71621 -12.63917 -12.22519 -12.18955 -12.06509 -11.98975 -11.72935 -11.71169 -11.54594 -11.46099 -11.28076 -11.25342 -10.47861 -10.43918 -10.35100 -9.98763 -9.82724 -9.58277 -9.36367 -8.84396 -8.63708 -6.14274 -4.15309 0.60882 1.35477 1.71198 2.14019 2.22011 3.04994 3.20432 3.24864 3.33136 3.34373 3.46054 3.64068 4.12131 4.33158 4.35757 4.38568 4.42528 4.50929 4.60365 4.68583 5.05116 5.08142 5.09999 5.12399 5.18722 5.24059 5.24348 5.31855 5.33258 5.36263 5.50500 5.62947 5.64822 5.72564 5.72959 5.78063 5.91710 6.06222 6.41006 6.44938 6.69342 7.01487 7.14995 7.36556 7.59222 7.67194 7.70940 8.10472 8.39292 8.88855 9.45446 10.98417 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.001801 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.094266 B =15547.380590 C =15740.112302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.243 3.757 3 H 0.138 0.862 4 N -0.707 5.707 5 C 0.518 3.482 6 O -0.511 6.511 7 C 0.500 3.500 8 O -0.524 6.524 9 N -0.688 5.688 10 C 0.127 3.873 11 C -0.024 4.024 12 C -0.525 4.525 13 H 0.077 0.923 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.170 3.830 21 N -0.461 5.461 22 C 0.182 3.818 23 C 0.023 3.977 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.140 4.140 27 N -0.373 5.373 28 O 0.084 5.916 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.419 0.581 33 H 0.410 0.590 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 1.160 -33.124 33.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.137 3.863 3 H 0.155 0.845 4 N -0.363 5.363 5 C 0.300 3.700 6 O -0.385 6.385 7 C 0.279 3.721 8 O -0.401 6.401 9 N -0.339 5.339 10 C 0.005 3.995 11 C -0.062 4.062 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.132 4.132 15 N -0.535 5.535 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.190 1.190 20 C -0.052 4.052 21 N -0.194 5.194 22 C -0.091 4.091 23 C 0.021 3.979 24 C -0.198 4.198 25 C -0.196 4.196 26 C -0.198 4.198 27 N -0.078 5.078 28 O 0.025 5.975 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.257 0.743 33 H 0.245 0.755 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.755 0.725 -33.507 34.005 hybrid contribution -0.262 0.893 0.401 1.013 sum -6.017 1.618 -33.106 33.687 Atomic orbital electron populations 1.22278 0.91331 1.04149 1.04678 1.19381 0.95531 0.96000 0.75407 0.84479 1.45742 1.66948 1.15463 1.08171 1.20493 0.78159 0.86887 0.84499 1.90779 1.47785 1.15195 1.84720 1.19761 0.80690 0.87166 0.84451 1.90776 1.49378 1.15138 1.84797 1.46208 1.63295 1.15025 1.09410 1.21750 0.99294 0.96409 0.82022 1.19829 0.97396 0.95469 0.93458 1.20868 1.44752 0.98601 0.92116 0.90528 1.24986 0.94382 0.98329 0.95478 1.69895 1.46023 1.36789 1.00759 0.86767 0.78723 0.85470 0.78246 1.20146 1.21227 1.18954 1.28726 0.96742 0.81719 0.97991 1.71813 1.15527 1.30632 1.01454 1.25851 1.00125 0.83293 0.99846 1.19048 0.95635 0.98128 0.85062 1.21849 1.02849 0.94076 1.01051 1.21868 0.98756 1.00048 0.98959 1.21877 0.93928 1.01155 1.02800 1.74666 1.15211 1.23740 0.94186 1.85320 1.58240 1.26521 1.27439 0.90260 0.90948 0.89298 0.74318 0.75482 0.91107 0.91137 0.95693 0.96098 0.92482 0.91937 0.91072 0.91857 0.91290 0.91008 0.92447 0.92330 0.90985 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.47 37.16 0.35 -0.73 16 2 C 0.24 2.02 3.12 -69.08 -0.22 1.80 16 3 H 0.14 1.17 7.58 -51.93 -0.39 0.78 16 4 N -0.71 -6.98 5.06 -55.36 -0.28 -7.26 16 5 C 0.52 6.51 7.85 -11.58 -0.09 6.42 16 6 O -0.51 -7.04 16.14 5.50 0.09 -6.95 16 7 C 0.50 7.62 7.89 -11.58 -0.09 7.53 16 8 O -0.52 -9.11 16.48 5.50 0.09 -9.02 16 9 N -0.69 -11.04 5.55 -60.73 -0.34 -11.38 16 10 C 0.13 2.43 5.61 -4.04 -0.02 2.41 16 11 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 12 C -0.53 -14.31 9.66 -34.44 -0.33 -14.65 16 13 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 16 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 20 C 0.17 1.59 7.26 -13.05 -0.09 1.49 16 21 N -0.46 -4.69 11.55 -9.87 -0.11 -4.80 16 22 C 0.18 1.80 6.40 -156.37 -1.00 0.79 16 23 C 0.02 0.17 0.99 -155.66 -0.15 0.01 16 24 C -0.14 -0.89 7.97 37.16 0.30 -0.59 16 25 C -0.14 -0.81 8.46 37.16 0.31 -0.49 16 26 C -0.14 -0.90 8.46 37.16 0.31 -0.58 16 27 N -0.37 -4.04 11.47 30.90 0.35 -3.69 16 28 O 0.08 0.85 11.13 18.09 0.20 1.05 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.42 3.97 7.92 -40.82 -0.32 3.65 16 33 H 0.41 5.99 7.94 -40.82 -0.32 5.67 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -31.99 400.83 -6.10 -38.09 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.31 Total: 3.21 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.94 Total: 4.66 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.40 Total: -53.20 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.38 Total: -14.92 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.99 -6.10 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346988430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.415 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds