Wall clock time and date at job start Tue Mar 31 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.34778 * 119.99951 * 274.99836 * 4 2 1 6 6 O 1.21349 * 119.99882 * 0.02562 * 5 4 2 7 7 C 1.49450 * 120.00249 * 179.97438 * 5 4 2 8 8 O 1.21349 * 119.99868 * 0.02562 * 7 5 4 9 9 N 1.34778 * 120.00249 * 180.02562 * 7 5 4 10 10 C 1.46496 * 119.99951 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47206 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00270 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00352 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99876 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47392 * 89.99944 * 16 14 12 18 18 H 1.48506 * 109.46925 * 209.99761 * 16 14 12 19 19 H 1.48498 * 109.46986 * 329.99439 * 16 14 12 20 20 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 21 21 N 1.31128 * 126.55294 * 104.70919 * 20 2 1 22 22 C 1.34496 * 105.61150 * 179.91440 * 21 20 2 23 23 C 1.50701 * 126.28604 * 180.12672 * 22 21 20 24 24 C 1.53000 * 109.47206 * 180.24311 * 23 22 21 25 25 C 1.53004 * 109.47079 * 300.24875 * 23 22 21 26 26 C 1.52998 * 109.46940 * 60.24014 * 23 22 21 27 27 N 1.29941 * 107.42777 * 0.35635 * 22 21 20 28 28 O 1.21302 * 110.25244 * 359.77196 * 27 22 21 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 32 32 H 0.96995 * 120.00444 * 95.00053 * 4 2 1 33 33 H 0.97001 * 119.99515 * 359.97438 * 9 7 5 34 34 H 1.09005 * 109.47129 * 299.99778 * 10 9 7 35 35 H 1.09000 * 109.47426 * 60.00454 * 10 9 7 36 36 H 1.09005 * 109.46885 * 299.99737 * 11 10 9 37 37 H 1.08997 * 109.47739 * 59.99761 * 11 10 9 38 38 H 0.96993 * 120.00431 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.46909 * 60.00622 * 24 23 22 40 40 H 1.09004 * 109.46914 * 180.02562 * 24 23 22 41 41 H 1.08992 * 109.46712 * 300.00034 * 24 23 22 42 42 H 1.08997 * 109.47390 * 59.99802 * 25 23 22 43 43 H 1.08999 * 109.47014 * 180.02562 * 25 23 22 44 44 H 1.09007 * 109.46966 * 299.99522 * 25 23 22 45 45 H 1.09004 * 109.46843 * 60.00438 * 26 23 22 46 46 H 1.09004 * 109.47208 * 180.02562 * 26 23 22 47 47 H 1.08997 * 109.47620 * 300.00254 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8580 1.1591 2.4117 7 6 2.6447 -0.7228 3.5775 8 8 2.9333 -1.9002 3.5231 9 7 2.7730 -0.0506 4.7386 10 6 3.2613 -0.7412 5.9347 11 6 3.3116 0.2417 7.1062 12 6 3.8145 -0.4685 8.3366 13 1 4.0721 -1.5163 8.2879 14 6 3.9458 0.2192 9.5243 15 7 4.3843 -0.4007 10.5982 16 14 3.4996 2.0311 9.6087 17 1 2.0669 2.1717 9.9730 18 1 4.3392 2.7004 10.6346 19 1 3.7382 2.6618 8.2856 20 6 2.0323 -0.7104 -1.2305 21 7 2.5448 -0.1516 -2.3004 22 6 2.8502 -1.1669 -3.1280 23 6 3.4710 -1.0466 -4.4959 24 6 3.6456 -2.4409 -5.1012 25 6 2.5610 -0.2095 -5.3971 26 6 4.8367 -0.3670 -4.3781 27 7 2.5071 -2.2702 -2.5335 28 8 2.0352 -2.0300 -1.4422 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 1.1526 33 1 2.5426 0.8907 4.7820 34 1 2.5889 -1.5635 6.1795 35 1 4.2607 -1.1329 5.7456 36 1 3.9837 1.0643 6.8618 37 1 2.3121 0.6332 7.2954 38 1 4.4763 0.0830 11.4338 39 1 2.6726 -2.9249 -5.1852 40 1 4.0951 -2.3538 -6.0904 41 1 4.2939 -3.0370 -4.4591 42 1 2.4367 0.7838 -4.9659 43 1 3.0099 -0.1229 -6.3866 44 1 1.5880 -0.6936 -5.4811 45 1 5.4851 -0.9633 -3.7360 46 1 5.2856 -0.2796 -5.3675 47 1 4.7124 0.6263 -3.9469 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346988430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:43 Heat of formation + Delta-G solvation = -42.596999 kcal Electronic energy + Delta-G solvation = -28577.556742 eV Core-core repulsion = 24376.518474 eV Total energy + Delta-G solvation = -4201.038268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.84159 -41.85749 -39.87908 -38.80158 -37.60232 -36.77693 -35.85944 -34.80940 -33.30572 -32.12878 -31.50944 -28.38535 -28.29161 -27.72805 -26.22930 -25.75477 -24.87863 -23.08854 -22.61476 -21.59100 -20.76545 -19.81408 -19.31886 -19.01225 -18.49417 -17.93985 -17.21439 -16.89066 -16.61385 -16.24425 -16.18790 -15.91837 -15.67760 -15.24293 -15.09694 -14.95920 -14.81820 -14.58186 -14.20184 -13.76427 -13.53990 -13.38684 -13.34373 -13.17336 -13.05849 -12.90537 -12.76943 -12.71549 -12.65485 -12.56697 -12.35226 -12.21806 -12.18397 -12.03677 -11.85189 -11.76903 -11.49868 -11.18583 -10.79970 -10.77810 -10.67949 -10.24735 -8.28930 -6.35850 -0.14914 0.23571 0.91844 1.19611 1.41077 1.42777 1.46604 1.53794 2.05196 2.26809 2.37645 2.58938 2.83278 3.06472 3.32320 3.50282 3.76867 3.82818 3.87848 3.98689 4.05504 4.27759 4.40755 4.43018 4.51333 4.59858 4.65317 4.68439 4.70025 4.74271 4.75484 4.86297 4.86980 4.91618 4.97845 4.98868 5.12580 5.16932 5.25192 5.29046 5.30741 5.39158 5.59639 5.73847 6.19768 6.25341 6.56592 6.71910 6.87913 6.95500 7.28837 8.87298 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025081 B = 0.001801 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.094266 B =15547.380590 C =15740.112302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.247 3.753 3 H 0.140 0.860 4 N -0.694 5.694 5 C 0.531 3.469 6 O -0.520 6.520 7 C 0.502 3.498 8 O -0.547 6.547 9 N -0.685 5.685 10 C 0.141 3.859 11 C -0.018 4.018 12 C -0.536 4.536 13 H 0.035 0.965 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.239 1.239 20 C 0.175 3.825 21 N -0.473 5.473 22 C 0.178 3.822 23 C 0.017 3.983 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.136 4.136 27 N -0.392 5.392 28 O 0.078 5.922 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.422 0.578 33 H 0.419 0.581 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.268 0.732 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.095 0.905 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 3.233 -35.588 36.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.141 3.859 3 H 0.158 0.842 4 N -0.350 5.350 5 C 0.312 3.688 6 O -0.395 6.395 7 C 0.282 3.718 8 O -0.425 6.425 9 N -0.337 5.337 10 C 0.019 3.981 11 C -0.055 4.055 12 C -0.575 4.575 13 H 0.053 0.947 14 C -0.191 4.191 15 N -0.588 5.588 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.162 1.162 20 C -0.047 4.047 21 N -0.206 5.206 22 C -0.095 4.095 23 C 0.015 3.985 24 C -0.194 4.194 25 C -0.191 4.191 26 C -0.194 4.194 27 N -0.099 5.099 28 O 0.020 5.980 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.260 0.740 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.710 2.796 -36.016 36.742 hybrid contribution 0.060 0.126 1.113 1.122 sum -6.650 2.922 -34.903 35.651 Atomic orbital electron populations 1.22270 0.89565 1.04796 1.05310 1.19551 0.96712 0.95510 0.74090 0.84234 1.45675 1.65876 1.15528 1.07906 1.19790 0.78389 0.86456 0.84189 1.90788 1.48582 1.15331 1.84773 1.20177 0.79789 0.86858 0.84943 1.90771 1.50184 1.16320 1.85269 1.45949 1.63499 1.15404 1.08815 1.21292 0.98689 0.95606 0.82562 1.19699 0.97950 0.95720 0.92173 1.21213 1.44434 0.97322 0.94508 0.94668 1.26005 0.94268 1.03904 0.94890 1.70059 1.47943 1.39159 1.01653 0.85622 0.78689 0.78759 0.79354 1.19038 1.21348 1.16215 1.28885 0.96186 0.81525 0.98092 1.71827 1.15984 1.30954 1.01871 1.26431 0.99476 0.82882 1.00675 1.19297 0.96112 0.98990 0.84066 1.21829 1.02362 0.93255 1.01952 1.21846 0.98433 0.99161 0.99679 1.21864 0.93383 1.00234 1.03904 1.74663 1.16214 1.24436 0.94619 1.85298 1.58437 1.26813 1.27405 0.88768 0.90345 0.89458 0.73978 0.74321 0.92078 0.92301 0.94546 0.94527 0.92361 0.92643 0.88715 0.93103 0.91987 0.88747 0.92868 0.93438 0.88618 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.47 71.98 0.68 -1.09 16 2 C 0.25 3.68 3.12 44.25 0.14 3.82 16 3 H 0.14 2.11 7.58 -2.39 -0.02 2.10 16 4 N -0.69 -12.67 5.06 -447.43 -2.27 -14.94 16 5 C 0.53 12.45 7.85 87.27 0.69 13.14 16 6 O -0.52 -13.18 16.14 -3.24 -0.05 -13.23 16 7 C 0.50 14.72 7.89 87.27 0.69 15.41 16 8 O -0.55 -18.77 16.48 -3.24 -0.05 -18.82 16 9 N -0.68 -20.98 5.55 -464.41 -2.58 -23.56 16 10 C 0.14 5.37 5.61 86.38 0.48 5.86 16 11 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 12 C -0.54 -29.73 9.66 25.60 0.25 -29.48 16 13 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 14 C 0.01 0.38 5.47 84.65 0.46 0.85 16 15 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 16 Si 0.95 42.02 27.47 68.60 1.88 43.91 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.24 -9.48 6.54 99.48 0.65 -8.82 16 20 C 0.17 3.07 7.26 88.38 0.64 3.71 16 21 N -0.47 -9.16 11.55 -303.19 -3.50 -12.66 16 22 C 0.18 3.39 6.40 138.46 0.89 4.28 16 23 C 0.02 0.23 0.99 -52.93 -0.05 0.17 16 24 C -0.14 -1.55 7.97 71.98 0.57 -0.97 16 25 C -0.13 -1.31 8.46 71.98 0.61 -0.70 16 26 C -0.14 -1.56 8.46 71.98 0.61 -0.95 16 27 N -0.39 -8.35 11.47 -60.32 -0.69 -9.04 16 28 O 0.08 1.53 11.13 74.79 0.83 2.36 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.42 7.53 7.92 -92.71 -0.73 6.79 16 33 H 0.42 11.30 7.94 -92.71 -0.74 10.57 16 34 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.04 1.50 7.20 -2.38 -0.02 1.48 16 37 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.87 400.83 0.13 -69.74 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.53 Total: 20.78 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 6.78 Total: 13.40 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -8.74 Total: -118.14 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: 0.73 Total: -29.69 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Total: -69.87 0.13 -69.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346988430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.145 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds