Wall clock time and date at job start Tue Mar 31 2020 22:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.34778 * 120.00413 * 84.99868 * 4 2 1 6 6 O 1.21342 * 119.99815 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99768 * 179.97438 * 5 4 2 8 8 O 1.21342 * 120.00418 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99768 * 179.97438 * 7 5 4 10 10 C 1.46496 * 120.00030 * 179.97438 * 9 7 5 11 11 C 1.53008 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46889 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99343 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00636 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99709 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46902 * 89.99815 * 16 14 12 18 18 H 1.48492 * 109.46963 * 209.99993 * 16 14 12 19 19 H 1.48493 * 109.47106 * 330.00253 * 16 14 12 20 20 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 21 21 N 1.31138 * 126.55417 * 254.99944 * 20 2 1 22 22 C 1.34495 * 105.61509 * 179.97438 * 21 20 2 23 23 C 1.50700 * 126.28274 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47002 * 60.00309 * 23 22 21 25 25 C 1.53003 * 109.46681 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47323 * 300.00157 * 23 22 21 27 27 N 1.29942 * 107.42747 * 359.97438 * 22 21 20 28 28 O 1.21306 * 110.25137 * 0.02562 * 27 22 21 29 29 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 31 31 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 32 32 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 33 33 H 0.96998 * 119.99793 * 359.97438 * 9 7 5 34 34 H 1.08995 * 109.47526 * 299.99806 * 10 9 7 35 35 H 1.09004 * 109.47380 * 60.00343 * 10 9 7 36 36 H 1.08995 * 109.47057 * 300.00446 * 11 10 9 37 37 H 1.09004 * 109.46433 * 60.00115 * 11 10 9 38 38 H 0.97001 * 119.99882 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.47090 * 59.99531 * 24 23 22 40 40 H 1.08998 * 109.46995 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47167 * 300.00007 * 24 23 22 42 42 H 1.08995 * 109.47502 * 60.00197 * 25 23 22 43 43 H 1.09006 * 109.46694 * 180.02562 * 25 23 22 44 44 H 1.08997 * 109.47052 * 299.99827 * 25 23 22 45 45 H 1.09003 * 109.47116 * 60.00441 * 26 23 22 46 46 H 1.09006 * 109.47155 * 179.97438 * 26 23 22 47 47 H 1.09004 * 109.47279 * 299.99873 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8579 1.1592 -2.4117 7 6 2.6456 -0.7225 -3.5773 8 8 2.9350 -1.8996 -3.5227 9 7 2.7738 -0.0502 -4.7384 10 6 3.2631 -0.7405 -5.9343 11 6 3.3131 0.2424 -7.1059 12 6 3.8171 -0.4676 -8.3360 13 1 4.0754 -1.5151 -8.2871 14 6 3.9483 0.2202 -9.5237 15 7 3.6332 1.4957 -9.5833 16 14 4.5723 -0.6600 -11.0487 17 1 3.4231 -1.2328 -11.7946 18 1 5.2943 0.3048 -11.9163 19 1 5.4954 -1.7516 -10.6472 20 6 2.0323 -0.7104 1.2303 21 7 2.5498 -0.1520 2.2981 22 6 2.8507 -1.1669 3.1277 23 6 3.4724 -1.0466 4.4952 24 6 2.5635 -0.2088 5.3967 25 6 3.6469 -2.4410 5.1005 26 6 4.8386 -0.3682 4.3764 27 7 2.5069 -2.2702 2.5335 28 8 2.0348 -2.0300 1.4422 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 2.5421 0.8907 -4.7822 34 1 4.2627 -1.1315 -5.7448 35 1 2.5915 -1.5633 -6.1793 36 1 2.3134 0.6330 -7.2953 37 1 3.9845 1.0654 -6.8612 38 1 3.7259 1.9796 -10.4189 39 1 1.5902 -0.6921 5.4813 40 1 3.0130 -0.1221 6.3859 41 1 2.4396 0.7845 4.9653 42 1 4.2946 -3.0375 4.4581 43 1 4.0962 -2.3539 6.0898 44 1 2.6738 -2.9247 5.1850 45 1 4.7147 0.6252 3.9450 46 1 5.2881 -0.2808 5.3656 47 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346988431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:48 Heat of formation + Delta-G solvation = -21.891147 kcal Electronic energy + Delta-G solvation = -28513.638811 eV Core-core repulsion = 24313.498416 eV Total energy + Delta-G solvation = -4200.140395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.04698 -40.67595 -38.61061 -38.18348 -36.64806 -35.31424 -34.92650 -32.92611 -32.42926 -30.75800 -29.84102 -27.87139 -27.80319 -26.12516 -25.10695 -25.00780 -23.68418 -22.25080 -21.09728 -20.41604 -20.01171 -18.70149 -18.50770 -17.65856 -16.95055 -16.37615 -16.06435 -15.86373 -15.57048 -15.32256 -14.73102 -14.68651 -14.57683 -14.47956 -14.34797 -13.66785 -13.53959 -13.02806 -13.00345 -12.93288 -12.75562 -12.68192 -12.34239 -12.20303 -12.15512 -12.03532 -11.95952 -11.68438 -11.64093 -11.43612 -11.26980 -11.22719 -11.08166 -10.68713 -10.43146 -10.40448 -9.86077 -9.76600 -9.51949 -9.26534 -8.75759 -8.44160 -6.12047 -4.15833 0.64061 1.43479 1.74627 2.19730 2.26524 3.08703 3.27864 3.28703 3.34394 3.37875 3.50100 3.71784 4.15099 4.35277 4.37645 4.43895 4.45386 4.59070 4.65814 4.73480 5.08449 5.10330 5.11994 5.16202 5.24973 5.26054 5.28778 5.33856 5.35274 5.39163 5.52841 5.67406 5.67850 5.74817 5.77981 5.80353 6.13200 6.20018 6.52530 6.64423 6.78267 7.37572 7.51812 7.54820 7.72707 7.78044 7.84874 8.15068 8.27771 8.89706 9.49301 10.99318 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001727 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.317494 B =16205.326261 C =16517.290069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.243 3.757 3 H 0.138 0.862 4 N -0.707 5.707 5 C 0.518 3.482 6 O -0.510 6.510 7 C 0.499 3.501 8 O -0.529 6.529 9 N -0.683 5.683 10 C 0.118 3.882 11 C 0.011 3.989 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.171 3.829 21 N -0.461 5.461 22 C 0.182 3.818 23 C 0.023 3.977 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.140 4.140 27 N -0.373 5.373 28 O 0.084 5.916 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.419 0.581 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -2.966 30.541 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.136 3.864 3 H 0.155 0.845 4 N -0.364 5.364 5 C 0.299 3.701 6 O -0.383 6.383 7 C 0.278 3.722 8 O -0.406 6.406 9 N -0.334 5.334 10 C -0.003 4.003 11 C -0.027 4.027 12 C -0.563 4.563 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.051 4.051 21 N -0.194 5.194 22 C -0.091 4.091 23 C 0.021 3.979 24 C -0.196 4.196 25 C -0.198 4.198 26 C -0.198 4.198 27 N -0.079 5.079 28 O 0.025 5.975 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.256 0.744 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.107 -3.259 30.993 31.433 hybrid contribution 0.249 -0.394 -1.056 1.155 sum -3.858 -3.654 29.937 30.405 Atomic orbital electron populations 1.22278 0.91354 1.04111 1.04686 1.19381 0.95523 0.96024 0.75423 0.84470 1.45748 1.67081 1.15428 1.08168 1.20525 0.78158 0.86908 0.84497 1.90782 1.47664 1.15184 1.84683 1.19775 0.80758 0.87158 0.84511 1.90756 1.49786 1.15227 1.84863 1.46236 1.62769 1.15155 1.09275 1.21970 0.98528 0.96963 0.82861 1.19366 0.98282 0.94253 0.90786 1.21005 1.44639 0.96695 0.93931 0.92149 1.24998 0.95262 0.94876 0.99105 1.69957 1.48008 1.08176 1.26872 0.86497 0.78995 0.79395 0.82571 1.20537 1.21152 1.19739 1.28739 0.96621 0.81696 0.98023 1.71818 1.15503 1.30632 1.01489 1.25847 1.00149 0.83323 0.99814 1.19043 0.95624 0.98105 0.85086 1.21866 0.98759 1.00059 0.98946 1.21849 1.02842 0.94096 1.01031 1.21878 0.93921 1.01183 1.02780 1.74664 1.15290 1.23748 0.94176 1.85317 1.58245 1.26545 1.27442 0.90986 0.90281 0.89272 0.74379 0.75296 0.91764 0.91718 0.95601 0.95621 0.92759 0.92449 0.91021 0.91276 0.91865 0.91088 0.91949 0.91268 0.91000 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.47 37.16 0.35 -0.81 16 2 C 0.24 2.13 3.12 -69.09 -0.22 1.91 16 3 H 0.14 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.71 -7.36 5.06 -55.37 -0.28 -7.64 16 5 C 0.52 6.88 7.85 -11.58 -0.09 6.79 16 6 O -0.51 -7.45 16.14 5.50 0.09 -7.37 16 7 C 0.50 8.00 7.89 -11.58 -0.09 7.91 16 8 O -0.53 -9.51 16.48 5.50 0.09 -9.42 16 9 N -0.68 -11.73 5.55 -60.73 -0.34 -12.06 16 10 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 11 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 12 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.17 1.66 7.26 -13.05 -0.09 1.56 16 21 N -0.46 -4.83 11.55 -9.87 -0.11 -4.95 16 22 C 0.18 1.84 6.40 -156.38 -1.00 0.84 16 23 C 0.02 0.17 0.99 -155.66 -0.15 0.02 16 24 C -0.14 -0.83 8.46 37.16 0.31 -0.52 16 25 C -0.14 -0.91 7.97 37.16 0.30 -0.61 16 26 C -0.14 -0.93 8.45 37.15 0.31 -0.61 16 27 N -0.37 -4.14 11.47 30.90 0.35 -3.78 16 28 O 0.08 0.87 11.13 18.09 0.20 1.07 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.42 4.17 7.92 -40.81 -0.32 3.84 16 33 H 0.41 6.64 7.94 -40.82 -0.32 6.32 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -31.30 404.43 -6.48 -37.78 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.35 Total: 3.23 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.95 Total: 6.02 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.36 Total: -53.43 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.38 Total: -15.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.30 -6.48 -37.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346988431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.888 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds