Wall clock time and date at job start Tue Mar 31 2020 22:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 N 1.46497 * 109.46820 * 240.00641 * 2 1 3 5 5 C 1.34778 * 120.00413 * 84.99868 * 4 2 1 6 6 O 1.21342 * 119.99815 * 359.97438 * 5 4 2 7 7 C 1.49452 * 119.99768 * 179.97438 * 5 4 2 8 8 O 1.21342 * 120.00418 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99768 * 179.97438 * 7 5 4 10 10 C 1.46496 * 120.00030 * 179.97438 * 9 7 5 11 11 C 1.53008 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46889 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99343 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00636 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99709 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46902 * 89.99815 * 16 14 12 18 18 H 1.48492 * 109.46963 * 209.99993 * 16 14 12 19 19 H 1.48493 * 109.47106 * 330.00253 * 16 14 12 20 20 C 1.50691 * 109.47278 * 120.00283 * 2 1 3 21 21 N 1.31138 * 126.55417 * 254.99944 * 20 2 1 22 22 C 1.34495 * 105.61509 * 179.97438 * 21 20 2 23 23 C 1.50700 * 126.28274 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47002 * 60.00309 * 23 22 21 25 25 C 1.53003 * 109.46681 * 180.02562 * 23 22 21 26 26 C 1.52995 * 109.47323 * 300.00157 * 23 22 21 27 27 N 1.29942 * 107.42747 * 359.97438 * 22 21 20 28 28 O 1.21306 * 110.25137 * 0.02562 * 27 22 21 29 29 H 1.08997 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46748 * 299.99849 * 1 2 3 31 31 H 1.08996 * 109.47636 * 59.99528 * 1 2 3 32 32 H 0.97012 * 119.99791 * 264.99812 * 4 2 1 33 33 H 0.96998 * 119.99793 * 359.97438 * 9 7 5 34 34 H 1.08995 * 109.47526 * 299.99806 * 10 9 7 35 35 H 1.09004 * 109.47380 * 60.00343 * 10 9 7 36 36 H 1.08995 * 109.47057 * 300.00446 * 11 10 9 37 37 H 1.09004 * 109.46433 * 60.00115 * 11 10 9 38 38 H 0.97001 * 119.99882 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.47090 * 59.99531 * 24 23 22 40 40 H 1.08998 * 109.46995 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47167 * 300.00007 * 24 23 22 42 42 H 1.08995 * 109.47502 * 60.00197 * 25 23 22 43 43 H 1.09006 * 109.46694 * 180.02562 * 25 23 22 44 44 H 1.08997 * 109.47052 * 299.99827 * 25 23 22 45 45 H 1.09003 * 109.47116 * 60.00441 * 26 23 22 46 46 H 1.09006 * 109.47155 * 179.97438 * 26 23 22 47 47 H 1.09004 * 109.47279 * 299.99873 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8579 1.1592 -2.4117 7 6 2.6456 -0.7225 -3.5773 8 8 2.9350 -1.8996 -3.5227 9 7 2.7738 -0.0502 -4.7384 10 6 3.2631 -0.7405 -5.9343 11 6 3.3131 0.2424 -7.1059 12 6 3.8171 -0.4676 -8.3360 13 1 4.0754 -1.5151 -8.2871 14 6 3.9483 0.2202 -9.5237 15 7 3.6332 1.4957 -9.5833 16 14 4.5723 -0.6600 -11.0487 17 1 3.4231 -1.2328 -11.7946 18 1 5.2943 0.3048 -11.9163 19 1 5.4954 -1.7516 -10.6472 20 6 2.0323 -0.7104 1.2303 21 7 2.5498 -0.1520 2.2981 22 6 2.8507 -1.1669 3.1277 23 6 3.4724 -1.0466 4.4952 24 6 2.5635 -0.2088 5.3967 25 6 3.6469 -2.4410 5.1005 26 6 4.8386 -0.3682 4.3764 27 7 2.5069 -2.2702 2.5335 28 8 2.0348 -2.0300 1.4422 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6318 -1.1527 33 1 2.5421 0.8907 -4.7822 34 1 4.2627 -1.1315 -5.7448 35 1 2.5915 -1.5633 -6.1793 36 1 2.3134 0.6330 -7.2953 37 1 3.9845 1.0654 -6.8612 38 1 3.7259 1.9796 -10.4189 39 1 1.5902 -0.6921 5.4813 40 1 3.0130 -0.1221 6.3859 41 1 2.4396 0.7845 4.9653 42 1 4.2946 -3.0375 4.4581 43 1 4.0962 -2.3539 6.0898 44 1 2.6738 -2.9247 5.1850 45 1 4.7147 0.6252 3.9450 46 1 5.2881 -0.2808 5.3656 47 1 5.4861 -0.9651 3.7342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346988431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:47 Heat of formation + Delta-G solvation = -45.217655 kcal Electronic energy + Delta-G solvation = -28514.650324 eV Core-core repulsion = 24313.498416 eV Total energy + Delta-G solvation = -4201.151908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.83789 -41.85126 -39.86719 -38.79936 -37.59988 -36.73058 -35.85817 -34.83524 -33.30145 -31.72983 -31.46839 -28.38184 -28.28994 -27.55918 -26.24939 -25.75105 -24.98644 -23.19693 -22.71113 -21.58640 -20.76656 -19.83354 -19.31558 -18.58475 -18.48925 -17.87696 -17.19941 -16.89531 -16.58977 -16.45835 -16.20849 -15.87827 -15.64129 -15.23886 -14.99911 -14.95136 -14.75688 -14.30115 -14.18717 -13.76448 -13.53778 -13.35668 -13.24283 -13.16910 -12.94012 -12.89098 -12.76889 -12.71244 -12.65184 -12.56445 -12.52476 -12.35053 -12.26939 -12.03477 -11.84942 -11.67815 -11.43080 -11.18183 -10.77904 -10.68235 -10.60183 -10.20495 -8.22334 -6.33137 -0.15137 0.23939 0.92294 1.20291 1.44270 1.44433 1.46231 1.55812 2.05587 2.26691 2.42363 2.61488 2.83516 3.12828 3.33556 3.50434 3.76740 3.83094 3.88054 3.98780 4.05437 4.40102 4.43199 4.47181 4.51305 4.60087 4.65593 4.68393 4.70060 4.75670 4.83439 4.86536 4.87211 4.91765 4.98129 5.07438 5.12379 5.17116 5.25438 5.29395 5.43748 5.57209 5.71662 5.80363 6.14374 6.25016 6.56990 6.79780 6.88186 6.95467 7.36373 8.89441 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.001727 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.317494 B =16205.326261 C =16517.290069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.247 3.753 3 H 0.139 0.861 4 N -0.693 5.693 5 C 0.530 3.470 6 O -0.522 6.522 7 C 0.502 3.498 8 O -0.547 6.547 9 N -0.685 5.685 10 C 0.137 3.863 11 C 0.018 3.982 12 C -0.545 4.545 13 H 0.064 0.936 14 C 0.006 3.994 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.176 3.824 21 N -0.473 5.473 22 C 0.178 3.822 23 C 0.017 3.983 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.136 4.136 27 N -0.392 5.392 28 O 0.078 5.922 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.423 0.577 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.265 0.735 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 -3.500 31.930 32.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.141 3.859 3 H 0.156 0.844 4 N -0.349 5.349 5 C 0.311 3.689 6 O -0.397 6.397 7 C 0.282 3.718 8 O -0.425 6.425 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.020 4.020 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.193 4.193 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.046 4.046 21 N -0.207 5.207 22 C -0.095 4.095 23 C 0.016 3.984 24 C -0.191 4.191 25 C -0.194 4.194 26 C -0.194 4.194 27 N -0.099 5.099 28 O 0.021 5.979 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.261 0.739 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.103 -3.808 32.414 32.894 hybrid contribution 0.238 -0.229 -1.401 1.440 sum -3.866 -4.037 31.013 31.513 Atomic orbital electron populations 1.22269 0.89561 1.04835 1.05265 1.19540 0.96735 0.95501 0.74147 0.84383 1.45663 1.65906 1.15504 1.07824 1.19833 0.78383 0.86450 0.84275 1.90792 1.48597 1.15502 1.84785 1.20157 0.79861 0.86882 0.84872 1.90747 1.50391 1.16123 1.85267 1.46043 1.63206 1.15387 1.09041 1.21492 0.98520 0.95769 0.82745 1.19189 0.96641 0.94371 0.91790 1.21454 1.44537 0.97151 0.95172 0.91759 1.25887 0.95436 0.95592 1.02385 1.70071 1.49119 1.09645 1.27792 0.85432 0.78607 0.78328 0.78591 1.19803 1.20821 1.18889 1.28846 0.96143 0.81544 0.98073 1.71834 1.15932 1.30998 1.01911 1.26436 0.99488 0.82882 1.00651 1.19297 0.96078 0.99016 0.84055 1.21846 0.98460 0.99145 0.99681 1.21830 1.02383 0.93219 1.01947 1.21866 0.93398 1.00229 1.03908 1.74661 1.16246 1.24398 0.94574 1.85296 1.58429 1.26759 1.27429 0.90230 0.88714 0.89624 0.73924 0.74695 0.92074 0.91840 0.97174 0.97317 0.92607 0.92844 0.88723 0.92036 0.93075 0.88700 0.92629 0.92175 0.88590 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.47 71.98 0.68 -1.30 16 2 C 0.25 4.01 3.12 44.24 0.14 4.14 16 3 H 0.14 2.32 7.58 -2.39 -0.02 2.31 16 4 N -0.69 -13.66 5.06 -447.45 -2.27 -15.92 16 5 C 0.53 13.59 7.85 87.27 0.69 14.28 16 6 O -0.52 -14.76 16.14 -3.22 -0.05 -14.81 16 7 C 0.50 15.80 7.89 87.27 0.69 16.49 16 8 O -0.55 -19.30 16.48 -3.22 -0.05 -19.35 16 9 N -0.69 -23.45 5.55 -464.41 -2.58 -26.03 16 10 C 0.14 5.55 5.61 86.38 0.48 6.04 16 11 C 0.02 0.87 5.09 29.85 0.15 1.02 16 12 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.01 0.32 5.46 84.65 0.46 0.78 16 15 N -0.93 -54.02 13.29 21.45 0.28 -53.74 16 16 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 C 0.18 3.24 7.26 88.38 0.64 3.88 16 21 N -0.47 -9.55 11.55 -303.18 -3.50 -13.06 16 22 C 0.18 3.49 6.40 138.46 0.89 4.38 16 23 C 0.02 0.24 0.99 -52.93 -0.05 0.18 16 24 C -0.13 -1.38 8.46 71.98 0.61 -0.77 16 25 C -0.14 -1.58 7.97 71.98 0.57 -1.01 16 26 C -0.14 -1.63 8.45 71.98 0.61 -1.02 16 27 N -0.39 -8.51 11.47 -60.30 -0.69 -9.20 16 28 O 0.08 1.58 11.13 74.81 0.83 2.42 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.42 7.97 7.92 -92.70 -0.73 7.23 16 33 H 0.42 13.49 7.94 -92.71 -0.74 12.76 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 39 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -66.40 404.43 0.32 -66.08 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -0.47 Total: 20.90 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.79 Total: 17.73 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -8.75 Total: -117.95 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: 0.73 Total: -31.75 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.40 0.32 -66.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346988431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.862 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds