Wall clock time and date at job start Tue Mar 31 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47389 * 2 1 4 4 C 1.50706 * 109.47169 * 239.99673 * 2 1 3 5 5 H 1.08000 * 119.99969 * 274.71371 * 4 2 1 6 6 C 1.37882 * 119.99529 * 94.71170 * 4 2 1 7 7 N 1.31515 * 119.99583 * 184.48585 * 6 4 2 8 8 Si 1.86800 * 120.00391 * 4.48903 * 6 4 2 9 9 H 1.48497 * 109.47024 * 94.38874 * 8 6 4 10 10 H 1.48495 * 109.47031 * 214.39194 * 8 6 4 11 11 H 1.48501 * 109.46713 * 334.39345 * 8 6 4 12 12 N 1.46500 * 109.47140 * 119.99751 * 2 1 3 13 13 C 1.46508 * 119.99924 * 60.00156 * 12 2 1 14 14 C 1.34780 * 120.00267 * 239.99860 * 12 2 1 15 15 O 1.21590 * 119.99536 * 3.45107 * 14 12 2 16 16 C 1.47519 * 120.00300 * 183.45393 * 14 12 2 17 17 C 1.36595 * 125.77475 * 173.21533 * 16 14 12 18 18 N 1.34807 * 106.84165 * 180.13192 * 17 16 14 19 19 C 1.46504 * 126.59491 * 179.90476 * 18 17 16 20 20 C 1.50701 * 109.46910 * 124.71365 * 19 18 17 21 21 O 1.20832 * 119.99955 * 0.02562 * 20 19 18 22 22 O 1.34222 * 119.99883 * 179.72524 * 20 19 18 23 23 C 1.45201 * 116.99985 * 180.27419 * 22 20 19 24 24 C 1.52998 * 109.47003 * 60.00578 * 23 22 20 25 25 C 1.53006 * 109.47183 * 180.02562 * 23 22 20 26 26 C 1.52991 * 109.47284 * 300.00255 * 23 22 20 27 27 N 1.40213 * 106.81191 * 359.65120 * 18 17 16 28 28 N 1.28757 * 108.36730 * 0.21797 * 27 18 17 29 29 H 1.08998 * 109.47433 * 174.95920 * 1 2 3 30 30 H 1.08999 * 109.47133 * 294.96089 * 1 2 3 31 31 H 1.08996 * 109.47378 * 54.95935 * 1 2 3 32 32 H 0.97001 * 120.00108 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46702 * 263.95722 * 13 12 2 34 34 H 1.08998 * 109.47010 * 23.96117 * 13 12 2 35 35 H 1.08998 * 109.46584 * 143.96014 * 13 12 2 36 36 H 1.08002 * 126.57229 * 0.02562 * 17 16 14 37 37 H 1.08993 * 109.46920 * 4.71817 * 19 18 17 38 38 H 1.08999 * 109.47173 * 244.71692 * 19 18 17 39 39 H 1.08997 * 109.47504 * 59.99481 * 24 23 22 40 40 H 1.08998 * 109.47262 * 180.02562 * 24 23 22 41 41 H 1.09002 * 109.46975 * 299.99279 * 24 23 22 42 42 H 1.09000 * 109.46956 * 59.99926 * 25 23 22 43 43 H 1.08998 * 109.46959 * 180.02562 * 25 23 22 44 44 H 1.08997 * 109.46889 * 300.00253 * 25 23 22 45 45 H 1.09002 * 109.47439 * 60.00264 * 26 23 22 46 46 H 1.09005 * 109.47040 * 180.02562 * 26 23 22 47 47 H 1.09002 * 109.47572 * 299.99454 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1398 -1.7851 -1.2274 6 6 2.3545 0.0115 -2.3601 7 7 2.7084 -0.6140 -3.4615 8 14 2.2887 1.8780 -2.3260 9 1 3.6373 2.4153 -2.0133 10 1 1.8503 2.3821 -3.6522 11 1 1.3261 2.3204 -1.2853 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0352 1.1452 1.9236 16 6 3.3476 -0.7512 3.2481 17 6 4.2458 -0.2440 4.1436 18 7 4.4913 -1.2167 5.0441 19 6 5.3950 -1.1343 6.1942 20 6 4.6391 -1.4755 7.4525 21 8 3.4659 -1.7589 7.3944 22 8 5.2705 -1.4704 8.6369 23 6 4.4814 -1.8149 9.8060 24 6 3.9216 -3.2297 9.6447 25 6 5.3651 -1.7548 11.0537 26 6 3.3259 -0.8228 9.9519 27 7 3.7108 -2.3204 4.6717 28 7 3.0505 -2.0110 3.6105 29 1 -0.3634 -1.0236 -0.0903 30 1 -0.3633 0.4337 0.9317 31 1 -0.3634 0.5900 -0.8413 32 1 2.9354 -0.1061 -4.2561 33 1 0.7989 -2.1451 2.0886 34 1 1.4249 -2.5694 0.4773 35 1 2.5060 -2.6085 1.8908 36 1 4.6778 0.7458 4.1313 37 1 5.7924 -0.1224 6.2722 38 1 6.2167 -1.8381 6.0618 39 1 4.7448 -3.9365 9.5408 40 1 3.3289 -3.4882 10.5221 41 1 3.2919 -3.2721 8.7560 42 1 5.7636 -0.7468 11.1684 43 1 4.7728 -2.0139 11.9312 44 1 6.1885 -2.4614 10.9500 45 1 2.6962 -0.8653 9.0632 46 1 2.7338 -1.0812 10.8299 47 1 3.7246 0.1851 10.0669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361567860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:58 Heat of formation + Delta-G solvation = -1.889832 kcal Electronic energy + Delta-G solvation = -29676.119338 eV Core-core repulsion = 25476.846265 eV Total energy + Delta-G solvation = -4199.273073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22958 -41.23210 -38.81874 -37.60434 -35.41535 -34.93182 -34.42412 -32.59980 -31.05725 -30.23944 -28.80946 -27.89602 -27.85315 -26.06440 -25.21315 -23.77279 -23.48421 -21.82661 -20.90347 -20.12451 -18.88607 -17.89479 -17.52684 -17.07592 -16.75418 -16.64358 -15.95440 -15.66046 -15.46869 -14.89416 -14.62740 -14.60554 -14.14158 -14.05153 -14.03469 -13.47889 -13.06966 -12.98877 -12.61740 -12.46008 -12.45675 -12.39868 -12.32303 -12.28675 -12.05922 -11.93504 -11.86297 -11.66853 -11.36973 -11.02912 -10.88681 -10.79088 -10.72411 -10.55645 -10.36535 -10.18273 -9.68661 -9.32006 -9.15740 -9.11978 -8.56291 -7.58360 -6.12484 -4.14263 1.04998 1.60643 1.65401 2.03672 2.27521 3.32984 3.41542 3.48361 3.71750 3.86512 3.97126 4.08213 4.20764 4.26211 4.34057 4.40648 4.41919 4.43138 4.87074 5.00236 5.07165 5.08570 5.18478 5.21786 5.26624 5.28829 5.33763 5.36735 5.52518 5.76043 5.78946 5.83643 5.98900 6.19004 6.20151 6.31193 6.37240 6.50665 6.64960 6.76929 6.99645 7.15669 7.26916 7.52236 7.68411 8.01826 8.21143 8.54217 8.88205 8.93870 9.49712 10.99366 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.002262 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.761197 B =12376.488433 C =12552.787836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.220 3.780 3 H 0.068 0.932 4 C -0.523 4.523 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.568 5.568 13 C 0.080 3.920 14 C 0.586 3.414 15 O -0.558 6.558 16 C -0.077 4.077 17 C 0.087 3.913 18 N -0.368 5.368 19 C 0.136 3.864 20 C 0.450 3.550 21 O -0.468 6.468 22 O -0.349 6.349 23 C 0.120 3.880 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.185 4.185 27 N -0.049 5.049 28 N -0.195 5.195 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.266 0.734 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.205 0.795 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -1.679 28.974 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.119 3.881 3 H 0.086 0.914 4 C -0.561 4.561 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.296 5.296 13 C -0.064 4.064 14 C 0.371 3.629 15 O -0.438 6.438 16 C -0.214 4.214 17 C -0.067 4.067 18 N -0.156 5.156 19 C 0.012 3.988 20 C 0.289 3.711 21 O -0.352 6.352 22 O -0.266 6.266 23 C 0.084 3.916 24 C -0.242 4.242 25 C -0.198 4.198 26 C -0.242 4.242 27 N -0.029 5.029 28 N -0.070 5.070 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.222 0.778 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.701 -2.578 29.047 29.921 hybrid contribution 0.338 1.786 -0.115 1.821 sum 7.038 -0.791 28.932 29.786 Atomic orbital electron populations 1.22197 0.98126 1.01022 0.99093 1.19474 0.91042 0.95085 0.82471 0.91415 1.21145 1.44500 0.95853 0.94583 0.90221 1.24965 0.93835 0.98510 0.95229 1.69899 1.45252 1.35978 1.01744 0.86886 0.79584 0.86180 0.77332 1.19943 1.21286 1.18306 1.48197 1.47141 1.12361 1.21920 1.21971 1.00761 0.82116 1.01582 1.16851 0.79541 0.85723 0.80799 1.90732 1.61975 1.14941 1.76146 1.21808 1.04805 0.92630 1.02201 1.23298 0.98028 0.95669 0.89656 1.49833 1.33301 1.12102 1.20323 1.21168 0.90546 1.07744 0.79353 1.23205 0.87031 0.75489 0.85357 1.90726 1.16441 1.41539 1.86516 1.86491 1.44255 1.80558 1.15332 1.22265 0.91116 0.95571 0.82610 1.22505 1.02359 0.94541 1.04787 1.21864 0.99952 1.03457 0.94480 1.22505 0.98376 0.98711 1.04578 1.82086 1.05027 1.06466 1.09290 1.74868 1.15432 1.12083 1.04614 0.93031 0.95435 0.92624 0.92454 0.93784 0.90512 0.89955 0.77786 0.83767 0.84352 0.91784 0.90843 0.89576 0.91353 0.90126 0.91306 0.89808 0.90772 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.10 37.15 0.34 -2.86 16 2 C 0.22 5.45 2.25 -69.08 -0.16 5.30 16 3 H 0.07 1.81 3.87 -51.93 -0.20 1.61 16 4 C -0.52 -14.61 8.69 -34.44 -0.30 -14.91 16 5 H 0.08 2.37 6.91 -52.49 -0.36 2.01 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 7 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 8 Si 0.87 22.10 27.28 -169.99 -4.64 17.46 16 9 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.26 -6.35 6.41 56.52 0.36 -5.99 16 12 N -0.57 -12.77 2.75 -176.50 -0.49 -13.25 16 13 C 0.08 1.55 8.68 59.85 0.52 2.07 16 14 C 0.59 12.69 7.67 -12.48 -0.10 12.59 16 15 O -0.56 -13.29 16.20 5.29 0.09 -13.20 16 16 C -0.08 -1.36 6.69 -83.55 -0.56 -1.92 16 17 C 0.09 1.14 11.28 -16.84 -0.19 0.95 16 18 N -0.37 -4.33 3.41 -62.24 -0.21 -4.54 16 19 C 0.14 0.88 7.13 -5.19 -0.04 0.85 16 20 C 0.45 4.02 7.30 36.01 0.26 4.29 16 21 O -0.47 -5.85 11.23 -18.75 -0.21 -6.07 16 22 O -0.35 -2.67 9.89 -39.24 -0.39 -3.06 16 23 C 0.12 0.84 1.13 -90.62 -0.10 0.74 16 24 C -0.18 -1.38 8.37 37.16 0.31 -1.06 16 25 C -0.14 -0.64 8.85 37.16 0.33 -0.31 16 26 C -0.18 -1.35 8.37 37.15 0.31 -1.04 16 27 N -0.05 -0.76 12.89 60.35 0.78 0.02 16 28 N -0.20 -3.43 8.82 32.85 0.29 -3.14 16 29 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.55 6.64 -51.93 -0.34 1.20 16 35 H 0.08 1.56 5.32 -51.93 -0.28 1.28 16 36 H 0.21 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.14 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.88 5.89 -51.93 -0.31 0.57 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.83 5.89 -51.93 -0.31 0.53 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -36.51 384.40 -4.55 -41.06 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.87 Total: -1.72 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 0.54 Total: 6.85 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.14 Total: -47.11 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.51 Total: -22.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.64 Total: 17.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.51 -4.55 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361567860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.166 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds