Wall clock time and date at job start Tue Mar 31 2020 22:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21569 * 120.00002 * 0.02562 * 13 12 2 15 15 C 1.47725 * 119.99920 * 180.02562 * 13 12 2 16 16 C 1.41014 * 125.96219 * 179.72358 * 15 13 12 17 17 C 1.35753 * 107.79007 * 179.82597 * 16 15 13 18 18 N 1.39542 * 126.10481 * 180.15437 * 17 16 15 19 19 C 1.34776 * 120.00372 * 0.31850 * 18 17 16 20 20 O 1.21514 * 119.99747 * 359.97438 * 19 18 17 21 21 O 1.34653 * 120.00044 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99939 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46590 * 59.99884 * 22 21 19 24 24 C 1.52992 * 109.47050 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47140 * 300.00016 * 22 21 19 26 26 N 1.35958 * 107.78605 * 0.42669 * 17 16 15 27 27 C 1.46495 * 125.95575 * 179.74751 * 26 17 16 28 28 N 1.31876 * 125.96600 * 0.02562 * 15 13 12 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 34 34 H 1.08002 * 126.10705 * 359.97438 * 16 15 13 35 35 H 0.97001 * 119.99877 * 180.32427 * 18 17 16 36 36 H 1.08996 * 109.47102 * 60.00517 * 23 22 21 37 37 H 1.09003 * 109.46992 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47136 * 299.99843 * 23 22 21 39 39 H 1.09001 * 109.47373 * 60.00140 * 24 22 21 40 40 H 1.09003 * 109.46922 * 180.02562 * 24 22 21 41 41 H 1.09005 * 109.47695 * 300.00003 * 24 22 21 42 42 H 1.09007 * 109.47292 * 59.99987 * 25 22 21 43 43 H 1.09003 * 109.46866 * 179.97438 * 25 22 21 44 44 H 1.08999 * 109.47539 * 299.99895 * 25 22 21 45 45 H 1.08999 * 109.47285 * 269.99662 * 27 26 17 46 46 H 1.09002 * 109.47337 * 30.00010 * 27 26 17 47 47 H 1.09008 * 109.46856 * 149.99756 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1614 -2.4116 15 6 2.6388 -0.7148 -3.5634 16 6 2.8158 -0.1384 -4.8382 17 6 3.2855 -1.1042 -5.6685 18 7 3.5963 -0.9472 -7.0198 19 6 3.4421 0.2539 -7.6116 20 8 3.0321 1.1998 -6.9685 21 8 3.7416 0.4052 -8.9156 22 6 3.5506 1.7265 -9.4868 23 6 4.4289 2.7351 -8.7434 24 6 3.9408 1.7039 -10.9659 25 6 2.0818 2.1328 -9.3524 26 7 3.3934 -2.2533 -4.9499 27 6 3.8575 -3.5461 -5.4593 28 7 2.9838 -1.9855 -3.6376 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9042 -0.5275 4.4376 33 1 2.2490 -1.6317 -1.1527 34 1 2.6157 0.8887 -5.1056 35 1 3.9232 -1.7024 -7.5332 36 1 5.4753 2.4456 -8.8393 37 1 4.2859 3.7269 -9.1724 38 1 4.1513 2.7512 -7.6895 39 1 3.3155 0.9853 -11.4958 40 1 3.7979 2.6959 -11.3946 41 1 4.9874 1.4147 -11.0614 42 1 1.8042 2.1490 -8.2984 43 1 1.9386 3.1249 -9.7807 44 1 1.4561 1.4143 -9.8818 45 1 3.0073 -4.1143 -5.8366 46 1 4.5726 -3.3834 -6.2657 47 1 4.3380 -4.1024 -4.6544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362145709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:33 Heat of formation + Delta-G solvation = -20.103284 kcal Electronic energy + Delta-G solvation = -29522.684449 eV Core-core repulsion = 25322.621581 eV Total energy + Delta-G solvation = -4200.062867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84430 -40.86622 -38.72395 -37.78898 -35.42542 -34.93644 -34.29985 -33.29063 -32.28144 -30.07908 -29.01508 -27.81674 -27.73040 -27.15983 -25.12442 -24.04438 -23.25566 -21.10963 -20.80533 -20.13416 -19.51730 -18.69842 -17.89599 -16.80839 -16.80771 -16.67524 -15.80255 -15.77667 -15.52619 -15.06974 -14.75459 -14.71060 -14.29178 -14.06596 -13.93887 -13.62430 -13.12178 -13.05970 -12.92618 -12.85469 -12.70584 -12.57063 -12.30731 -12.30387 -12.12115 -12.01175 -11.74135 -11.68354 -11.29219 -11.12124 -10.91337 -10.78006 -10.74214 -10.23437 -10.11198 -9.70952 -9.29372 -9.16498 -9.09880 -8.68651 -8.31543 -8.08019 -6.13664 -4.15671 1.23265 1.38719 2.10773 2.34707 2.68295 3.30027 3.41603 3.45413 3.47501 3.93725 3.96565 4.25157 4.28956 4.34614 4.38826 4.48835 4.82761 4.92871 4.98403 5.07608 5.12906 5.15782 5.21045 5.26215 5.31479 5.33630 5.41675 5.48863 5.59678 5.71420 5.92364 5.95408 5.98477 6.06541 6.39637 6.45778 6.54064 6.63504 6.65964 6.92988 6.97259 7.24941 7.33037 7.48227 7.57969 7.84830 8.24132 8.60382 8.83197 8.96816 9.46947 10.98510 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002415 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.657985 B =11590.292936 C =12678.469491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.260 1.260 12 N -0.683 5.683 13 C 0.585 3.415 14 O -0.537 6.537 15 C 0.057 3.943 16 C -0.216 4.216 17 C 0.303 3.697 18 N -0.627 5.627 19 C 0.659 3.341 20 O -0.525 6.525 21 O -0.359 6.359 22 C 0.137 3.863 23 C -0.187 4.187 24 C -0.140 4.140 25 C -0.187 4.187 26 N -0.381 5.381 27 C 0.097 3.903 28 N -0.242 5.242 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.402 0.598 34 H 0.185 0.815 35 H 0.415 0.585 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -1.778 -31.366 31.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.331 5.331 13 C 0.367 3.633 14 O -0.413 6.413 15 C -0.111 4.111 16 C -0.248 4.248 17 C 0.086 3.914 18 N -0.281 5.281 19 C 0.412 3.588 20 O -0.410 6.410 21 O -0.273 6.273 22 C 0.101 3.899 23 C -0.244 4.244 24 C -0.197 4.197 25 C -0.244 4.244 26 N -0.171 5.171 27 C -0.044 4.044 28 N -0.070 5.070 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.202 0.798 35 H 0.251 0.749 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.566 -1.543 -30.393 30.772 hybrid contribution -0.277 0.357 -0.587 0.741 sum 4.289 -1.185 -30.980 31.298 Atomic orbital electron populations 1.22456 0.99100 1.01010 0.99429 1.19187 0.90301 0.94787 0.82529 0.93059 1.21037 1.33143 1.14420 0.88424 0.90075 1.24830 0.95541 0.96738 0.95490 1.69876 1.45004 1.40151 0.97992 0.86876 0.80508 0.83660 0.77468 1.20304 1.22215 1.18491 1.46114 1.63713 1.14203 1.09111 1.16969 0.78727 0.86003 0.81627 1.90767 1.51267 1.14898 1.84371 1.22387 1.01082 0.91457 0.96164 1.21602 1.11061 1.01936 0.90193 1.17398 1.02908 0.88830 0.82286 1.40965 1.68129 1.11657 1.07341 1.17580 0.77373 0.82538 0.81266 1.90947 1.47820 1.38308 1.63969 1.86284 1.80944 1.37557 1.22565 1.22218 0.96725 0.77837 0.93124 1.22556 0.99401 0.98689 1.03773 1.21874 1.02721 1.03365 0.91781 1.22553 0.94047 1.02187 1.05613 1.48691 1.54074 1.07581 1.06785 1.21900 1.00281 0.81598 1.00605 1.77844 1.19742 1.15858 0.93553 0.93358 0.94345 0.92707 0.92350 0.76372 0.79802 0.74876 0.92011 0.90724 0.89039 0.91387 0.89802 0.91379 0.89052 0.90725 0.92026 0.90365 0.90079 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 8.97 37.16 0.33 -3.45 16 2 C 0.24 5.90 2.15 -69.08 -0.15 5.76 16 3 H 0.05 1.40 6.63 -51.93 -0.34 1.05 16 4 C -0.53 -14.90 9.31 -34.44 -0.32 -15.22 16 5 H 0.08 2.39 7.98 -52.49 -0.42 1.97 16 6 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 7 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 8 Si 0.89 22.26 24.37 -169.99 -4.14 18.11 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.68 -15.12 5.07 -55.92 -0.28 -15.40 16 13 C 0.59 12.71 7.79 -12.39 -0.10 12.62 16 14 O -0.54 -13.18 16.56 5.30 0.09 -13.10 16 15 C 0.06 1.05 7.09 -82.92 -0.59 0.47 16 16 C -0.22 -3.63 9.41 -39.42 -0.37 -4.00 16 17 C 0.30 3.94 7.67 -152.59 -1.17 2.77 16 18 N -0.63 -5.95 5.42 -15.80 -0.09 -6.03 16 19 C 0.66 7.25 8.02 54.05 0.43 7.68 16 20 O -0.53 -7.26 9.00 -19.28 -0.17 -7.43 16 21 O -0.36 -3.21 9.94 -40.36 -0.40 -3.61 16 22 C 0.14 1.05 1.13 -90.62 -0.10 0.95 16 23 C -0.19 -1.51 8.37 37.16 0.31 -1.20 16 24 C -0.14 -0.69 8.85 37.15 0.33 -0.36 16 25 C -0.19 -1.49 8.37 37.15 0.31 -1.18 16 26 N -0.38 -4.67 4.04 -67.07 -0.27 -4.94 16 27 C 0.10 0.63 11.28 59.84 0.68 1.31 16 28 N -0.24 -3.94 12.26 33.34 0.41 -3.53 16 29 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.40 8.25 8.23 -40.82 -0.34 7.92 16 34 H 0.18 3.34 5.81 -52.49 -0.30 3.04 16 35 H 0.42 2.33 8.08 -40.82 -0.33 2.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.28 7.50 -51.93 -0.39 -0.11 16 47 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -35.33 382.11 -5.57 -40.90 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.74 Total: 7.20 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.50 Total: 8.27 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.54 Total: -56.11 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.49 Total: -24.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.33 -5.57 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362145709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.796 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds