Wall clock time and date at job start Tue Mar 31 2020 22:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.34770 * 119.99955 * 84.99585 * 12 2 1 14 14 O 1.21569 * 120.00002 * 0.02562 * 13 12 2 15 15 C 1.47725 * 119.99920 * 180.02562 * 13 12 2 16 16 C 1.41014 * 125.96219 * 179.72358 * 15 13 12 17 17 C 1.35753 * 107.79007 * 179.82597 * 16 15 13 18 18 N 1.39542 * 126.10481 * 180.15437 * 17 16 15 19 19 C 1.34776 * 120.00372 * 0.31850 * 18 17 16 20 20 O 1.21514 * 119.99747 * 359.97438 * 19 18 17 21 21 O 1.34653 * 120.00044 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99939 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46590 * 59.99884 * 22 21 19 24 24 C 1.52992 * 109.47050 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47140 * 300.00016 * 22 21 19 26 26 N 1.35958 * 107.78605 * 0.42669 * 17 16 15 27 27 C 1.46495 * 125.95575 * 179.74751 * 26 17 16 28 28 N 1.31876 * 125.96600 * 0.02562 * 15 13 12 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 33 33 H 0.96997 * 120.00110 * 265.00363 * 12 2 1 34 34 H 1.08002 * 126.10705 * 359.97438 * 16 15 13 35 35 H 0.97001 * 119.99877 * 180.32427 * 18 17 16 36 36 H 1.08996 * 109.47102 * 60.00517 * 23 22 21 37 37 H 1.09003 * 109.46992 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47136 * 299.99843 * 23 22 21 39 39 H 1.09001 * 109.47373 * 60.00140 * 24 22 21 40 40 H 1.09003 * 109.46922 * 180.02562 * 24 22 21 41 41 H 1.09005 * 109.47695 * 300.00003 * 24 22 21 42 42 H 1.09007 * 109.47292 * 59.99987 * 25 22 21 43 43 H 1.09003 * 109.46866 * 179.97438 * 25 22 21 44 44 H 1.08999 * 109.47539 * 299.99895 * 25 22 21 45 45 H 1.08999 * 109.47285 * 269.99662 * 27 26 17 46 46 H 1.09002 * 109.47337 * 30.00010 * 27 26 17 47 47 H 1.09008 * 109.46856 * 149.99756 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1614 -2.4116 15 6 2.6388 -0.7148 -3.5634 16 6 2.8158 -0.1384 -4.8382 17 6 3.2855 -1.1042 -5.6685 18 7 3.5963 -0.9472 -7.0198 19 6 3.4421 0.2539 -7.6116 20 8 3.0321 1.1998 -6.9685 21 8 3.7416 0.4052 -8.9156 22 6 3.5506 1.7265 -9.4868 23 6 4.4289 2.7351 -8.7434 24 6 3.9408 1.7039 -10.9659 25 6 2.0818 2.1328 -9.3524 26 7 3.3934 -2.2533 -4.9499 27 6 3.8575 -3.5461 -5.4593 28 7 2.9838 -1.9855 -3.6376 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9042 -0.5275 4.4376 33 1 2.2490 -1.6317 -1.1527 34 1 2.6157 0.8887 -5.1056 35 1 3.9232 -1.7024 -7.5332 36 1 5.4753 2.4456 -8.8393 37 1 4.2859 3.7269 -9.1724 38 1 4.1513 2.7512 -7.6895 39 1 3.3155 0.9853 -11.4958 40 1 3.7979 2.6959 -11.3946 41 1 4.9874 1.4147 -11.0614 42 1 1.8042 2.1490 -8.2984 43 1 1.9386 3.1249 -9.7807 44 1 1.4561 1.4143 -9.8818 45 1 3.0073 -4.1143 -5.8366 46 1 4.5726 -3.3834 -6.2657 47 1 4.3380 -4.1024 -4.6544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362145709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:32 Heat of formation + Delta-G solvation = -47.478096 kcal Electronic energy + Delta-G solvation = -29523.871509 eV Core-core repulsion = 25322.621581 eV Total energy + Delta-G solvation = -4201.249928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.89294 -41.81097 -40.42668 -38.62162 -36.90193 -36.38034 -35.00362 -34.47485 -34.17896 -31.88555 -30.24675 -28.36255 -28.28177 -28.16739 -27.22608 -25.17500 -24.45497 -22.56184 -21.88922 -21.31740 -20.92990 -19.92307 -18.93560 -18.48897 -17.67783 -17.62170 -17.38156 -17.25477 -16.74621 -16.10259 -16.03216 -15.79523 -15.71181 -15.37986 -14.94812 -14.82037 -14.67594 -14.49516 -14.12109 -13.81597 -13.65955 -13.49335 -13.32652 -13.30003 -13.15585 -12.93410 -12.89254 -12.78310 -12.70868 -12.40434 -12.15197 -12.11988 -12.03904 -11.64828 -11.46550 -11.29917 -11.18686 -11.08655 -10.86254 -10.24288 -9.91349 -9.44563 -8.37086 -6.43527 0.15850 0.34023 0.84842 1.29446 1.37461 1.43865 1.48072 1.71208 2.25857 2.28223 2.33677 2.82901 2.98501 3.19177 3.71347 3.78037 3.85793 3.93149 4.17433 4.26280 4.39216 4.43055 4.50150 4.53783 4.59199 4.63443 4.64753 4.68641 4.71041 4.77501 4.78608 4.86815 4.90522 4.97758 5.17697 5.24656 5.29664 5.30104 5.34774 5.39523 5.43304 5.55304 5.71604 5.96996 6.12102 6.30714 6.56166 6.77924 7.03317 7.13878 7.29316 8.78178 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.002415 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.657985 B =11590.292936 C =12678.469491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.240 3.760 3 H 0.029 0.971 4 C -0.534 4.534 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.940 3.060 9 H -0.257 1.257 10 H -0.290 1.290 11 H -0.261 1.261 12 N -0.683 5.683 13 C 0.587 3.413 14 O -0.573 6.573 15 C 0.032 3.968 16 C -0.245 4.245 17 C 0.329 3.671 18 N -0.607 5.607 19 C 0.657 3.343 20 O -0.554 6.554 21 O -0.349 6.349 22 C 0.129 3.871 23 C -0.186 4.186 24 C -0.134 4.134 25 C -0.185 4.185 26 N -0.359 5.359 27 C 0.079 3.921 28 N -0.253 5.253 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.271 0.729 33 H 0.409 0.591 34 H 0.164 0.836 35 H 0.437 0.563 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 -2.698 -34.650 35.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.135 3.865 3 H 0.047 0.953 4 C -0.572 4.572 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.571 5.571 8 Si 0.766 3.234 9 H -0.182 1.182 10 H -0.217 1.217 11 H -0.186 1.186 12 N -0.331 5.331 13 C 0.371 3.629 14 O -0.451 6.451 15 C -0.133 4.133 16 C -0.278 4.278 17 C 0.108 3.892 18 N -0.264 5.264 19 C 0.411 3.589 20 O -0.441 6.441 21 O -0.263 6.263 22 C 0.093 3.907 23 C -0.243 4.243 24 C -0.191 4.191 25 C -0.242 4.242 26 N -0.150 5.150 27 C -0.059 4.059 28 N -0.083 5.083 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.181 0.819 35 H 0.278 0.722 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.139 0.861 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.740 -2.527 -33.725 34.150 hybrid contribution -0.197 0.536 0.257 0.626 sum 4.543 -1.992 -33.467 33.833 Atomic orbital electron populations 1.22350 0.97353 1.01897 0.99763 1.18915 0.91604 0.93356 0.82583 0.95346 1.21184 1.32573 1.13644 0.89816 0.92694 1.25567 0.96838 0.99486 0.95160 1.69978 1.46542 1.41912 0.98640 0.85989 0.79821 0.80182 0.77366 1.18213 1.21712 1.18576 1.45944 1.64072 1.14423 1.08677 1.17333 0.77703 0.85643 0.82237 1.90727 1.52748 1.16490 1.85142 1.21773 1.03733 0.92534 0.95287 1.21431 1.13613 1.02173 0.90576 1.17144 1.00679 0.88097 0.83237 1.40784 1.67506 1.12231 1.05909 1.17795 0.76908 0.82411 0.81815 1.90972 1.48856 1.39495 1.64775 1.86320 1.80448 1.38468 1.21027 1.22539 0.96385 0.77096 0.94703 1.22529 0.99775 1.00030 1.01943 1.21899 1.03191 1.04786 0.89239 1.22524 0.94531 1.03522 1.03650 1.49060 1.51684 1.08980 1.05241 1.22549 1.02288 0.79102 1.01992 1.77745 1.19953 1.14583 0.95983 0.93518 0.93406 0.91555 0.91951 0.75547 0.81866 0.72219 0.91416 0.89002 0.92281 0.90672 0.87967 0.90725 0.92258 0.89011 0.91351 0.87932 0.86052 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.20 8.97 71.98 0.65 -6.56 16 2 C 0.24 12.27 2.15 44.25 0.10 12.36 16 3 H 0.03 1.60 6.63 -2.39 -0.02 1.58 16 4 C -0.53 -30.63 9.31 25.60 0.24 -30.39 16 5 H 0.05 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.71 5.45 84.66 0.46 2.17 16 7 N -0.93 -57.18 13.96 21.45 0.30 -56.88 16 8 Si 0.94 45.95 24.37 68.60 1.67 47.62 16 9 H -0.26 -11.70 6.87 99.48 0.68 -11.02 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.26 -12.74 6.53 99.48 0.65 -12.09 16 12 N -0.68 -31.08 5.07 -449.09 -2.28 -33.36 16 13 C 0.59 26.46 7.79 86.75 0.68 27.13 16 14 O -0.57 -29.36 16.56 -3.93 -0.07 -29.42 16 15 C 0.03 1.22 7.09 42.33 0.30 1.52 16 16 C -0.25 -8.44 9.41 22.37 0.21 -8.23 16 17 C 0.33 8.09 7.67 130.99 1.00 9.10 16 18 N -0.61 -10.16 5.42 -434.29 -2.35 -12.52 16 19 C 0.66 13.80 8.02 129.79 1.04 14.85 16 20 O -0.55 -15.77 9.00 19.80 0.18 -15.59 16 21 O -0.35 -5.59 9.94 -55.63 -0.55 -6.14 16 22 C 0.13 1.76 1.13 -10.80 -0.01 1.75 16 23 C -0.19 -2.84 8.37 71.98 0.60 -2.24 16 24 C -0.13 -0.90 8.85 71.98 0.64 -0.27 16 25 C -0.19 -2.79 8.37 71.98 0.60 -2.19 16 26 N -0.36 -8.00 4.04 -366.11 -1.48 -9.48 16 27 C 0.08 0.71 11.28 127.77 1.44 2.16 16 28 N -0.25 -8.09 12.26 -48.44 -0.59 -8.69 16 29 H 0.05 2.16 3.27 -2.39 -0.01 2.15 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 33 H 0.41 17.28 8.23 -92.71 -0.76 16.52 16 34 H 0.16 6.32 5.81 -2.91 -0.02 6.31 16 35 H 0.44 3.23 8.08 -92.71 -0.75 2.49 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 39 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.06 1.32 5.88 -2.38 -0.01 1.30 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.12 0.18 7.50 -2.39 -0.02 0.16 16 47 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -80.49 382.11 2.21 -78.28 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.57 Total: 25.01 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 7.94 Total: 21.16 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -6.40 Total: -120.92 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.44 Total: -51.15 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -80.49 2.21 -78.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362145709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.806 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds