Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 C 1.53003 * 109.46635 * 119.99690 * 2 1 3 5 5 N 1.46495 * 109.46776 * 175.00115 * 4 2 1 6 6 C 1.36272 * 119.81969 * 269.72724 * 5 4 2 7 7 N 1.36259 * 120.69616 * 359.97438 * 6 5 4 8 8 C 1.40608 * 118.60515 * 179.74901 * 6 5 4 9 9 C 1.41505 * 120.85377 * 180.23396 * 8 6 5 10 10 O 1.21418 * 120.00314 * 354.05072 * 9 8 6 11 11 C 1.50698 * 119.99746 * 174.05266 * 9 8 6 12 12 N 1.46898 * 109.47461 * 179.97438 * 11 9 8 13 13 C 1.46898 * 111.00283 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.47228 * 35.00175 * 13 12 11 15 15 C 1.53000 * 109.47096 * 274.99928 * 13 12 11 16 16 C 1.50700 * 109.46819 * 155.00095 * 13 12 11 17 17 H 1.08002 * 120.00497 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99842 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00075 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 120.00325 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46914 * 89.99627 * 20 18 16 22 22 H 1.48497 * 109.47265 * 209.99888 * 20 18 16 23 23 H 1.48500 * 109.46975 * 330.00055 * 20 18 16 24 24 C 1.41824 * 118.28761 * 0.53549 * 8 6 5 25 25 O 1.35023 * 120.26277 * 179.69437 * 24 8 6 26 26 N 1.32308 * 119.47066 * 359.72089 * 24 8 6 27 27 C 1.33182 * 121.40549 * 359.97438 * 26 24 8 28 28 O 1.21887 * 119.06638 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.47230 * 300.00519 * 1 2 3 30 30 H 1.09007 * 109.47043 * 60.00323 * 1 2 3 31 31 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47336 * 239.99530 * 2 1 3 33 33 H 1.08996 * 109.46620 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47082 * 299.99389 * 3 2 1 35 35 H 1.08993 * 109.46988 * 59.99592 * 3 2 1 36 36 H 1.09004 * 109.46805 * 295.00197 * 4 2 1 37 37 H 1.08999 * 109.47485 * 54.99803 * 4 2 1 38 38 H 0.97001 * 119.99785 * 5.80578 * 7 6 5 39 39 H 0.97000 * 119.99498 * 185.80093 * 7 6 5 40 40 H 1.09001 * 109.47157 * 299.99845 * 11 9 8 41 41 H 1.09005 * 109.47564 * 59.99810 * 11 9 8 42 42 H 1.00901 * 110.99872 * 303.96006 * 12 11 9 43 43 H 1.09000 * 109.46696 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47284 * 300.00213 * 15 13 12 45 45 H 1.09000 * 109.47190 * 60.00245 * 15 13 12 46 46 H 0.97008 * 120.00169 * 180.02562 * 19 18 16 47 47 H 0.96700 * 114.00005 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1907 6 6 4.0782 -1.9148 0.6095 7 7 3.3123 -2.9102 0.0808 8 6 5.4816 -1.9869 0.5624 9 6 6.1318 -3.0931 -0.0343 10 8 5.4825 -4.0450 -0.4170 11 6 7.6302 -3.0895 -0.1948 12 7 8.0571 -4.3406 -0.8356 13 6 9.5154 -4.3723 -1.0092 14 1 9.9926 -3.8709 -0.1671 15 6 9.8901 -3.6559 -2.3082 16 6 9.9828 -5.8036 -1.0721 17 1 9.2680 -6.6092 -0.9907 18 6 11.3230 -6.0848 -1.2324 19 7 12.1935 -5.1039 -1.3309 20 14 11.9025 -7.8590 -1.3096 21 1 11.8911 -8.3225 -2.7204 22 1 13.2823 -7.9531 -0.7688 23 1 10.9946 -8.7119 -0.5011 24 6 6.2287 -0.9256 1.1342 25 8 7.5784 -0.9570 1.1166 26 7 5.5925 0.0951 1.6853 27 6 4.2621 0.1493 1.7152 28 8 3.7201 1.1097 2.2343 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.7515 -0.1582 2.1370 37 1 1.6053 -1.7197 1.2954 38 1 2.3483 -2.8106 0.0397 39 1 3.7313 -3.7182 -0.2545 40 1 7.9272 -2.2436 -0.8148 41 1 8.1005 -3.0047 0.7849 42 1 7.7373 -5.1421 -0.3127 43 1 10.9722 -3.6791 -2.4367 44 1 9.4129 -4.1573 -3.1503 45 1 9.5521 -2.6207 -2.2627 46 1 13.1364 -5.3017 -1.4440 47 1 7.9951 -0.1890 1.5309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363812054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = -90.743203 kcal Electronic energy + Delta-G solvation = -30300.302346 eV Core-core repulsion = 26097.176302 eV Total energy + Delta-G solvation = -4203.126044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.26988 -40.79378 -39.82956 -38.63522 -37.46446 -37.04872 -35.66160 -34.41628 -34.14604 -32.26093 -30.64192 -28.37118 -28.03483 -27.45885 -26.71021 -24.84144 -24.75580 -22.00205 -21.71777 -21.12976 -20.85720 -20.01658 -18.87511 -18.39655 -17.99687 -17.77058 -17.04617 -16.86964 -16.44934 -16.33208 -16.19120 -15.83625 -15.57805 -15.38763 -15.30016 -14.91329 -14.51413 -14.41953 -14.36560 -14.09626 -13.88631 -13.39261 -13.27252 -13.02582 -12.96522 -12.80610 -12.60010 -12.41209 -12.25911 -12.15203 -12.06806 -12.00838 -11.97680 -11.75374 -11.29346 -11.21162 -10.87607 -10.78278 -10.55951 -10.45211 -9.49259 -8.97931 -8.09804 -6.23081 -0.18181 -0.00004 0.93949 1.44666 1.45679 1.55660 1.57810 2.00522 2.41287 2.44432 2.65123 2.94075 3.18840 3.37256 3.54103 3.66385 3.75489 3.83052 3.92142 4.14484 4.18541 4.37444 4.55598 4.59508 4.63484 4.67015 4.76302 4.84005 4.86135 4.92629 4.94263 5.02090 5.12001 5.14066 5.26878 5.32044 5.37237 5.51355 5.65965 5.70449 5.90409 6.17349 6.22008 6.27143 6.49452 6.67797 6.68622 6.84589 7.03591 7.05167 7.46867 8.95688 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.002507 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.099345 B =11165.390019 C =11802.857495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.082 3.918 5 N -0.539 5.539 6 C 0.573 3.427 7 N -0.770 5.770 8 C -0.432 4.432 9 C 0.437 3.563 10 O -0.501 6.501 11 C 0.031 3.969 12 N -0.680 5.680 13 C 0.217 3.783 14 H -0.022 1.022 15 C -0.114 4.114 16 C -0.537 4.537 17 H 0.057 0.943 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.961 3.039 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.514 3.486 25 O -0.431 6.431 26 N -0.668 5.668 27 C 0.676 3.324 28 O -0.554 6.554 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.424 0.576 39 H 0.439 0.561 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.334 0.666 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.360 8.773 4.190 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.198 4.198 4 C -0.038 4.038 5 N -0.264 5.264 6 C 0.333 3.667 7 N -0.323 5.323 8 C -0.447 4.447 9 C 0.323 3.677 10 O -0.382 6.382 11 C -0.098 4.098 12 N -0.312 5.312 13 C 0.109 3.891 14 H -0.005 1.005 15 C -0.172 4.172 16 C -0.576 4.576 17 H 0.075 0.925 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.786 3.214 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.193 1.193 24 C 0.317 3.683 25 O -0.228 6.228 26 N -0.430 5.430 27 C 0.378 3.622 28 O -0.430 6.430 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.259 0.741 39 H 0.288 0.712 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.151 0.849 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -24.651 9.297 3.752 26.611 hybrid contribution 0.914 -0.893 0.712 1.463 sum -23.737 8.404 4.463 25.573 Atomic orbital electron populations 1.21762 0.91317 1.03701 1.03018 1.21536 0.98496 0.96159 0.96543 1.21806 0.99399 0.96547 1.02031 1.22503 0.74575 1.04656 1.02105 1.46599 1.11422 1.17951 1.50413 1.17903 0.88275 0.80738 0.79763 1.43447 1.11407 1.18841 1.58626 1.18171 0.89848 1.05709 1.30952 1.20164 0.91032 0.83460 0.73076 1.90106 1.66733 1.36366 1.45006 1.22150 0.93068 0.95227 0.99397 1.60491 1.14212 1.02990 1.53501 1.18921 0.82507 0.94801 0.92850 1.00467 1.21554 1.01373 0.96220 0.98087 1.21584 0.92888 0.92748 1.50339 0.92516 1.25693 0.96843 1.01269 0.94706 1.70016 1.02404 1.32728 1.50364 0.85520 0.77379 0.80157 0.78324 1.20244 1.20865 1.19318 1.19906 0.84792 0.85001 0.78609 1.85217 1.13282 1.49565 1.74758 1.69418 1.07977 1.28806 1.36839 1.17221 0.83775 0.82182 0.79017 1.90934 1.71690 1.32049 1.48292 0.92006 0.91513 0.90053 0.90315 0.95800 0.91846 0.92653 0.87549 0.85642 0.74061 0.71170 0.88296 0.91659 0.84903 0.92348 0.95656 0.95631 0.92848 0.70837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.19 71.98 0.66 -0.11 16 2 C -0.11 -1.13 3.13 -10.79 -0.03 -1.16 16 3 C -0.14 -2.42 7.92 71.98 0.57 -1.85 16 4 C 0.08 0.93 4.47 86.38 0.39 1.32 16 5 N -0.54 -10.14 2.48 -653.82 -1.62 -11.76 16 6 C 0.57 10.68 7.53 133.14 1.00 11.68 16 7 N -0.77 -9.22 8.65 -53.96 -0.47 -9.68 16 8 C -0.43 -10.60 5.78 -21.01 -0.12 -10.72 16 9 C 0.44 12.87 6.95 26.49 0.18 13.05 16 10 O -0.50 -15.35 13.49 -3.46 -0.05 -15.40 16 11 C 0.03 1.09 4.12 85.56 0.35 1.44 16 12 N -0.68 -29.33 5.92 -499.47 -2.96 -32.29 16 13 C 0.22 11.05 2.60 44.17 0.11 11.17 16 14 H -0.02 -1.22 7.80 -2.39 -0.02 -1.24 16 15 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 16 C -0.54 -29.64 8.59 25.60 0.22 -29.42 16 17 H 0.06 3.10 7.62 -2.91 -0.02 3.07 16 18 C 0.01 0.78 5.30 84.65 0.45 1.23 16 19 N -0.92 -52.38 11.32 21.45 0.24 -52.14 16 20 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 C 0.51 12.82 7.88 85.51 0.67 13.49 16 25 O -0.43 -9.47 9.72 -82.95 -0.81 -10.27 16 26 N -0.67 -18.59 10.34 -438.51 -4.54 -23.13 16 27 C 0.68 18.42 6.91 179.65 1.24 19.67 16 28 O -0.55 -17.70 14.79 -4.95 -0.07 -17.77 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.08 0.10 8.14 -2.39 -0.02 0.09 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.02 0.55 6.06 -2.39 -0.01 0.53 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 36 H 0.11 1.46 7.36 -2.38 -0.02 1.44 16 37 H 0.13 0.41 6.50 -2.39 -0.02 0.39 16 38 H 0.42 1.69 6.80 -92.71 -0.63 1.06 16 39 H 0.44 6.95 5.40 -94.51 -0.51 6.44 16 40 H 0.10 3.43 6.94 -2.39 -0.02 3.42 16 41 H 0.07 2.26 6.80 -2.38 -0.02 2.25 16 42 H 0.33 14.53 7.93 -89.69 -0.71 13.82 16 43 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 44 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.02 1.11 7.45 -2.39 -0.02 1.09 16 46 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 47 H 0.43 5.94 8.98 -74.06 -0.66 5.28 16 Total: -1.00 -74.44 373.96 -3.34 -77.77 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.45 Total: 24.42 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 6.36 Total: 24.77 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -9.34 Total: -129.00 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.93 Total: -43.44 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -74.44 -3.34 -77.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363812054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.969 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds